mRNA_Ecto-sp13_S_contig17737.5375.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17737.5375.1 vs. uniprot
Match: D7FZB6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB6_ECTSI) HSP 1 Score: 208 bits (530), Expect = 2.770e-62 Identity = 98/123 (79.67%), Postives = 104/123 (84.55%), Query Frame = 2
Query: 116 VCCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICDIAAICIREVRELARIIDLIADLVYMTTVGCMTAQMITEMKYQGENAPLAEAIVGR 484
+CC G CGER CPCFCLC+ESF C SCAVSSSRMYLMDKF V PDPWDNRIIRFNN LQ+LSCIC+IAAICI E+RELARIIDLIADLVYMTTVGCMT QMI EM YQ AP A+AI GR
Sbjct: 78 MCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVMPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADLVYMTTVGCMTGQMIYEMDYQASVAPKAQAIAGR 200
BLAST of mRNA_Ecto-sp13_S_contig17737.5375.1 vs. uniprot
Match: D7FZB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB5_ECTSI) HSP 1 Score: 206 bits (523), Expect = 1.960e-61 Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 2
Query: 116 VCCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICDIAAICIREVRELARIIDLIADLVYMTTVGCMT 415
+CCFEPG CGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCIC IAAIC+REVRELARIIDLIADLVYMTTVGCMT
Sbjct: 78 MCCFEPGDCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICHIAAICVREVRELARIIDLIADLVYMTTVGCMT 177
BLAST of mRNA_Ecto-sp13_S_contig17737.5375.1 vs. uniprot
Match: D7FZB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB7_ECTSI) HSP 1 Score: 188 bits (478), Expect = 3.200e-54 Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = 2
Query: 122 CFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICDIAAICIREVRELARIIDLIADLVYMTTVGCMTAQMITEMKYQGENAPLAEAIVGRE 487
C EPG CGER CPCFCLCMESF C SCAVSSSRMYLMDKF VQPDPWDNRIIRFNN LQ+LSCIC AAI +++ RELAR+ D++A+LVY++ VGCMT QM+ EM+YQ +P A+ I GRE
Sbjct: 80 CCEPGDCGERRCPCFCLCMESFLCPSCAVSSSRMYLMDKFEVQPDPWDNRIIRFNNCLQLLSCICHCAAIFVQDFRELARLTDVLANLVYLSAVGCMTGQMMAEMEYQEGTSPEAQCITGRE 201
BLAST of mRNA_Ecto-sp13_S_contig17737.5375.1 vs. uniprot
Match: A0A835YWZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ0_9STRA) HSP 1 Score: 177 bits (448), Expect = 4.660e-50 Identity = 81/120 (67.50%), Postives = 98/120 (81.67%), Query Frame = 2
Query: 119 CCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICDIAAICIREVRELARIIDLIADLVYMTTVGCMTAQMITEMKYQGENAPLAEAIV 478
CC +PG CGE+ P CLC+ESF C SCAVSSSRM++MDK+ + PDPWDNRIIRFNNALQ+LSCIC+ AIC+ E+RE ARI+DLIA++V+ TTVGCMT QM+ E+ YQ AP AEAIV
Sbjct: 80 CCMKPGHCGEKSSPACCLCLESFCCLSCAVSSSRMFIMDKYRLLPDPWDNRIIRFNNALQLLSCICNCLAICVEELREFARILDLIAEIVFYTTVGCMTGQMMHELDYQQNMAPKAEAIV 199
BLAST of mRNA_Ecto-sp13_S_contig17737.5375.1 vs. uniprot
Match: A0A2R5GIB4_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIB4_9STRA) HSP 1 Score: 137 bits (344), Expect = 3.310e-34 Identity = 66/126 (52.38%), Postives = 88/126 (69.84%), Query Frame = 2
Query: 110 LQVCCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICDIAAICIREV-----RELARIIDLIADLVYMTTVGCMTAQMITEMKY-----QGENA 457
LQ CC PG GE +CP FCLCME C SC++S++R +MD++ + DP DNRIIRFNN +Q+LSC+ ++ +ICI E+ RE A+I+DLIA +VYM T GCM AQM +EM++ QG NA
Sbjct: 76 LQFCCISPGNMGEENCPEFCLCMEVCCCLSCSISATRFMIMDQYSIVSDPCDNRIIRFNNFMQILSCVLNLLSICIEELYVRIFREAAQIVDLIAKIVYMVTFGCMAAQMKSEMEFREKQGQGPNA 201
BLAST of mRNA_Ecto-sp13_S_contig17737.5375.1 vs. uniprot
Match: A0A484EEY5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEY5_BRELC) HSP 1 Score: 130 bits (328), Expect = 1.840e-32 Identity = 59/123 (47.97%), Postives = 84/123 (68.29%), Query Frame = 2
Query: 116 VCCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICDIAAICIREVRELARIIDLIADLVYMTTVGCMTAQMITEMKYQGENAPLAEAIVGR 484
V C G CGE CP FCLC+ESF C CAVS++RM +MD++ +QPD WDNRIIR NN +Q++SC+C + +ICI E+ +LA ++ IA Y TT GCMTAQ+ E++ + + + + + R
Sbjct: 74 VPCARSGQCGESSCPNFCLCLESFCCNGCAVSATRMLVMDRYRLQPDKWDNRIIRCNNCIQLVSCVCSLLSICISELGDLADLMYCIAQCTYATTQGCMTAQVNVELREREKGFEVQDETMDR 196
BLAST of mRNA_Ecto-sp13_S_contig17737.5375.1 vs. uniprot
Match: A0A7S2UXX8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXX8_9STRA) HSP 1 Score: 129 bits (325), Expect = 9.870e-32 Identity = 62/108 (57.41%), Postives = 77/108 (71.30%), Query Frame = 2
Query: 122 CFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICDIAAICIREVRELARIIDLIADLVYMTTVGCMTAQMITEMKYQ 445
CF+ G CGE CP CLC+E+ C SCAVSS+RM +MD + +Q DPWD RIIRFNN +Q+LSCIC IAAI +R+ A +ID IAD VY + CMTAQ+ E+ YQ
Sbjct: 76 CFKAGHCGEESCPDVCLCLEAVFCNSCAVSSTRMLVMDTYFLQSDPWDRRIIRFNNCMQMLSCICHIAAIIDPSLRDCAVLIDRIADCVYYSVQACMTAQVNFELDYQ 183
BLAST of mRNA_Ecto-sp13_S_contig17737.5375.1 vs. uniprot
Match: A0A024G979_9STRA (Uncharacterized protein n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024G979_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.720e-30 Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 2
Query: 122 CFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICDIAAICIREVRELARIIDLIADLVYMTTVGCMTAQMITEMKYQGENAPLAEAIVGR 484
C G CGER CP CLC+ES+ C CAVS++RM +MD++ ++PD WDNRIIR NN +Q+LSC+C AICI E+ A YMTT GCMTAQ+ E+K + + ++ R
Sbjct: 76 CLRSGQCGERSCPHCCLCLESWLCNGCAVSATRMLVMDRYNLRPDKWDNRIIRCNNCIQLLSCVCSCLAICISELGNXXXXXXXXAQCTYMTTQGCMTAQVNVELKRRKNYRAAVDEVMDR 196
BLAST of mRNA_Ecto-sp13_S_contig17737.5375.1 vs. uniprot
Match: A0A0P1B380_PLAHL (Splicing factor 3 subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B380_PLAHL) HSP 1 Score: 125 bits (314), Expect = 3.420e-30 Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 2
Query: 116 VCCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICDIAAICIREVRELARIIDLIADLVYMTTVGCMTAQ 421
V C G CGE +CP CLC+ESF C CAVS++RM +MD++ +QPD WDNRIIR NN +Q++SC+C + +ICI E+ +LA ++ IA Y TT GCMTAQ
Sbjct: 74 VPCVRSGSCGESNCPNCCLCLESFCCNGCAVSATRMLVMDRYRLQPDKWDNRIIRCNNCIQLVSCVCSLLSICISELGDLADLMYCIAQCTYATTQGCMTAQ 175
BLAST of mRNA_Ecto-sp13_S_contig17737.5375.1 vs. uniprot
Match: F0XXL2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXL2_AURAN) HSP 1 Score: 126 bits (316), Expect = 7.260e-30 Identity = 61/121 (50.41%), Postives = 85/121 (70.25%), Query Frame = 2
Query: 119 CCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICDIAAICIREVRELARIIDLIADLVYMTTVGCMTAQMITEMKYQGENAPLAEAIVG 481
CCF+ G G++ PC CL +E F C SC++SS+RMY+MDK+ +Q DP D RIIRFNN +Q+L+CIC +AA+ R+LA I+DLIAD+V+ TT GCM AQ+ E+ + ++ LA G
Sbjct: 76 CCFKAGSIGDQGNPC-CLALEGFCCLSCSLSSTRMYVMDKYDLQSDPCDRRIIRFNNCVQMLACICHLAAMFDPSFRDLANILDLIADIVFYTTAGCMHAQVHYELTEREKSGTLAAVSAG 195 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17737.5375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17737.5375.1 >prot_Ecto-sp13_S_contig17737.5375.1 ID=prot_Ecto-sp13_S_contig17737.5375.1|Name=mRNA_Ecto-sp13_S_contig17737.5375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp MESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICDIAback to top mRNA from alignment at Ecto-sp13_S_contig17737:228..3622- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17737.5375.1 ID=mRNA_Ecto-sp13_S_contig17737.5375.1|Name=mRNA_Ecto-sp13_S_contig17737.5375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3395bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17737:228..3622- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17737:228..3622- >mRNA_Ecto-sp13_S_contig17737.5375.1 ID=mRNA_Ecto-sp13_S_contig17737.5375.1|Name=mRNA_Ecto-sp13_S_contig17737.5375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17737:228..3622- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |