mRNA_Ecto-sp13_S_contig17732.5374.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17732.5374.1
Unique NamemRNA_Ecto-sp13_S_contig17732.5374.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17732.5374.1 vs. uniprot
Match: D7FUN0_ECTSI (Anamorsin homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUN0_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 1.740e-46
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1 
Query:    1 GDGCATKRRACKDCSCGRAEMEMNGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPA 225
            GDGCATKRRACKDCSCGRAEMEM+GGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPA
Sbjct:  219 GDGCATKRRACKDCSCGRAEMEMSGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPA 293
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BLAST of mRNA_Ecto-sp13_S_contig17732.5374.1 vs. uniprot
Match: W7TKP2_9STRA (Anamorsin homolog n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKP2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.620e-20
Identity = 47/75 (62.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    1 GDGCATKRRACKDCSCGRAEMEMNGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPA 225
            G GC TK+RACK+CSCGRAE E         GG A  LPV+S  +++ A  S+CGNC KGDAFRCGGCPFLGKPA
Sbjct:  215 GQGCETKKRACKNCSCGRAEQEEG------RGGVA--LPVMSEEELE-ASVSSCGNCYKGDAFRCGGCPFLGKPA 280
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BLAST of mRNA_Ecto-sp13_S_contig17732.5374.1 vs. uniprot
Match: A0A7S4GK76_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GK76_9EUGL)

HSP 1 Score: 76.6 bits (187), Expect = 3.600e-16
Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:    1 GDGCATKRRACKDCSCGRAEMEMNGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPA 225
            G GCAT+++ACKDCSCGRAE+E  G               + +   +D     CG+C+KGDAFRC  CPFLGKPA
Sbjct:   64 GGGCATRKKACKDCSCGRAELEAKG---------------IDI-QPEDMPAGGCGSCAKGDAFRCATCPFLGKPA 122
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BLAST of mRNA_Ecto-sp13_S_contig17732.5374.1 vs. uniprot
Match: A0A0S4JP81_BODSA (Anamorsin homolog, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JP81_BODSA)

HSP 1 Score: 75.1 bits (183), Expect = 8.190e-16
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:    4 DGCATKRRACKDCSCGRAEMEMNGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPA 225
            + C+T+RRACK+C CGRAE+E   G++  N      +P       D      CG CS+GDAFRC GCPFLGKPA
Sbjct:   37 EDCSTRRRACKNCVCGRAELEKAQGLTVDN------IP-------DGPPAGGCGGCSRGDAFRCAGCPFLGKPA 97
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BLAST of mRNA_Ecto-sp13_S_contig17732.5374.1 vs. uniprot
Match: W6KUD7_9TRYP (CIAPIN1 domain-containing protein n=2 Tax=unclassified Phytomonas TaxID=470182 RepID=W6KUD7_9TRYP)

HSP 1 Score: 75.1 bits (183), Expect = 9.530e-16
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:    1 GDGCATKRRACKDCSCGRAEMEMNGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPA 225
            G  C T+RRACK+C CGRA +E           A G LP   +  +    T  CGNC++GDAFRC GCP+LG+PA
Sbjct:   36 GSDCTTRRRACKNCVCGRAALERKLE-------AEGKLPPEGISGMPFVPTGGCGNCARGDAFRCAGCPYLGQPA 103
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BLAST of mRNA_Ecto-sp13_S_contig17732.5374.1 vs. uniprot
Match: A0A024GTM7_9STRA (Anamorsin homolog n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GTM7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.230e-15
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:   19 KRRACKDCSCGRAEMEMNGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPA 225
            KRRACK+C+CGRAE E+  G            PVVS  ++   + S+CGNC KGDAFRCGGCPFLGKPA
Sbjct:  206 KRRACKNCTCGRAETEIASG------------PVVSDQELSQ-MVSSCGNCFKGDAFRCGGCPFLGKPA 261
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BLAST of mRNA_Ecto-sp13_S_contig17732.5374.1 vs. uniprot
Match: A0A836GQ73_9TRYP (CIAPIN1 domain-containing protein n=1 Tax=Leishmania martiniquensis TaxID=1580590 RepID=A0A836GQ73_9TRYP)

HSP 1 Score: 73.9 bits (180), Expect = 2.710e-15
Identity = 38/75 (50.67%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:    1 GDGCATKRRACKDCSCGRAEMEMNGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPA 225
            G+ C T+RRACK+C CGRAE+E           A G LP   +    +     CGNCSKGDAFRC  CPFLG+PA
Sbjct:   40 GEDCTTRRRACKNCVCGRAELERKLD-------AEGKLPPEGI----EMPPGGCGNCSKGDAFRCANCPFLGQPA 103
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BLAST of mRNA_Ecto-sp13_S_contig17732.5374.1 vs. uniprot
Match: G0U0B0_TRYVY (CIAPIN1 domain-containing protein n=1 Tax=Trypanosoma vivax (strain Y486) TaxID=1055687 RepID=G0U0B0_TRYVY)

HSP 1 Score: 73.9 bits (180), Expect = 2.850e-15
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:    4 DGCATKRRACKDCSCGRAEMEMNGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPA 225
            + C T+RRACK+C+CGRAE+E     +N      G LP + +G         CGNC+KGDAFRC  CPFLG PA
Sbjct:   45 EDCTTRRRACKNCTCGRAELERRLEANND-----GTLPEMPMG--------GCGNCAKGDAFRCANCPFLGTPA 105
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BLAST of mRNA_Ecto-sp13_S_contig17732.5374.1 vs. uniprot
Match: A0A836YHM6_9TRYP (CIAPIN1 domain-containing protein n=1 Tax=Porcisia hertigi TaxID=2761500 RepID=A0A836YHM6_9TRYP)

HSP 1 Score: 73.6 bits (179), Expect = 3.750e-15
Identity = 39/78 (50.00%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:    1 GDGCATKRRACKDCSCGRAEMEMN---GGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPA 225
            G+ C T+RRACK+C CGRAE+E      G  + NG    P                CGNCSKGDAFRC GCPFLG+PA
Sbjct:   39 GEDCTTRRRACKNCVCGRAELEAKLEAEGKLSPNGVEMPP--------------GGCGNCSKGDAFRCAGCPFLGQPA 102
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BLAST of mRNA_Ecto-sp13_S_contig17732.5374.1 vs. uniprot
Match: A0A836CCA2_9STRA (Anamorsin homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCA2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.600e-15
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:   10 CATKRRACKDCSCGRAEMEMNGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPA 225
            C+TK+RACK+CSCGRAE+E          GA  P P       D   +SACGNC +GDAFRC GCP+LG PA
Sbjct:  202 CSTKKRACKNCSCGRAELEA--------AGAPAPPPE------DGPGSSACGNCYRGDAFRCSGCPYLGLPA 259
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17732.5374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUN0_ECTSI1.740e-4698.67Anamorsin homolog n=1 Tax=Ectocarpus siliculosus T... [more]
W7TKP2_9STRA4.620e-2062.67Anamorsin homolog n=3 Tax=Monodopsidaceae TaxID=42... [more]
A0A7S4GK76_9EUGL3.600e-1649.33Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A0S4JP81_BODSA8.190e-1650.00Anamorsin homolog, putative n=1 Tax=Bodo saltans T... [more]
W6KUD7_9TRYP9.530e-1648.00CIAPIN1 domain-containing protein n=2 Tax=unclassi... [more]
A0A024GTM7_9STRA1.230e-1557.97Anamorsin homolog n=2 Tax=Albugo candida TaxID=653... [more]
A0A836GQ73_9TRYP2.710e-1550.67CIAPIN1 domain-containing protein n=1 Tax=Leishman... [more]
G0U0B0_TRYVY2.850e-1550.00CIAPIN1 domain-containing protein n=1 Tax=Trypanos... [more]
A0A836YHM6_9TRYP3.750e-1550.00CIAPIN1 domain-containing protein n=1 Tax=Porcisia... [more]
A0A836CCA2_9STRA4.600e-1554.17Anamorsin homolog n=1 Tax=Tribonema minus TaxID=30... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17732contigEcto-sp13_S_contig17732:617..1791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score159.5
Seed ortholog evalue6.3e-37
Seed eggNOG ortholog2880.D7FUN0
Preferred nameDRE2
Model size225
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001505,GO:0002064,GO:0002065,GO:0002066,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005829,GO:0006091,GO:0006790,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0008150,GO:0008152,GO:0009055,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010941,GO:0016043,GO:0016226,GO:0016491,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022900,GO:0030097,GO:0030154,GO:0030707,GO:0030855,GO:0031163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044572,GO:0044703,GO:0045019,GO:0045428,GO:0048037,GO:0048468,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048585,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051186,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0051704,GO:0055114,GO:0060429,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0071840,GO:0080134,GO:0080135,GO:1900407,GO:1900408,GO:1901031,GO:1901032,GO:1901298,GO:1901299,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903205,GO:1903206,GO:1903426,GO:1903427,GO:1904406,GO:2000377,GO:2000378,GO:2001023,GO:2001024,GO:2001038,GO:2001039
Exons2
EggNOG free text desc.metallo-sulfur cluster assembly
EggNOG OGsCOG5636@1,KOG4020@2759
Cds size225
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462920.2134664-CDS-Ecto-sp13_S_contig17732:616..7931681462920.2134664-CDS-Ecto-sp13_S_contig17732:616..793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17732 617..793 +
1681462920.224347-CDS-Ecto-sp13_S_contig17732:1743..17911681462920.224347-CDS-Ecto-sp13_S_contig17732:1743..1791Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17732 1744..1791 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17732.5374.1prot_Ecto-sp13_S_contig17732.5374.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17732 617..1791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17732.5374.1

>prot_Ecto-sp13_S_contig17732.5374.1 ID=prot_Ecto-sp13_S_contig17732.5374.1|Name=mRNA_Ecto-sp13_S_contig17732.5374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
GDGCATKRRACKDCSCGRAEMEMNGGVSNTNGGAAGPLPVVSVGDVDDAL
TSACGNCSKGDAFRCGGCPFLGKPA
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mRNA from alignment at Ecto-sp13_S_contig17732:617..1791+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17732.5374.1 ID=mRNA_Ecto-sp13_S_contig17732.5374.1|Name=mRNA_Ecto-sp13_S_contig17732.5374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1175bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17732:617..1791+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGACGGCTGCGCCACCAAGCGACGAGCGTGCAAGGACTGCTCCTGCGG
CCGTGCGGAGATGGAGATGAACGGGGGGGTCAGCAACACCAACGGCGGCG
CCGCGGGGCCCCTACCGGTGGTGTCCGTCGGGGACGTCGACGATGCCCTC
ACTTCCGCCTGCGGCAACTGCTCCAAGGTTGGTTTTAACAGAAAATTGGA
AAACGTCGAAATCGCGAGGACCAAACACGCTGTGCACTTCAAGCCTTGCT
ATCATCTACTACTTCGAAGTACTTGTTGTGGCGCGCCCAACCGGTGTGTA
CAGCGTTTTTTTTTTTCCCAGGAGGTGTGACGTCTTCTTCAAACCAGGGT
GCTTCGCCGTTATACGGCGACTGTTTTTGTCGAGACTTGCGTCAGCGATT
GTGTCCATGTTTGTTCAGCGCGCGGACGCCATCGCCGTCCTCCATCTTCA
GGCGGCCGCCGTTCCTAGCTTCATGCAGTTATTTAGCGAGGTTCTCTCGT
GCGCTGGCGGCGTTGTCGTCGCCGCTGGTCGGGTTGGGGGTGTCCATTAC
TACAATCACATGTGATTCTCAAGTATATTTTTTAAGCGACGGGCCGGGCT
GAGACGCTCGTATTTGCAGGACGAACAATCTGTCTCGTCGCGGACAACAC
CAGCTCTCCCCCCCGCGGGCCGCGCGCACACCGGCGAATCTCAATCTCCT
TCACATCCTACAGACCTCTCGATATACCGACACACACAAACTTTTGCTTC
ACCGCCGTTCTTCTTTTCTTTTGTGCTAGCGTCCTCCCTTGTTGGTCATG
TGCTAGCGTCATCCGGTGAGAACCTATTGTGCAAGTCCCGGCTTTGTAGC
GATGCGAGGCCACTGCTCTAACGACTACGGCATGCACGGCTTTGGGTACA
GCCCCCTCTTATTTTAGGACCCCCCCCCCCCCCCCCCCCCCCCCATTTTT
TTTTTTTCTTTTCTTTTCGTGTTCCTCTTTTTTTTTTTTTGTTTTGTTGT
TTATGCTGCCTTCCACTCTNNNNNNNNNNCTCCTCTTACCACCCCCGCTC
CCTCCTGTTTTGGGTCCGCCCCCCCTTTTTTTTGCCCCCCCCCCCCCCCC
CCCCCTTTATTTTTTTCTTGTCCCCAGGGCGACGCGTTCCGATGCGGGGG
TTGTCCGTTCCTCGGAAAGCCAGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17732:617..1791+

>mRNA_Ecto-sp13_S_contig17732.5374.1 ID=mRNA_Ecto-sp13_S_contig17732.5374.1|Name=mRNA_Ecto-sp13_S_contig17732.5374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17732:617..1791+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGACGGCTGCGCCACCAAGCGACGAGCGTGCAAGGACTGCTCCTGCGG
CCGTGCGGAGATGGAGATGAACGGGGGGGTCAGCAACACCAACGGCGGCG
CCGCGGGGCCCCTACCGGTGGTGTCCGTCGGGGACGTCGACGATGCCCTC
ACTTCCGCCTGCGGCAACTGCTCCAAGGGCGACGCGTTCCGATGCGGGGG
TTGTCCGTTCCTCGGAAAGCCAGCC
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