mRNA_Ecto-sp13_S_contig17729.5370.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17729.5370.1
Unique NamemRNA_Ecto-sp13_S_contig17729.5370.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17729.5370.1 vs. uniprot
Match: A0A6H5KD39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD39_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 1.350e-47
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 1 
Query:    1 EWLVVAKKGQGVKKSETRRENAETEYHRLLCEESMQEAGLKLLKDRRLEVALRTVGKLGEELDRLTELLEELGGQEMSLVAKDADAEQQESAQLESAAAVAAE 309
            EWLVVAKKGQGV+KSETRRENAETEYHRLLCEESMQEAGLKLL+DRRLEVALR VGK GEELDRLTELLEELGGQEMSLVAK ADAEQQESAQLESAAAVAAE
Sbjct:  755 EWLVVAKKGQGVEKSETRRENAETEYHRLLCEESMQEAGLKLLRDRRLEVALRNVGKQGEELDRLTELLEELGGQEMSLVAKGADAEQQESAQLESAAAVAAE 857
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17729.5370.1 vs. uniprot
Match: D7FIN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN4_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 3.890e-36
Identity = 76/81 (93.83%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:    1 EWLVVAKKGQGVKKSETRRENAETEYHRLLCEESMQEAGLKLLKDRRLEVALRTVGKLGEELDRLTELLEELGGQEMSLVA 243
            EWLVVAKKGQGVKKSETRRENAETEYHRLLCEESMQEAGLKLLKDRRLEVALR VGKLGEELDRLTELLEELGGQ M   A
Sbjct:  765 EWLVVAKKGQGVKKSETRRENAETEYHRLLCEESMQEAGLKLLKDRRLEVALRNVGKLGEELDRLTELLEELGGQMMERAA 845
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17729.5370.1 vs. uniprot
Match: D7FTS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS2_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.500e-22
Identity = 54/79 (68.35%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    1 EWLVVAKKGQGVKKSETRRENAETEYHRLLCEESMQEAGLKLLKDRRLEVALRTVGKLGEELDRLTELLEELGGQEMSL 237
            EWL+ A++GQGVK+SE RRENAETEYHRLL EESM +AG +++KDRRLEV+L+TV K+GEEL RLT++ E+L  QE SL
Sbjct:  261 EWLITAQEGQGVKRSERRRENAETEYHRLLFEESMLKAGREIIKDRRLEVSLKTVIKMGEELQRLTKIHEQLTEQEKSL 339
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17729.5370.1 vs. uniprot
Match: A0A6H5L4G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G1_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.020e-20
Identity = 57/106 (53.77%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:    1 EWLVVAKKGQGVKKSETRRENAETEYHRLLCEESMQEAGLKLLKDRRLEVALRTVGKLGEELDRLTELLEELGGQEMSLVAKDA----DAEQQESAQLESAAAVAA 306
            EWL  AKKG G++KSETRR+ AET+YHR+L +ESM +AG+++LKDRRLEV+L+T+ K+G +L+RLT+L E+L  +E SL   +A    D ++    + ESAAA AA
Sbjct:  302 EWLCSAKKGDGIQKSETRRDCAETDYHRVLFQESMLQAGMEILKDRRLEVSLKTLAKMGGDLERLTKLHEQLAEEEASLTTVNAEDKVDGDEATMHEAESAAAPAA 407
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17729.5370.1 vs. uniprot
Match: D7FMC3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC3_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 5.460e-20
Identity = 49/85 (57.65%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    1 EWLVVAKKGQGVKKSETRRENAETEYHRLLCEESMQEAGLKLLKDRRLEVALRTVGKLGEELDRLTELLEELGGQEMSLVAKDAD 255
            EWL  AK+G G++KSETRR+ AET+YHRLL +ESM +AG+++LKDRRLEV+L+T+ K+G +L+RLT+L E+L  +E SL    A+
Sbjct:  323 EWLCSAKQGDGIQKSETRRDCAETDYHRLLFQESMLQAGMEILKDRRLEVSLKTLAKMGGDLERLTKLHEQLAEEEASLTTVSAE 407
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17729.5370.1 vs. uniprot
Match: D7FT01_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT01_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.500e-15
Identity = 43/78 (55.13%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:    1 EWLVVAKKGQGVKKSETRRENAETEYHRLLCEESMQEAGLKLLKDRRLEVALRTVGKLGEELDRLT----ELLEELGG 222
            EWL+ A +G  V+ SE RRE AETEYHRLL +ESM +AG+++LKDRRL V+L+ V K+G + +RLT    +L +E+GG
Sbjct:  250 EWLITATQGNAVQMSERRRETAETEYHRLLFQESMVQAGMEILKDRRLSVSLKAVAKMGGDFERLTNPHGQLAQEVGG 327
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17729.5370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KD39_9PHAE1.350e-4795.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIN4_ECTSI3.890e-3693.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTS2_ECTSI1.500e-2268.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4G1_9PHAE1.020e-2053.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMC3_ECTSI5.460e-2057.65Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FT01_ECTSI1.500e-1555.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17729contigEcto-sp13_S_contig17729:983..2750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score140.2
Seed ortholog evalue7.5e-31
Seed eggNOG ortholog2880.D7FIN4
Model size428
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2C7IG@1,2QWI0@2759
Cds size426
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462919.929821-CDS-Ecto-sp13_S_contig17729:982..10931681462919.929821-CDS-Ecto-sp13_S_contig17729:982..1093Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17729 983..1093 +
1681462919.9426222-CDS-Ecto-sp13_S_contig17729:1381..14951681462919.9426222-CDS-Ecto-sp13_S_contig17729:1381..1495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17729 1382..1495 +
1681462919.9566755-CDS-Ecto-sp13_S_contig17729:2547..27481681462919.9566755-CDS-Ecto-sp13_S_contig17729:2547..2748Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17729 2548..2748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17729.5370.1prot_Ecto-sp13_S_contig17729.5370.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17729 983..2748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17729.5370.1

>prot_Ecto-sp13_S_contig17729.5370.1 ID=prot_Ecto-sp13_S_contig17729.5370.1|Name=mRNA_Ecto-sp13_S_contig17729.5370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
EWLVVAKKGQGVKKSETRRENAETEYHRLLCEESMQEAGLKLLKDRRLEV
ALRTVGKLGEELDRLTELLEELGGQEMSLVAKDADAEQQESAQLESAAAV
AAEAATVAAEATEAAAEAAADANASPEAVDTEQMMERAAAAA
back to top

mRNA from alignment at Ecto-sp13_S_contig17729:983..2750+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17729.5370.1 ID=mRNA_Ecto-sp13_S_contig17729.5370.1|Name=mRNA_Ecto-sp13_S_contig17729.5370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1768bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17729:983..2750+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTGGTTGGTCGTGGCCAAGAAGGGGCAGGGGGTTAAGAAAAGCGAGAC
GAGGCGCGAGAACGCGGAGACAGAGTACCACCGCTTGCTCTGCGAAGAAT
CCATGCAGGAGGTAACCTAGCCGCAATGAGACTGACGTGTTCTCATTGGT
CGGCCTGAGAGCGCGGATACTACACGCGCGTTACTGCTTTTTTCCTCTCC
GTTTTTTTTTTCTCGGTGGTGTTGCGGGAGGTTGGTAGCCCCGGAAGAGA
AGATAGGCAAGCCTGCAGAACAAGCATCGAATACGACCCACCAAGCGCAC
TTTCCGCTGCCAATCGTTCCGAATTATCTGTTGTGATTTCTCAAGTCCCG
CCGCCTTTCCATTTTGTTTCTTGAATTGTTTAACAATCATGTGAAACAGG
CGGGCCTCAAGCTTCTCAAAGACCGCCGGCTGGAGGTGGCTCTGAGGACT
GTTGGGAAGCTGGGGGAAGAGCTGGATCGCCTGACCGAGCTCCTAGAGGA
GCTGGGCGGACAGGTGGGATGGAGAAATCGTTTTTATTTCGTTGCTTGCC
GGCTGGGCCCTTCCTTGCGAAGTGCCTACAGCAGTGGGGGTTCCCAAATA
CGGCTGTCGCCATGTATGAGGCGGGTGAAAGTGGCTGACATATACGGAAC
TATTCGAGTTATTCTACACGGTGAATAAGGCGGCAGTCCCATAGTAGGCG
ATCATTGTCAGCTGCCCCGCCACCGACTTATTCGGGGACCCGCACTGTAC
CTAGATCCCGCGCTGCTACACATACAGCACCAGGCCTTCAACTCTAGGTG
AGTGGGGGGTCCGCTGAGTGTAAAGGTTATTCGACCTGCCATCGGAGGCT
GGCTACTTCCTTCGGTGGAATGTGGCGAGGAATGCCAACCTGGACCGAGC
AAACTGATTCAGTCGAGCTTGTAAGGTGGTGTGGACAGTTGGGGCGAGCC
TTCGTGGACTCACTTTCCCACCCTCCCAAGACTCATCAACGGTTCGCAGC
TGTTGAGAATCAGAAGAGTAACGATCCTTGGAAGAGCAGTATTTAGTTAT
CTTGTCAGTATCGCACATCTCACACAGATCTATACTCTTGATGTATGCAT
GTCTATGTTCCATGAATACACCCTTTCCTGACCTCCACGCCTTCGTTGAA
TCAAAATCGCGGACGTTTGCCTGAGAGTGCACGTCGTGCTTTACTGCGTG
TCGATATCTCACTCAAAATAGTACTCCAGTCGTGGGTGTTGCTCCTAACC
CCCTGCCCCGCCGCCGCCGTTTCCGCAAAAAAAGACGGGAGGTATTATGG
GCCATCGGGTTCCTCACACGTCCCTTTAGAAGTGCAATTCAGATGAGCGA
TACCAAGAGAATGGGAGAAGCGAGGTATCGACAACGAAAGGAAACCACGT
GTGCGAGTGTGGAGAGGGGGTGCGTACAACATCACTGTCTGATTGCTGGC
GCTTTAACAAAGGTGGTGTTCGCACACCCGTCAGACTTGTGTTGTTTTTA
CTTCTTGTTGCACCGTGGCATCTGTTGCTCTCTCACACACGAACACACAC
TCACCCACGCATCAGGAAATGTCCCTCGTCGCGAAGGACGCCGACGCGGA
GCAACAGGAGTCGGCGCAACTAGAATCGGCGGCAGCCGTGGCAGCGGAGG
CGGCGACGGTAGCCGCGGAGGCAACAGAAGCAGCAGCAGAAGCGGCAGCA
GACGCAAACGCGTCCCCGGAAGCGGTCGACACCGAGCAGATGATGGAGCG
CGCAGCTGCGGCCGCAGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17729:983..2750+

>mRNA_Ecto-sp13_S_contig17729.5370.1 ID=mRNA_Ecto-sp13_S_contig17729.5370.1|Name=mRNA_Ecto-sp13_S_contig17729.5370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17729:983..2750+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTGGTTGGTCGTGGCCAAGAAGGGGCAGGGGGTTAAGAAAAGCGAGAC
GAGGCGCGAGAACGCGGAGACAGAGTACCACCGCTTGCTCTGCGAAGAAT
CCATGCAGGAGGCGGGCCTCAAGCTTCTCAAAGACCGCCGGCTGGAGGTG
GCTCTGAGGACTGTTGGGAAGCTGGGGGAAGAGCTGGATCGCCTGACCGA
GCTCCTAGAGGAGCTGGGCGGACAGGAAATGTCCCTCGTCGCGAAGGACG
CCGACGCGGAGCAACAGGAGTCGGCGCAACTAGAATCGGCGGCAGCCGTG
GCAGCGGAGGCGGCGACGGTAGCCGCGGAGGCAACAGAAGCAGCAGCAGA
AGCGGCAGCAGACGCAAACGCGTCCCCGGAAGCGGTCGACACCGAGCAGA
TGATGGAGCGCGCAGCTGCGGCCGCA
back to top