mRNA_Ecto-sp13_S_contig17723.5367.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17723.5367.1 vs. uniprot
Match: D8LN26_ECTSI (HA2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN26_ECTSI) HSP 1 Score: 270 bits (689), Expect = 7.530e-90 Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 1
Query: 1 QMDILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYKSADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 387
+MDILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYKSADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG
Sbjct: 128 KMDILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYKSADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 256
BLAST of mRNA_Ecto-sp13_S_contig17723.5367.1 vs. uniprot
Match: A0A6H5LEZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEZ0_9PHAE) HSP 1 Score: 270 bits (689), Expect = 1.510e-81 Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 1
Query: 1 QMDILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYKSADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 387
+MDILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYKSADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG
Sbjct: 1172 KMDILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYKSADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 1300
BLAST of mRNA_Ecto-sp13_S_contig17723.5367.1 vs. uniprot
Match: A0A835YV72_9STRA (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV72_9STRA) HSP 1 Score: 259 bits (661), Expect = 1.150e-77 Identity = 120/129 (93.02%), Postives = 128/129 (99.22%), Query Frame = 1
Query: 1 QMDILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYKSADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 387
+MDI++AGRNYNKVRRAIVSGYFTHAAKKDP+EGY TMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRN+MTIEPKWLVELAPQFY++ADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKR+G
Sbjct: 1200 KMDIVSAGRNYNKVRRAIVSGYFTHAAKKDPKEGYMTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNVMTIEPKWLVELAPQFYQAADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRRG 1328
BLAST of mRNA_Ecto-sp13_S_contig17723.5367.1 vs. uniprot
Match: A0A7S2Y0U7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0U7_9STRA) HSP 1 Score: 233 bits (593), Expect = 3.940e-75 Identity = 105/128 (82.03%), Postives = 122/128 (95.31%), Query Frame = 1
Query: 1 QMDILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYKSADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRK 384
+MDI+TAGRNYNKVR+AI +GYFTHAAKKDPQEGYRTM+EG VYIHPSSALFNK+PEWVLYHELVLTTKEYMRN++ IEPKWLVELAPQFY+++DPN +++ KRMQ+IEPLYDRFNPP+SWRLS+RK
Sbjct: 137 KMDIVTAGRNYNKVRKAICAGYFTHAAKKDPQEGYRTMLEGTIVYIHPSSALFNKNPEWVLYHELVLTTKEYMRNLLAIEPKWLVELAPQFYRASDPNYLSKAKRMQRIEPLYDRFNPPDSWRLSRRK 264
BLAST of mRNA_Ecto-sp13_S_contig17723.5367.1 vs. uniprot
Match: A0A7R9UAC0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAC0_9STRA) HSP 1 Score: 236 bits (603), Expect = 2.830e-71 Identity = 107/129 (82.95%), Postives = 124/129 (96.12%), Query Frame = 1
Query: 1 QMDILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYKSADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 387
+MDIL+AGRNY K++RAIV+GYFT+AAKKDPQEGYRTMVEGN VYIHPSSALFNKSPEWVLYHE+VLTTKEYMRNIM+IEPKWLVELAP FY+ ADP K+TRQKRM++IEPL+DR+NPP+SWRLS+R+G
Sbjct: 668 KMDILSAGRNYQKIQRAIVAGYFTNAAKKDPQEGYRTMVEGNVVYIHPSSALFNKSPEWVLYHEVVLTTKEYMRNIMSIEPKWLVELAPNFYRKADPTKLTRQKRMERIEPLFDRYNPPDSWRLSRRRG 796
BLAST of mRNA_Ecto-sp13_S_contig17723.5367.1 vs. uniprot
Match: A0A7S2D0M5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D0M5_9STRA) HSP 1 Score: 213 bits (543), Expect = 2.730e-69 Identity = 94/118 (79.66%), Postives = 113/118 (95.76%), Query Frame = 1
Query: 1 QMDILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYKSADPNKMTRQKRMQKIEPLYDRFNP 354
+MDI++AGRN+ KV+R++ +GYFT+AAKKDPQEGY+TM+EGNPVYIHPSSALFNK+PEW++YHELV+TTKEYMR +M+IEPKWLVELAPQFYKSADPN+MT+ KRM KIEPLYDRFNP
Sbjct: 23 KMDIVSAGRNFKKVQRSVTAGYFTNAAKKDPQEGYKTMIEGNPVYIHPSSALFNKNPEWLIYHELVMTTKEYMRAVMSIEPKWLVELAPQFYKSADPNRMTKAKRMMKIEPLYDRFNP 140
BLAST of mRNA_Ecto-sp13_S_contig17723.5367.1 vs. uniprot
Match: K3WHT1_GLOUD (RNA helicase n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WHT1_GLOUD) HSP 1 Score: 230 bits (587), Expect = 3.040e-68 Identity = 103/129 (79.84%), Postives = 120/129 (93.02%), Query Frame = 1
Query: 1 QMDILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYKSADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 387
+MD+++ G+N+NKVRRAIV+GYF + AKKDPQEGYRTMVEG PVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTI+PKWLVELAP F+K DP K+T++KR +KIEPLYDRFNPP++WRLSKR+G
Sbjct: 819 KMDVVSCGKNFNKVRRAIVAGYFANTAKKDPQEGYRTMVEGQPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIDPKWLVELAPAFFKKGDPTKLTKRKRNEKIEPLYDRFNPPDAWRLSKRRG 947
BLAST of mRNA_Ecto-sp13_S_contig17723.5367.1 vs. uniprot
Match: A0A5D6YAG5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YAG5_9STRA) HSP 1 Score: 231 bits (589), Expect = 4.600e-68 Identity = 105/129 (81.40%), Postives = 119/129 (92.25%), Query Frame = 1
Query: 1 QMDILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYKSADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 387
+MD+++ G+N NKVRRAIV+GYF + AKKDPQEGYRTMVEG PVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAP F+K DP K+T++KR +KIEPLYDRFNPP+SWRLSKR+G
Sbjct: 993 KMDVVSCGKNLNKVRRAIVAGYFANTAKKDPQEGYRTMVEGQPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPAFFKKGDPTKLTKRKRNEKIEPLYDRFNPPDSWRLSKRRG 1121
BLAST of mRNA_Ecto-sp13_S_contig17723.5367.1 vs. uniprot
Match: G4YNN0_PHYSP (RNA helicase n=22 Tax=Phytophthora TaxID=4783 RepID=G4YNN0_PHYSP) HSP 1 Score: 231 bits (589), Expect = 5.340e-68 Identity = 104/129 (80.62%), Postives = 120/129 (93.02%), Query Frame = 1
Query: 1 QMDILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYKSADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 387
+MD+++ G+N+NKVRRAIV+GYF + AKKDPQEGYRTMVEG PVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAP F+K DP K++++KR +KIEPLYDRFNPP+SWRLSKR+G
Sbjct: 1037 KMDVVSCGKNFNKVRRAIVAGYFANTAKKDPQEGYRTMVEGQPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPAFFKKGDPTKLSKRKRNEKIEPLYDRFNPPDSWRLSKRRG 1165
BLAST of mRNA_Ecto-sp13_S_contig17723.5367.1 vs. uniprot
Match: M4B3A8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B3A8_HYAAE) HSP 1 Score: 231 bits (589), Expect = 5.620e-68 Identity = 104/129 (80.62%), Postives = 120/129 (93.02%), Query Frame = 1
Query: 1 QMDILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYKSADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 387
+MD+++ G+N+NKVRRAIV+GYF + AKKDPQEGYRTMVEG PVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAP F+K DP K++++KR +KIEPLYDRFNPP+SWRLSKR+G
Sbjct: 1056 KMDVVSCGKNFNKVRRAIVAGYFANTAKKDPQEGYRTMVEGQPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPAFFKKGDPTKLSKRKRNEKIEPLYDRFNPPDSWRLSKRRG 1184 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17723.5367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17723.5367.1 >prot_Ecto-sp13_S_contig17723.5367.1 ID=prot_Ecto-sp13_S_contig17723.5367.1|Name=mRNA_Ecto-sp13_S_contig17723.5367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp MDILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSAback to top mRNA from alignment at Ecto-sp13_S_contig17723:1287..2063+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17723.5367.1 ID=mRNA_Ecto-sp13_S_contig17723.5367.1|Name=mRNA_Ecto-sp13_S_contig17723.5367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17723:1287..2063+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17723:1287..2063+ >mRNA_Ecto-sp13_S_contig17723.5367.1 ID=mRNA_Ecto-sp13_S_contig17723.5367.1|Name=mRNA_Ecto-sp13_S_contig17723.5367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17723:1287..2063+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |