mRNA_Ecto-sp13_S_contig17718.5362.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17718.5362.1
Unique NamemRNA_Ecto-sp13_S_contig17718.5362.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17718.5362.1 vs. uniprot
Match: D7FTF5_ECTSI (NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTF5_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.980e-39
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 1 
Query:    1 MAFRATQVVRMMVKKTSTGLVGLAVDVNARANFIALQKQILEKIKIIPDHAQYRKDVEAISGYRLKVATETED 219
            MAFRATQ VRM+VKKTSTGLVGLAVDVNARANFIALQKQILEKIK+IPDHAQYRKDVEAISGYRLKVATETED
Sbjct:    1 MAFRATQAVRMVVKKTSTGLVGLAVDVNARANFIALQKQILEKIKVIPDHAQYRKDVEAISGYRLKVATETED 73
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BLAST of mRNA_Ecto-sp13_S_contig17718.5362.1 vs. uniprot
Match: A0A7S2BEJ1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BEJ1_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.240e-18
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    4 AFRATQVVRMMVKKTSTGLVGLAVDVNARANFIALQKQILEKIKIIPDHAQYRKDVEAISGYRLKVATETED 219
            A R T+ V   V KTSTGLVGL VD+N RAN IA+Q+Q+LE +K IP+ A YR+ VEA + YRLKVATE  D
Sbjct:    7 ALRLTRPVAQAVHKTSTGLVGLKVDLNGRANLIAMQQQLLEAVKAIPETAAYRQSVEATATYRLKVATEETD 78
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BLAST of mRNA_Ecto-sp13_S_contig17718.5362.1 vs. uniprot
Match: A0A835Z296_9STRA (NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z296_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 8.020e-18
Identity = 45/64 (70.31%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:   10 RATQVVRMMVKKTSTGLVGLAVDVNARANFIALQKQILEKIKIIPDHAQYRKDVEAISGYRLKV 201
            RAT V R   KKTSTGLVGL VD NAR N    Q  ILEKIKIIP+H  YRK VEAIS YRLKV
Sbjct:   13 RATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKV 76
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BLAST of mRNA_Ecto-sp13_S_contig17718.5362.1 vs. uniprot
Match: A0A7S2WV54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV54_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 9.690e-16
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 MAFRATQVVRMMVKKTSTGLVGLAVDVNARANFIALQKQILEKI-KIIPDHAQYRKDVEAISGYRLKVATETED 219
            MA R T+ +R+ V KTSTGLVGL VDVNAR N I++Q Q+L    +++P+   YR  V A S YRLKVATE ++
Sbjct:    6 MALRLTRALRLAVSKTSTGLVGLPVDVNARVNLISMQSQVLAAAERLLPEGTAYRDSVVATSSYRLKVATEHQE 79
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BLAST of mRNA_Ecto-sp13_S_contig17718.5362.1 vs. uniprot
Match: A0A7S2SRG1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRG1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.340e-15
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 MAFRATQVVRMMVKKTSTGLVGLAVDVNARANFIALQKQILEKI-KIIPDHAQYRKDVEAISGYRLKVATETED 219
            MA R T+ +R+ V KTSTGLVGL VDVNAR N I++Q Q+L    +++P+   YR  V A S YRLKVATE ++
Sbjct:    6 MALRLTRALRLAVSKTSTGLVGLPVDVNARVNLISMQSQVLAAAERLLPEGTAYRDSVVATSSYRLKVATEHQE 79
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BLAST of mRNA_Ecto-sp13_S_contig17718.5362.1 vs. uniprot
Match: K3WST9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WST9_GLOUD)

HSP 1 Score: 72.4 bits (176), Expect = 8.480e-15
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   13 ATQVVRMMVKKTSTGLVGLAVDVNARANFIALQKQILEKIKIIPDHAQYRKDVEAISGYRLKVATETED 219
            AT+V+RM  KKT+TG+VGL V+ NAR + I + ++ L++IK++P++  YR  VE I+ YRLKV  E ED
Sbjct:    3 ATRVLRMAAKKTTTGIVGLPVNPNARQDLIKIYQKTLQEIKVLPENTVYRDSVERITNYRLKVTLENED 71
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BLAST of mRNA_Ecto-sp13_S_contig17718.5362.1 vs. uniprot
Match: A0A2D4BMW9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMW9_PYTIN)

HSP 1 Score: 72.0 bits (175), Expect = 1.230e-14
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:   13 ATQVVRMMVKKTSTGLVGLAVDVNARANFIALQKQILEKIKIIPDHAQYRKDVEAISGYRLKVATETED 219
            AT+V+RM V+KT+TG+VGL V+VNAR + IAL  + L+  + +P+   YRK VE I+ YRLKV  E ED
Sbjct:    3 ATRVLRMAVRKTTTGIVGLPVNVNARQDLIALYNKTLQAAQTLPEGIAYRKAVEQITNYRLKVVMENED 71
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BLAST of mRNA_Ecto-sp13_S_contig17718.5362.1 vs. uniprot
Match: A0A8K1FMG6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMG6_PYTOL)

HSP 1 Score: 72.0 bits (175), Expect = 1.230e-14
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   13 ATQVVRMMVKKTSTGLVGLAVDVNARANFIALQKQILEKIKIIPDHAQYRKDVEAISGYRLKVATETED 219
            AT+V+RM V+KTSTG+VGL V+ NAR + IA+ ++ L++++++PD   YR  VE I+ YRLKV  + ED
Sbjct:    3 ATRVLRMAVRKTSTGIVGLPVNPNARNDLIAIYQKTLKEVQVLPDGIAYRSAVEKITNYRLKVVLDNED 71
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BLAST of mRNA_Ecto-sp13_S_contig17718.5362.1 vs. uniprot
Match: A0A5D6XW11_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW11_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.700e-14
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   13 ATQVVRMMVKKTSTGLVGLAVDVNARANFIALQKQILEKIKIIPDHAQYRKDVEAISGYRLKVATETED 219
            AT+V+RM V KTSTG+VGL V+ NAR + I L ++ L+++K++P+ A YR  VE I+ YRLKV  + +D
Sbjct:    3 ATRVLRMAVTKTSTGIVGLPVNPNARQDLIKLYQKTLQEVKVLPEDAVYRDSVERITNYRLKVVLDNDD 71
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17718.5362.1 vs. uniprot
Match: A0A7S4E5V8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E5V8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.570e-12
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   28 RMMVKKTSTGLVGLAVDVNARANFIALQKQILEKIKIIPDHAQYRKDVEAISGYRLKVATETED 219
            R    KT+TG+VGL VD +AR   IAL +Q+L++IK +P+ A+YRK VEA   YRLK   E ED
Sbjct:   54 RAATTKTTTGIVGLPVDPHARETLIALNEQLLDEIKQVPEGAEYRKSVEATCNYRLKCLRENED 117
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17718.5362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTF5_ECTSI1.980e-3995.89NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus... [more]
A0A7S2BEJ1_9STRA1.240e-1861.11Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835Z296_9STRA8.020e-1870.31NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2WV54_9STRA9.690e-1654.05Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2SRG1_9STRA2.340e-1554.05Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K3WST9_GLOUD8.480e-1550.72Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BMW9_PYTIN1.230e-1453.62Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1FMG6_PYTOL1.230e-1450.72Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XW11_9STRA1.700e-1450.72Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S4E5V8_9STRA2.570e-1253.13Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17718contigEcto-sp13_S_contig17718:33..893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score75.1
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog115417.EPrPW00000016698
Preferred nameNDUFA5
Model size219
KEGG koko:K03949
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009507,GO:0009536,GO:0009853,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0065003,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Exons2
EggNOG free text desc.NADH dehydrogenase. Source PGD
EggNOG OGs1MHEE@121069,KOG3365@1,KOG3365@2759
Cds size219
COG Functional cat.C
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462919.4105444-CDS-Ecto-sp13_S_contig17718:32..1161681462919.4105444-CDS-Ecto-sp13_S_contig17718:32..116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17718 33..116 -
1681462919.4349818-CDS-Ecto-sp13_S_contig17718:758..8931681462919.4349818-CDS-Ecto-sp13_S_contig17718:758..893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17718 759..893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17718.5362.1prot_Ecto-sp13_S_contig17718.5362.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17718 33..893 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17718.5362.1

>prot_Ecto-sp13_S_contig17718.5362.1 ID=prot_Ecto-sp13_S_contig17718.5362.1|Name=mRNA_Ecto-sp13_S_contig17718.5362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
MAFRATQVVRMMVKKTSTGLVGLAVDVNARANFIALQKQILEKIKIIPDH
AQYRKDVEAISGYRLKVATETED
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mRNA from alignment at Ecto-sp13_S_contig17718:33..893-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17718.5362.1 ID=mRNA_Ecto-sp13_S_contig17718.5362.1|Name=mRNA_Ecto-sp13_S_contig17718.5362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=861bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17718:33..893- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTTCAGGGCGACGCAAGTGGTGCGAATGATGGTCAAGAAGACGTC
CACGGGGCTTGTGGGATTAGCTGTGGACGTCAACGCGCGAGCCAACTTCA
TCGCGTTGCAAAAACAGATCCTAGAGAAGATCAAGGTGAGGCTCGGCTGT
TGGCAGTGAGGTTGGACCGCCTACGCAGGATTCTAAGAGTATCTAGAAAA
AGAATTGGCAGGGGCACGCAGACCGTATAGCTAACCCTAACCCAACCCTA
CAGCACGGATTGAATACTTTATCCCGTACGTTTGCTTCATCAATTTTGCT
GCGTAGACTACTGGTGAGGTTGGTAGTACTGAGTTTGGCGTCGACGATGC
TGTTGGATATTGTTGTGGTGGCGATCAGTTAAAGGGCACACGGTAGCCGA
CGCTCTTTACCTGAGGCAACGGGCGATGCCGTTACGATGAATGTTGGCAC
CTGTGCGCAGGTGTACCGATTCTGGTAACAGTCAATCGACGGAACGCTGC
GAATCGGGTCTTCCTTAAACACCTGCGTGTGACTGCTGTTCCACGAAATT
GTACCTTTACTTCTACTGTCTTGTGCGTAAGACGGTGGCGTCTTATCCGT
AGACCCGCCCCCTTTGGCCGCAGTGGGGAACCTATCCCTCGGGAAGGTGC
TTCCTGCCTTGACCCGGTTCTCTACGCTACATGTGCTCAAACGCTTGCTT
GAACTTGTCGATCCGTTGGCTTACCTCCTAACGCTCCGCTCGCGTTGCAC
GGTATGATACGGTATGGTATGGTACAGATTATCCCGGATCACGCGCAATA
CCGGAAGGACGTGGAGGCTATCAGCGGGTACAGGCTCAAGGTGGCAACGG
AGACCGAGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17718:33..893-

>mRNA_Ecto-sp13_S_contig17718.5362.1 ID=mRNA_Ecto-sp13_S_contig17718.5362.1|Name=mRNA_Ecto-sp13_S_contig17718.5362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17718:33..893- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTTCAGGGCGACGCAAGTGGTGCGAATGATGGTCAAGAAGACGTC
CACGGGGCTTGTGGGATTAGCTGTGGACGTCAACGCGCGAGCCAACTTCA
TCGCGTTGCAAAAACAGATCCTAGAGAAGATCAAGATTATCCCGGATCAC
GCGCAATACCGGAAGGACGTGGAGGCTATCAGCGGGTACAGGCTCAAGGT
GGCAACGGAGACCGAGGAC
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