mRNA_Ecto-sp13_S_contig17707.5357.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17707.5357.1
Unique NamemRNA_Ecto-sp13_S_contig17707.5357.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17707.5357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17707contigEcto-sp13_S_contig17707:453..865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462918.930048-CDS-Ecto-sp13_S_contig17707:452..4891681462918.930048-CDS-Ecto-sp13_S_contig17707:452..489Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17707 453..489 +
1681462918.9409022-CDS-Ecto-sp13_S_contig17707:770..8651681462918.9409022-CDS-Ecto-sp13_S_contig17707:770..865Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17707 771..865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17707.5357.1prot_Ecto-sp13_S_contig17707.5357.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17707 453..865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17707.5357.1

>prot_Ecto-sp13_S_contig17707.5357.1 ID=prot_Ecto-sp13_S_contig17707.5357.1|Name=mRNA_Ecto-sp13_S_contig17707.5357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
MARQPDVVVGETGKVPGSNPALGEDRFIPDEESGRKSSRHGGHS
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mRNA from alignment at Ecto-sp13_S_contig17707:453..865+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17707.5357.1 ID=mRNA_Ecto-sp13_S_contig17707.5357.1|Name=mRNA_Ecto-sp13_S_contig17707.5357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=413bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17707:453..865+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCGGCAACCGGACGTCGTTGTTGGAGAAACAGGTGAGAGGGCACG
GCAATTTGTTTGCAACACGAGTCTAGTCTATGCCCAAAGTGTTGTTTTAT
TGGGAGTAGGAGTGTATGCAGGATGTTCCTGTTCCGGCGAGAATGTCGTA
TGTAGCCTGGCTGAACTACGCACTTGCTGTAGCTCAGTGCTGGCCTGTGT
GCCGAGCGACCGAACCAACGATAGCCTATGACCTATTACCACACCCGTCA
GGCATGCGGTTGTTTATCGGGAAAAATACGATTGATTATTGGAATCCACC
GTAAACCGTCCACGGCAGGGAAGGTACCGGGAAGCAATCCCGCTCTTGGC
GAGGATCGTTTCATCCCAGACGAAGAATCTGGGAGAAAATCATCAAGACA
CGGTGGACACTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17707:453..865+

>mRNA_Ecto-sp13_S_contig17707.5357.1 ID=mRNA_Ecto-sp13_S_contig17707.5357.1|Name=mRNA_Ecto-sp13_S_contig17707.5357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17707:453..865+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCGGCAACCGGACGTCGTTGTTGGAGAAACAGGGAAGGTACCGGG
AAGCAATCCCGCTCTTGGCGAGGATCGTTTCATCCCAGACGAAGAATCTG
GGAGAAAATCATCAAGACACGGTGGACACTCG
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