mRNA_Ecto-sp13_S_contig17681.5351.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17681.5351.1
Unique NamemRNA_Ecto-sp13_S_contig17681.5351.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17681.5351.1 vs. uniprot
Match: A0A835Z303_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z303_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.390e-24
Identity = 61/136 (44.85%), Postives = 82/136 (60.29%), Query Frame = 1 
Query:   88 HTIEGQIRRKKQENCLNKLLKEWGYTVDCETTINAKAGQCLTDTQRHFSRLDFRIVECVNAICIVECDEDQHFWYNLSCEMSRMADVRAALALAGYTLPIYWIRYAPTGKYCVEGKQVKTPRKQRGVALKEHLAKV 495
            HT EG  R+ KQ+  +  LLKE GYTVD E TI  + G C+ D  RH +RLD  IV   + I IVE DE+ H  Y +SCE++RM  V  A+   GYT+P+ ++RY P G    +G  +K  R++R V L E L +V
Sbjct:  342 HTKEGAKRQLKQQMRVANLLKEAGYTVDEECTI--QYGGCVPDPDRHRARLDIYIVTITSCILIVEVDEEAHASYLVSCELTRMLQVHEAILSRGYTVPVVFVRYNPNGCITKDGVCIKMTREEREVVLLEFLGRV 475
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BLAST of mRNA_Ecto-sp13_S_contig17681.5351.1 vs. uniprot
Match: A0A835YQ85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ85_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.120e-23
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 1 
Query:   88 HTIEGQIRRKKQENCLNKLLKEWGYTVDCETTINAKAGQCLTDTQRHFSRLDFRIVECVNAICIVECDEDQHFWYNLSCEMSRMADVRAALALAGYTLPIYWIRYAPTGKYCVEGKQVKTPRKQRGVALKEHLAKV 495
            H+ EG  R+ KQ+  + K+LKE GYTVD E TI      C+ D  RH +RLD  +V   + I IVE DE+ H  Y +SCE++RM  +  A+   GYT+P+ ++RY+P G    +G   +  RK+R VAL E L +V
Sbjct:  242 HSKEGAKRQLKQQMRVVKVLKEAGYTVDEECTIQYTG--CVPDPDRHHARLDVYVVTITSCILIVEVDEEAHASYLVSCEITRMLQMHEAILTRGYTVPVVFVRYSPNGAITRDGVYFEMTRKEREVALLEFLGRV 375
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BLAST of mRNA_Ecto-sp13_S_contig17681.5351.1 vs. uniprot
Match: A0A835Z3M2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3M2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.510e-13
Identity = 50/170 (29.41%), Postives = 87/170 (51.18%), Query Frame = 1 
Query:   88 HTIEGQIRRKKQENCLNKLLKEWGYTVDCETTINAKAGQCLTDTQRHFSRLDFRIVECVNAICIVECDEDQHFWYNLSCEMSRMADVRAALALAGYTL----------------PIYWIRYAPTGKYCVEGKQVKTPRKQRGVALKEHLAKVCSPDFT---PTKQVYVHY 540
            HT+EGQ ++ ++++ + ++L E  YTVD E  +  + G C+ D  +  +R+D+ ++   NAI IVECDE  H  Y L+CE+SRM  +  A+  A +++                P+ ++R+ P   + V+G++  + R  R   L E L  +         P   VY+ Y
Sbjct:  226 HTVEGQQKKIRKQDRVRQVL-ESAYTVDSECHVRYQGG-CVPDPDKFCARIDYHVLGITNAIVIVECDEQGHKDYTLTCELSRMEQIHEAIIKANFSMVVAKAGEAYALTASMKPVVFVRFNPD-PWKVDGEKELSRRCDREAVLLEVLQDISDGTLELPHPLNLVYIGY 392
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BLAST of mRNA_Ecto-sp13_S_contig17681.5351.1 vs. uniprot
Match: A0A2J7ZLC9_9CHLO (Zinc finger protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZLC9_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 6.860e-13
Identity = 59/215 (27.44%), Postives = 97/215 (45.12%), Query Frame = 1 
Query:    7 EKPFVCDFEGCDYACSQTTNLNTHKKTHTIE------------------------GQIRRKKQENCLNKLLKEWGYTVDCETTINAKAGQ----CLTDTQRHFSRLDFRIVECVNAICIVECDEDQH---FWYNLSCEMSRMADVRAALALAGYTLPIYWIRYAPTGKYCVEGKQVKTPRKQRGVALKEHLAKVCSPDFTPTKQVYVHYMFYKLV 558
            EKP+ CD+ GCD A +++ NL  HK+THT E                          +   + +    K  +     +D    +  +  Q    C+ D    ++R+DF IV     +  +E DE+QH    + + SC+M RM+ +  +LA  G TLP+ ++RY P   + V GK VK  +  R   L   L    S  F+  + + + Y++Y +V
Sbjct:  124 EKPYACDYPGCDAAFARSGNLVHHKRTHTGEXXXXXXXXXXXXXXXXXXXXXXXXSSLHSPEGQARQKKQEQRVARALDRAGILYKREHQIDFRCIGDHAGFWARVDFVIV-LHGRVIFLEVDEEQHKFGSYGSASCDMKRMSRILESLADGGNTLPLVFLRYNPN-VFTVNGKVVKKLKAARESELVSLLENPASEVFSCDRPIVIQYLYYDVV 336
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17681.5351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z303_9STRA3.390e-2444.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQ85_9STRA1.120e-2342.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3M2_9STRA2.510e-1329.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2J7ZLC9_9CHLO6.860e-1327.44Zinc finger protein n=1 Tax=Tetrabaena socialis Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17681contigEcto-sp13_S_contig17681:23..622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size600
Hectar predicted targeting categoryother localisation
Exons1
Cds size600
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462918.2752068-CDS-Ecto-sp13_S_contig17681:22..6221681462918.2752068-CDS-Ecto-sp13_S_contig17681:22..622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17681 23..622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17681.5351.1prot_Ecto-sp13_S_contig17681.5351.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17681 23..622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17681.5351.1

>prot_Ecto-sp13_S_contig17681.5351.1 ID=prot_Ecto-sp13_S_contig17681.5351.1|Name=mRNA_Ecto-sp13_S_contig17681.5351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
SNEKPFVCDFEGCDYACSQTTNLNTHKKTHTIEGQIRRKKQENCLNKLLK
EWGYTVDCETTINAKAGQCLTDTQRHFSRLDFRIVECVNAICIVECDEDQ
HFWYNLSCEMSRMADVRAALALAGYTLPIYWIRYAPTGKYCVEGKQVKTP
RKQRGVALKEHLAKVCSPDFTPTKQVYVHYMFYKLVSYEDGPEIMLDTGF
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mRNA from alignment at Ecto-sp13_S_contig17681:23..622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17681.5351.1 ID=mRNA_Ecto-sp13_S_contig17681.5351.1|Name=mRNA_Ecto-sp13_S_contig17681.5351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17681:23..622+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAATGAAAAGCCTTTTGTGTGTGACTTCGAGGGGTGCGACTACGCGTG
CTCGCAAACCACAAATCTGAACACACACAAAAAGACTCACACCATCGAGG
GCCAGATTCGTCGCAAGAAACAAGAGAACTGCCTGAACAAGCTACTCAAG
GAGTGGGGCTACACAGTCGACTGCGAGACAACCATCAACGCAAAAGCTGG
GCAGTGTCTGACGGACACCCAGCGACACTTCTCGAGGCTGGATTTTCGGA
TCGTGGAGTGCGTCAACGCCATATGTATCGTTGAGTGCGATGAGGACCAG
CACTTTTGGTACAATCTATCGTGCGAGATGAGCCGGATGGCAGACGTTCG
TGCGGCGCTGGCGCTGGCCGGGTACACACTGCCGATCTACTGGATTCGCT
ACGCCCCCACGGGCAAGTATTGCGTGGAAGGGAAACAGGTCAAGACCCCG
CGAAAGCAACGCGGGGTAGCGCTGAAGGAACACCTCGCCAAAGTCTGTTC
TCCCGACTTTACGCCCACCAAACAAGTGTATGTGCATTACATGTTTTACA
AATTGGTTTCATATGAGGATGGGCCCGAAATAATGCTTGATACTGGCTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17681:23..622+

>mRNA_Ecto-sp13_S_contig17681.5351.1 ID=mRNA_Ecto-sp13_S_contig17681.5351.1|Name=mRNA_Ecto-sp13_S_contig17681.5351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17681:23..622+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAATGAAAAGCCTTTTGTGTGTGACTTCGAGGGGTGCGACTACGCGTG
CTCGCAAACCACAAATCTGAACACACACAAAAAGACTCACACCATCGAGG
GCCAGATTCGTCGCAAGAAACAAGAGAACTGCCTGAACAAGCTACTCAAG
GAGTGGGGCTACACAGTCGACTGCGAGACAACCATCAACGCAAAAGCTGG
GCAGTGTCTGACGGACACCCAGCGACACTTCTCGAGGCTGGATTTTCGGA
TCGTGGAGTGCGTCAACGCCATATGTATCGTTGAGTGCGATGAGGACCAG
CACTTTTGGTACAATCTATCGTGCGAGATGAGCCGGATGGCAGACGTTCG
TGCGGCGCTGGCGCTGGCCGGGTACACACTGCCGATCTACTGGATTCGCT
ACGCCCCCACGGGCAAGTATTGCGTGGAAGGGAAACAGGTCAAGACCCCG
CGAAAGCAACGCGGGGTAGCGCTGAAGGAACACCTCGCCAAAGTCTGTTC
TCCCGACTTTACGCCCACCAAACAAGTGTATGTGCATTACATGTTTTACA
AATTGGTTTCATATGAGGATGGGCCCGAAATAATGCTTGATACTGGCTTT
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