mRNA_Ecto-sp13_S_contig17676.5347.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17676.5347.1
Unique NamemRNA_Ecto-sp13_S_contig17676.5347.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17676.5347.1 vs. uniprot
Match: A0A6H5L4F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4F7_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 7.800e-27
Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 1
Query:   19 FQVVCMFILMVVARTQELQSCSVDAVPSTISSTQDADTLATSILACPNGSFFVEWVGEIFVAETIHVTDGTSLNITGSGSGAIADGRDATQLFIVD 306
            FQVVCM +L  VA+TQ LQ+CSVD  P  ++ST+DA  LA SI+ C NG   V WVGE+ V ETI V  GTSLNITG+G GAIADG   TQ+FI D
Sbjct:    4 FQVVCMGLLAAVAQTQVLQNCSVDTSPVMVASTEDAAALAASIIGCSNGDIAVAWVGEVVVEETIFVIGGTSLNITGAGPGAIADGGGETQVFIAD 99          
BLAST of mRNA_Ecto-sp13_S_contig17676.5347.1 vs. uniprot
Match: A0A6H5L9I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I1_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.310e-22
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   22 QVVCMFILMVVARTQELQSCSVDAVPSTISSTQDADTLATSILACPNGSFFVEWVGEIFVAETIHVTDGTSLNITGSGSGAIADGRDATQLFI 300
            QVVCM  +  VAR+QELQ C+V     T+ ST DAD LA S++ C NG F V+W  E+FV  TI V+DGTSLNITG+G GAIADG  +TQL +
Sbjct:    5 QVVCMGYIAAVARSQELQECNVANRSLTVGSTGDADDLANSVI-CSNGDFNVQWDEEVFVTTTIRVSDGTSLNITGTGPGAIADGGGSTQLAL 96          
BLAST of mRNA_Ecto-sp13_S_contig17676.5347.1 vs. uniprot
Match: A0A6H5J7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.240e-22
Identity = 52/96 (54.17%), Postives = 67/96 (69.79%), Query Frame = 1
Query:   19 FQVVCMFILMVVARTQELQSCSVDAVPSTISSTQDADTLATSILACPNGSFFVEWVGEIFVAETIHVTDGTSLNITGSGSGAIADGRDATQLFIVD 306
            F+V+ + +L V+A  QELQ C++D    T+ S++D   L    L C NG F VEWVG++FV ETI +T GTSLNITG G GAIADG++ TQLF VD
Sbjct:    4 FEVLFVCLLAVIAPAQELQECTLDTGSLTVGSSEDVADLI-GFLNCSNGDFSVEWVGDVFVTETIRITSGTSLNITGDGPGAIADGQNITQLFYVD 98          
BLAST of mRNA_Ecto-sp13_S_contig17676.5347.1 vs. uniprot
Match: D7G1E0_ECTSI (EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E0_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 2.250e-22
Identity = 55/95 (57.89%), Postives = 68/95 (71.58%), Query Frame = 1
Query:   22 QVVCMFILMVVARTQELQSCSVDAVPSTISSTQDADTLATSILACPNGSFFVEWVGEIFVAETIHVTDGTSLNITGSGSGAIADGRDATQLFIVD 306
            QVV M  +  VAR+QELQ CSV     T+S T+D+  LA S+L C NG F V+W  E+FV  TI V+DGTSLNITG+G GAIADG  +TQLF+V+
Sbjct:  201 QVVSMGYMAAVARSQELQECSVVTSFRTVSRTEDSADLANSVL-CSNGDFIVQWDEEVFVTATIRVSDGTSLNITGTGPGAIADGGGSTQLFVVE 294          
BLAST of mRNA_Ecto-sp13_S_contig17676.5347.1 vs. uniprot
Match: D7FM10_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM10_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 6.020e-20
Identity = 51/96 (53.12%), Postives = 67/96 (69.79%), Query Frame = 1
Query:   19 FQVVCMFILMVVARTQELQSCSVDAVPSTISSTQDADTLATSILACPNGSFFVEWVGEIFVAETIHVTDGTSLNITGSGSGAIADGRDATQLFIVD 306
            FQ + +  L+ VA  Q    CS+D    T++S++DA TLAT +L C +G F V+WVGE+ V ETI VT+GTSLNITG GSGA A+G   TQLF+V+
Sbjct:   56 FQALNVGFLVAVATAQATLPCSLDTSLWTVASSEDAVTLAT-LLRCSDGDFAVQWVGEVIVTETIRVTNGTSLNITGDGSGATANGDHTTQLFVVE 150          
BLAST of mRNA_Ecto-sp13_S_contig17676.5347.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.140e-17
Identity = 48/89 (53.93%), Postives = 62/89 (69.66%), Query Frame = 1
Query:   40 ILMVVARTQELQSCSVDAVPSTISSTQDADTLATSILACPNGSFFVEWVGEIFVAETIHVTDGTSLNITGSGSGAIADGRDATQLFIVD 306
            +L  VAR+Q LQ CS+DA    + +T  A  LAT+ L   +G   V WVGE+ VA+TI VT+G SLNITG+G GA+ADG++ TQLF VD
Sbjct:   12 LLAPVARSQGLQDCSLDASTFIMDTTDQATLLATA-LGFLDGGLSVCWVGEVIVADTIRVTNGKSLNITGAGPGAVADGQNVTQLFYVD 99          
BLAST of mRNA_Ecto-sp13_S_contig17676.5347.1 vs. uniprot
Match: A0A6H5JL43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL43_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 5.210e-14
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 1
Query:  139 TSILACPNGSFFVEWVGEIFVAETIHVTDGTSLNITGSGSGAIADGRDATQLFIVD 306
            TSIL   NG F V WVGEIFVAETI V +GTSLN+TG+G GAIADG  +TQLF VD
Sbjct:   20 TSILYA-NGDFSVRWVGEIFVAETIRVINGTSLNVTGAGPGAIADGSGSTQLFAVD 74          
BLAST of mRNA_Ecto-sp13_S_contig17676.5347.1 vs. uniprot
Match: A0A6H5JWT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT9_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.970e-11
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   34 MFILMVVARTQELQSCSVDAVPSTISSTQDADTLATSILACPNGSFFVEWVGEIFVAETIHVTDGTSLNITGS---GSGAIADGRDATQLF 297
            + +L    + Q L  CS     ST++ST  A +LA+S L C NG F VEW GE+ VA TIHV +GTSL ITG+   GSG I DG   TQL 
Sbjct:   14 LLLLPAFGQGQALLPCSAGTSRSTVTSTAGAASLASS-LECSNGDFAVEWDGEVVVARTIHVFEGTSLTITGAAGRGSG-IMDGNHETQLI 102          
BLAST of mRNA_Ecto-sp13_S_contig17676.5347.1 vs. uniprot
Match: D8LHW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHW0_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.290e-8
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query:  187 GEIFVAETIHVTDGTSLNITGSGSGAIADGRDATQLFIVD 306
            GE+FV ETI VT+GTSLNITG+G  AIADG+D T+LF VD
Sbjct:    7 GEVFVNETIRVTNGTSLNITGAGPSAIADGQDTTRLFYVD 46          
BLAST of mRNA_Ecto-sp13_S_contig17676.5347.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 8.960e-8
Identity = 31/51 (60.78%), Postives = 34/51 (66.67%), Query Frame = 1
Query:  154 CPNGSFFVEWVGEIFVAETIHVTDGTSLNITGS-GSGAIADGRDATQLFIV 303
            C  GSF VEWVG + V ETI VTDGT L ITG+ GS A  DG   T+LF V
Sbjct:  242 CSGGSFEVEWVGTVVVNETIFVTDGTVLTITGAAGSNAALDGNSVTRLFTV 292          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17676.5347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5L4F7_9PHAE7.800e-2761.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L9I1_9PHAE1.310e-2258.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7J9_9PHAE2.240e-2254.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1E0_ECTSI2.250e-2257.89EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
D7FM10_ECTSI6.020e-2053.13Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
A0A6H5KX12_9PHAE4.140e-1753.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL43_9PHAE5.210e-1471.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWT9_9PHAE1.970e-1149.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHW0_ECTSI1.290e-872.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSC0_ECTSI8.960e-860.78Polymorphic Outer membrane protein G/I family n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17676contigEcto-sp13_S_contig17676:2129..2437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score61.6
Seed ortholog evalue2.4e-07
Seed eggNOG ortholog2880.D8LHQ8
Model size310
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG OGs2BFIX@1,2S176@2759
Cds size309
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462917.912169-CDS-Ecto-sp13_S_contig17676:2128..24371681462917.912169-CDS-Ecto-sp13_S_contig17676:2128..2437Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17676 2129..2437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17676.5347.1prot_Ecto-sp13_S_contig17676.5347.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17676 2129..2437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17676.5347.1

>prot_Ecto-sp13_S_contig17676.5347.1 ID=prot_Ecto-sp13_S_contig17676.5347.1|Name=mRNA_Ecto-sp13_S_contig17676.5347.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MTQRWGFQVVCMFILMVVARTQELQSCSVDAVPSTISSTQDADTLATSIL
ACPNGSFFVEWVGEIFVAETIHVTDGTSLNITGSGSGAIADGRDATQLFI
VDR
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mRNA from alignment at Ecto-sp13_S_contig17676:2129..2437+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17676.5347.1 ID=mRNA_Ecto-sp13_S_contig17676.5347.1|Name=mRNA_Ecto-sp13_S_contig17676.5347.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17676:2129..2437+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCAGAGATGGGGTTTCCAGGTTGTGTGCATGTTCATCCTGATGGT CGTTGCTCGTACCCAAGAGCTTCAGAGTTGCAGCGTTGACGCTGTCCCTT CCACCATTAGCAGCACCCAAGACGCGGATACTCTGGCGACCTCGATTCTT GCATGTCCGAACGGCAGCTTCTTCGTTGAGTGGGTTGGGGAAATATTTGT TGCAGAAACAATCCACGTCACCGATGGCACATCGCTCAACATCACTGGGA GTGGGTCAGGCGCGATTGCGGATGGACGTGACGCAACGCAGCTGTTCATC GTAGACCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17676:2129..2437+

>mRNA_Ecto-sp13_S_contig17676.5347.1 ID=mRNA_Ecto-sp13_S_contig17676.5347.1|Name=mRNA_Ecto-sp13_S_contig17676.5347.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17676:2129..2437+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCAGAGATGGGGTTTCCAGGTTGTGTGCATGTTCATCCTGATGGT
CGTTGCTCGTACCCAAGAGCTTCAGAGTTGCAGCGTTGACGCTGTCCCTT
CCACCATTAGCAGCACCCAAGACGCGGATACTCTGGCGACCTCGATTCTT
GCATGTCCGAACGGCAGCTTCTTCGTTGAGTGGGTTGGGGAAATATTTGT
TGCAGAAACAATCCACGTCACCGATGGCACATCGCTCAACATCACTGGGA
GTGGGTCAGGCGCGATTGCGGATGGACGTGACGCAACGCAGCTGTTCATC
GTAGACCGG
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