prot_Ecto-sp13_S_contig17676.5348.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17676.5348.1
Unique Nameprot_Ecto-sp13_S_contig17676.5348.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length163
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17676.5348.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 120..136
e-value: 4.0E-5
score: 21.3
coord: 29..53
e-value: 6.8E-6
score: 23.7
coord: 149..162
e-value: 6.9E-4
score: 17.4
coord: 61..82
e-value: 2.3E-4
score: 18.9
coord: 88..108
e-value: 9.5E-4
score: 16.9
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 147..162
e-value: 0.0022
score: 18.4
coord: 25..48
e-value: 0.16
score: 12.5
coord: 121..135
e-value: 0.0016
score: 18.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17676contigEcto-sp13_S_contig17676:2447..2935 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17676.5348.1mRNA_Ecto-sp13_S_contig17676.5348.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17676 2447..2935 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17676.5348.1 ID=prot_Ecto-sp13_S_contig17676.5348.1|Name=mRNA_Ecto-sp13_S_contig17676.5348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
LDISDVTFTHGNASLGGAVNVFEANVSFSGNTLFIANVASADGGAIYAHD
ATVSWDGDGTKFISNTAGGNGGAITATSSTVLSWGGDDTEFISNTAGRNG
GALNADLFSTVFSWDGHGTKFSNNSAGGDGGAICSDFSIVSWDGDGAEFS
NNSAGGEGGAIYY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat