mRNA_Ecto-sp13_S_contig17650.5339.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17650.5339.1
Unique NamemRNA_Ecto-sp13_S_contig17650.5339.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17650.5339.1 vs. uniprot
Match: A0A6H5K163_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K163_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 4.710e-32
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:   25 VQLNSGRWTDEEHQGFLRGLEVYGHGNWNAIAVFVPSRSPPQIEAYAQLYFAQGEAARNFQQ 210
            VQLN GRWTDEEHQGFL GLEVYGHGNWNAIAVFVP+RSPPQIEAYA+ YFA GEA +N QQ
Sbjct:   16 VQLNGGRWTDEEHQGFLSGLEVYGHGNWNAIAVFVPTRSPPQIEAYARQYFALGEAVQNLQQ 77
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BLAST of mRNA_Ecto-sp13_S_contig17650.5339.1 vs. uniprot
Match: D7G877_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G877_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.460e-28
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:   22 RVQLNSGRWTDEEHQGFLRGLEVYGHGNWNAIAVFVPSRSPPQIEAYAQLYFAQGEAARNFQQ 210
            RV LNSG WTDEEH+GFLRGLEVYGHGNWNA+AVFV SRSPPQIEAYAQ Y A+ E A + QQ
Sbjct:    2 RVPLNSGTWTDEEHKGFLRGLEVYGHGNWNAMAVFVLSRSPPQIEAYAQDYMAEKETAHDLQQ 64
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BLAST of mRNA_Ecto-sp13_S_contig17650.5339.1 vs. uniprot
Match: D7G876_ECTSI (MYB DNA binding protein/ transcription factor-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G876_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 8.910e-25
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:   25 VQLNSGRWTDEEHQGFLRGLEVYGHGNWNAIAVFVPSRSPPQIEAYAQLYFAQ 183
            +  + GRWTDEEHQGFL GLEVYG+GNW+AIAVFVPSRSPPQIEAYAQ Y AQ
Sbjct:   19 LDTSGGRWTDEEHQGFLHGLEVYGYGNWDAIAVFVPSRSPPQIEAYAQQYVAQ 71
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BLAST of mRNA_Ecto-sp13_S_contig17650.5339.1 vs. uniprot
Match: D7G878_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G878_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 9.990e-24
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   25 VQLNSGRWTDEEHQGFLRGLEVYGHGNWNAIAVFVPSRSPPQIEAYAQLYFAQGEAARNFQQ 210
            V  N G WTD EHQGFLRGLEVYG+GN +AI +FVPSRSP QIEAYAQ YFA+GEA R+  Q
Sbjct:   15 VPFNCGTWTDVEHQGFLRGLEVYGYGNCDAIGIFVPSRSPLQIEAYAQWYFAEGEAVRHLHQ 76
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BLAST of mRNA_Ecto-sp13_S_contig17650.5339.1 vs. uniprot
Match: D7FPI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI5_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 5.660e-23
Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   22 RVQLNSGRWTDEEHQGFLRGLEVYGHGNWNAIAVFVPSRSPPQIEAYAQLYFAQGEAARN 201
            R+ L +  WT++EH GFL GLEVYG+GNW+AIAVFVPSRS PQIEAYAQ Y AQGE+  +
Sbjct:    5 RIPLTTEGWTEDEHNGFLHGLEVYGYGNWDAIAVFVPSRSSPQIEAYAQQYVAQGESVHS 64
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BLAST of mRNA_Ecto-sp13_S_contig17650.5339.1 vs. uniprot
Match: A0A6H5JDE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE4_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.640e-21
Identity = 42/62 (67.74%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:   25 VQLNSGRWTDEEHQGFLRGLEVYGHGNWNAIAVFVPSRSPPQIEAYAQLYFAQGEAARNFQQ 210
            V  N G WTD EHQGFLRGLEVYG+GN +AI +FVPSRSP QIEAYAQ + A+ EA R+  Q
Sbjct:   10 VPFNCGTWTDVEHQGFLRGLEVYGYGNCDAIGIFVPSRSPLQIEAYAQWHLAEVEAVRHLHQ 71
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BLAST of mRNA_Ecto-sp13_S_contig17650.5339.1 vs. uniprot
Match: A0A3L6G600_MAIZE (Transcription factor DIVARICATA n=3 Tax=Zea mays TaxID=4577 RepID=A0A3L6G600_MAIZE)

HSP 1 Score: 63.5 bits (153), Expect = 8.420e-10
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   46 WTDEEHQGFLRGLEVYGHGNWNAIA-VFVPSRSPPQIEAYAQLYFAQGE 189
            WT +EH+ FLRGLEVYG GNW  I+  FVP+R+P QI ++AQ YF + E
Sbjct:  158 WTQDEHKNFLRGLEVYGRGNWKNISKYFVPTRTPIQICSHAQKYFHRKE 206
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BLAST of mRNA_Ecto-sp13_S_contig17650.5339.1 vs. uniprot
Match: A0A6S8K8Y0_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8K8Y0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.600e-10
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   34 NSGRWTDEEHQGFLRGLEVYGHGNWNAIAVFVPSRSPPQIEAYAQLYFA 180
            ++GRWTDEEHQ FLRGL  YG   W  +A  +P+RS  Q+ ++AQ YFA
Sbjct:  234 STGRWTDEEHQAFLRGLHTYGR-EWKKVASHIPTRSSAQVRSHAQKYFA 281
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BLAST of mRNA_Ecto-sp13_S_contig17650.5339.1 vs. uniprot
Match: UPI000E1C29DD (transcription factor DIVARICATA n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=UPI000E1C29DD)

HSP 1 Score: 61.2 bits (147), Expect = 2.480e-9
Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   46 WTDEEHQGFLRGLEVYGHGNWNAIAV-FVPSRSPPQIEAYAQLYFAQGEAA 195
            WT EEH+ FLRGL VYG G W +I++ FV S++P Q+ ++AQ YF + E+A
Sbjct:   88 WTTEEHRQFLRGLRVYGRGEWKSISMNFVRSKTPVQVSSHAQKYFRRVESA 138
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BLAST of mRNA_Ecto-sp13_S_contig17650.5339.1 vs. uniprot
Match: A3B8V8_ORYSJ (Uncharacterized protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A3B8V8_ORYSJ)

HSP 1 Score: 61.6 bits (148), Expect = 3.660e-9
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   40 GRWTDEEHQGFLRGLEVYGHGNWNAIAV-FVPSRSPPQIEAYAQLYFAQGEAA 195
            G WT EEH+ FLRGL VYG G W +I++ FV S++P Q+ ++AQ YF + E+A
Sbjct:  184 GFWTTEEHRQFLRGLRVYGRGEWKSISMNFVRSKTPVQVSSHAQKYFRRVESA 236
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17650.5339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K163_9PHAE4.710e-3285.48MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G877_ECTSI1.460e-2879.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G876_ECTSI8.910e-2581.13MYB DNA binding protein/ transcription factor-like... [more]
D7G878_ECTSI9.990e-2472.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FPI5_ECTSI5.660e-2368.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDE4_9PHAE2.640e-2167.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3L6G600_MAIZE8.420e-1059.18Transcription factor DIVARICATA n=3 Tax=Zea mays T... [more]
A0A6S8K8Y0_9STRA8.600e-1055.10Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
UPI000E1C29DD2.480e-952.94transcription factor DIVARICATA n=2 Tax=Oryza sati... [more]
A3B8V8_ORYSJ3.660e-952.83Uncharacterized protein n=1 Tax=Oryza sativa subsp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17650contigEcto-sp13_S_contig17650:483..3512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start0
Seed ortholog score63.5
Seed ortholog evalue5.6e-08
Seed eggNOG ortholog4577.GRMZM2G422083_P01
Model size268
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
EggNOG OGs382MW@33090,3GRDR@35493,3IR39@38820,3M6MH@4447,KOG0724@1,KOG0724@2759
Cds size267
COG Functional cat.K
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462917.234825-CDS-Ecto-sp13_S_contig17650:482..5051681462917.234825-CDS-Ecto-sp13_S_contig17650:482..505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17650 483..505 +
1681462917.2449992-CDS-Ecto-sp13_S_contig17650:2484..26711681462917.2449992-CDS-Ecto-sp13_S_contig17650:2484..2671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17650 2485..2671 +
1681462917.255129-CDS-Ecto-sp13_S_contig17650:3454..35111681462917.255129-CDS-Ecto-sp13_S_contig17650:3454..3511Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17650 3455..3511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17650.5339.1prot_Ecto-sp13_S_contig17650.5339.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17650 483..3511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17650.5339.1

>prot_Ecto-sp13_S_contig17650.5339.1 ID=prot_Ecto-sp13_S_contig17650.5339.1|Name=mRNA_Ecto-sp13_S_contig17650.5339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
TTSSRDRRVQLNSGRWTDEEHQGFLRGLEVYGHGNWNAIAVFVPSRSPPQ
IEAYAQLYFAQGEAARNFQQEVRGVPQQQQPPPQQQYQQ
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mRNA from alignment at Ecto-sp13_S_contig17650:483..3512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17650.5339.1 ID=mRNA_Ecto-sp13_S_contig17650.5339.1|Name=mRNA_Ecto-sp13_S_contig17650.5339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3030bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17650:483..3512+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGACTTCTTCGAGAGATAGAAGGCGAAATGATGTCGCGTGGGCGTGTGG
CGTGTACAGAGTTCCTGTGCCAAATCGCGTGTGTTGCTCACGGTACCACC
CCTTGCCAGCTAATTGAAGCCAACAATCACACCCGCAGGAGGCCAGACAG
AGTTACTGTAGAAAGTCCCTTCGCTGCTGTGGGCGGTTAGACTACAGCCC
TTGGCTCATTCGCAATCCGCGAGTAAGAAACATGGGCAACACGAGCAGCA
GACTACTTGTAAATGGTACCTCCAAGATCAAACTATGTAGCTCCATAACT
GGCTCTACGTGTGTGGCCGACGTGGCCGACACCAGACGGGTCCCTGGTAT
CTATCACAACCAGCCGAGAGGAGACCTCCCGATGTTCTGTTCGATCTGAG
TGGCGTTCCGTGTTCGTTCGTCTTTGATGCTGTGCTTGCTTTTGCGAATG
ACTTGATTGGACAGAAACACTTCCTCCGCCTCTCGGAAGTAGGAGGGAAA
ATACCTCGCAACATGCACAGCAGCAGTGTACAAACCGATACCGAAAAAAG
CGGCACGAAAAGTAGTAGACCACCACGTTGATTTACCGGTTGCGAGCGAA
ACGACCGAAAAGGACGCGATGTCGTTGTTGGACGTACTCACAGCATCGAC
AGATTATTGCAAGCAAGATTTCCGAGCATATGGAGCGGGGAGTTTGGGGG
TTCAGCAGTTGCTATGGATTAGATTTGGTACAACTCTACGAACTTTGCCA
CATAACAGGATTAAGGGTTGGGGTATGTGTGTGTCTACAACGGATATGGT
GGTTCTGTTATGTGGCTGCCCCCTGTTCTTATAGACTTATCTTTACTCTT
CCTGTAGGCAATCAAGTCCTTTCTCCCCGGCTATCACGCTACCACGGCTA
TCACGCCACGGTTGCCACGCCAATCCCGGCTATCACGCCACCCGGCTACC
ACGCCTTCTGGACTTCCCCATCCTTGCATATACCTTTGCACCACGGCTAT
CACGCCAACAGGCTTCCACGCCACATTCAGAGATACCTATACCCGAGCTG
TCACGCTCCATCCCAAAGTAGAAGGCTATCACCCTAATAATAGTTCCTCT
ATTGTACCGTTGGCGGCTACCACGCCGCTGGCTCCTTTATTTCCCAACCA
CGGAACCCCGCGCGCCAAAGCACCGACAGACAAAGCTACTCAACAGCCAT
ACCAAGCCTTGCCTGGGTGTCACTTTTGCGGAAAGGAGTTTATTGAGAGA
TATTGGTTGAGGTTTCAACATTTTCTCTTCTCTCTCATACTGCAGTGTGC
TCGAATGACGAGCGTGCATGTTCCCTTGCCATCAGAAAACATGTGTTGAC
CACGTCAATGTATAGTCTAGCCACAAAGATGTAGGGGACAATTTATTGAC
ACACCGATAGAGACGACCAGAAATGTCGTTGCTGCCCTCGGCGCAGCACG
TTTTTCGATACCGCCCGTATGCATCACCCCCTATTCTGCTTGACACTCTG
GAGTATAATTTTGTAACCTCAAGCTTGTAATTTCGCTTTTTATTGAGCCT
ACACTACACAACAACCCGGAAAACACAACCCACGGTGGAAACCCAACCAG
GAATGGCTCACGAGCGGTTTCGTCACAGCGCTTTGGAAGAATTCCCAGAC
TGTAAGGAGCTCAGCCAGCAGAAAACATTTTAGTTACAAATATGTGGCAG
GAGCAGCACGGTCTCGGCGTCTATCATAGAGTTGATGATTTCCACTGATG
ATTTCTCCAATGTATTCCGCGACGCACTACAACACCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCACCCACCCACCACGCCCCCCCCCCCCCACCAA
CCGGCCGGCGGGCGAAAAACNNNNNNNNNNGGTCTCGGCGTCTCTCAAAG
AGTTGATTATTTCCACTGATGATTTCTCCAAAGTATTCCGCGACCCCCCA
AAACCCCCCCCCCCCCCCCCCCTCCCCTCGCGGCGAAAACACGAATCGTC
AGGGTCCAGCTCAACAGTGGAAGGTGGACGGACGAAGAGCACCAAGGATT
TCTCCGCGGTCTTGAGGTATACGGTCATGGCAACTGGAACGCTATCGCGG
TCTTCGTTCCCTCTCGCAGCCCGCCCCAGATCGAAGCCTACGCCCAACTG
TACTTTGCGCAGGGTGAAGCGGCCCGAAACTTCCAGCAGGTACGTACATC
CATAGGCGCACGCGTGGTGTGAGCCACGAGCGCTTTGGTGTTTATGGCGT
TGGAGAACGTAGGTTCTGTCAATTCGTTGGGACAAATAGCTCGTTTTTTT
CCCTCTTTCCTGCCCTCGATTTTATTGCTCTCGTCTGTTTCGTTGCTCCA
CCGTTGTAAGGGGAAGTGTGTCGGGCTCATGCTCTCTTTGTTCTCGTCTA
TTGTCTCGGCCGTTCCGTGCGTGTGCCGATACCCGAGTTGGTTTCTCTCG
GGCCTGTGCTCACGCGGAAGCGAATGTGTATTCGAATTGCAATGCATGGC
TGCTAGTGCTCGTAACTGTGACGCTGCCTGGAAACCCTTTCCTCGCCCAA
CCGATGGGGATCGAATTCGGTTGGTGGGCAGTTGGTGTGCACCCAACAAC
GAGAAGCAACAACATACCTTTACAAAGGTTCGTGCCAGCACATATTCATC
CTGATCATACATAAATCCTAAATTCGATATCCTACATTATCGCGACGGAT
TTACCAGGTGGGTAGGTGCTCAACGGAGAAAGTGAAGCACGACCTAGGCG
ACACTTCACAGGTGTTGGGGGCCCGGGATGCTACTTGTGCGGCCACGCCA
TGGATCTCACTCTCTCCATCTCTCATCAACGGTCCCGATGCCTTCACACC
ACAGTCACCGTGTAGTCATCCTCAATTCCTCTCACATGATCCCCTACAGA
CACTCTTGCCATGCCGTTAGACTCACCCCCCAGCCCCACATGCTTACATG
AACTATTTTCCGAATAAAGCAGGAAGTTCGCGGAGTGCCGCAGCAGCAAC
AGCCCCCGCCGCAGCAACAGTATCAGCAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17650:483..3512+

>mRNA_Ecto-sp13_S_contig17650.5339.1 ID=mRNA_Ecto-sp13_S_contig17650.5339.1|Name=mRNA_Ecto-sp13_S_contig17650.5339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17650:483..3512+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGACTTCTTCGAGAGATAGAAGGGTCCAGCTCAACAGTGGAAGGTGGAC
GGACGAAGAGCACCAAGGATTTCTCCGCGGTCTTGAGGTATACGGTCATG
GCAACTGGAACGCTATCGCGGTCTTCGTTCCCTCTCGCAGCCCGCCCCAG
ATCGAAGCCTACGCCCAACTGTACTTTGCGCAGGGTGAAGCGGCCCGAAA
CTTCCAGCAGGAAGTTCGCGGAGTGCCGCAGCAGCAACAGCCCCCGCCGC
AGCAACAGTATCAGCAG
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