mRNA_Ecto-sp13_S_contig1765.5338.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1765.5338.1 vs. uniprot
Match: D7FJE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE2_ECTSI) HSP 1 Score: 2073 bits (5371), Expect = 0.000e+0 Identity = 1158/1277 (90.68%), Postives = 1179/1277 (92.33%), Query Frame = 2
Query: 563 IDATEEEKEAGLVLTELFTLGVEDDVVSDSEDDHSDRALAESTTATEAQEPRIEEQGKDNHEQEAQARSSARDMEGGQTTTNNSRRSQSPTTQAMETHCRMMMNGIASSVDVASGLLQESAGEVLRCLVLDVQETERAVAEQLQSVQPELSGEACTWLKQQAASGLDRGELQAFELRLAGVDTQCLAFVAKAFQDQRAAIGRRMKETIDEMVSAFDRHLEDSAASTKQHFRWMKRRYREKIDINRAASRIELKDTILLDKCILEDKTKEIRDQYKEEVGRLRVEFQLERSTLRKHCRELEQSIEVLRLEKMQAEEDALQAHRYIEALEDGAPNHSEDGSVRSHKHSPRGGRSPRGGGHSRHASRNGSAQNSRHPSYHMLQRQESFNPGTSPSRHAFLSAGNGASGSPRSPRHMLAAGGHAGGRLSPRGSSKGGASILPDCQTGRGVGVGATQEAAVSPRGAGSAQNTGXXXXXXXXXXRMASGQNTGRNAFFIACEGNGGNNSSRQLINPTARHEEARQRFENDVASKLMQVIEKKKLANLEEELADEIKNREAANARLTMMEQVIPKLHEDLKNVQAQLVQSRMETNELRKINTVITTDLAQAASSEGQVRIRDAVAVREAETTLRDHPIGNAAAVAGGARLFRHAAGTVVGAIRFSTRQLAGAGGGPRAGPAQQQDTVALRKAKEMGQWVVQNPPEXXXXXXXXXXXXXXX-SAEDRELVSKLKRQISTLEDERRSPAAGAARLRSDMDDFRNDDGGKECAHTSGGIPNAGEETLADRRFASIRLEVDNLKEVRRDLESKIAKMQVESDENTFLRRRLEAIERTTLKLNIGGVSNDLQILRERLELEAAEVSRLRGTVAALQNDKVMMTEEKASLEYDIQRLAQFKAEFENLADISINDSESNGLNGDSGTTGGVVDRGDGGKWKQRAKKLQQYVKWQLAEADTQAQRDRAQMALKSRSHEILMAEMAVLVKRYRRERSRLYEVNRTLLQQLAELDAQRDHDPRRRNVRTAGPPGVAANGRPTNPKCGRGKAREWATTGDGGLRHHQGAKVVTDTTTLSSVALVSTHTIENTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXERAAGARNGGENDFSHARPRTSTGCEIRARNRIGADLVAKKRGDRRGRKEKASLKMEVETLARQLRSGVREEFFGPVSQSARERAKDMSAATKRHTTRDPMILAKPLSAITGSVLTNVPLPARMATVVGEMEPSYNQGRTSMSWSRPTRCEENASAGRCGDGHGHHRGDTGALW 4390
IDATEEEKEAGLVLTELFTLGVEDDVVSDSEDDHSDRALA STTATEAQ PRIEEQGKDNHEQEAQARSSAR MEGGQTTT NSRRSQSPTTQAMETHCRMMMNGIASSVDVASGLLQESAGEVLRCLVLDVQ+TER VAEQLQSVQPELSGEACTWLKQQAA GLDRG+ QAFELRLAG+DTQCLA VAKAFQDQRAAI RRMKETIDEMVSAFDRHLEDSAASTKQ+FRWMKRRYREKIDINRAASRIELKDTILLDKCILEDKTKEIRDQYKEEVGRLRVEFQLERSTLRK CRELEQS+EVLRLEKMQAEEDALQAHRYIEALEDGAPNHSEDGSVRSHKHSPRGGRSPRGGGHSRHASRNGSAQNSRHPS+HMLQRQES NPGTSPSRHAFLSAGNGASGSPRSPRHMLAAGGHAGGRLSPRG+SKGGAS LPDCQTGRGVGVGATQEAAVSPRGAGSA NTG XXXXXXXXXRMASGQNTGRNA F+ACE NGGNNSSRQLINPTARHEEARQRFENDVASKLMQVIEKKKLANLEEELADEIKNREAANARL MMEQVIPKLHEDLKNVQAQLVQSRMETNELRKINTV+TTDLAQAASSEGQVRIRDA AVREAETTLRDHPIGNAAAVAGGA FRHAAG VVGAIRFSTRQLAGAG PRAGPAQQQDTVALRKAKEMGQWVVQNPPE SAEDRELVSKLKRQIS LEDERR+P AGAA LRSDMDDFRNDDGGKE A+TSGG PNAGEETLADRRFASI+ EV+NLKEVRRDLESKIAKMQVESDEN+FLRRRLEAIERTTLKLNIGGVSNDLQILRERLELEAAEVSRLRGTVAALQNDKVMMTEEKASLEYDIQRLAQFKAEFENLADISINDSESNGLNGDSGT GG VD GDGGKWKQRAKKLQQY+KWQLAEA+TQAQRDRAQMALKSRSHEILMAEMAVLVKRYRRER RLYEVNRTLLQQLAELDAQ DHDPRRR V TAGPPGV ANG+PTNPK GRGKAREWA TG GGLRHHQGAKVVTDTTTLSSVALV THTIENT A ER AGARNGGENDFS ARPRTSTGCE RARNRIG DLVAKKR DRRGRKEKASLK EVETLARQLRSGVREEFFGP+SQSARERAKDMSAATKRHTTRDPMILAKPLSAITGSVLTNVPLPAR+ATV GEMEPSYNQGRTS SWSRPTRCE+NASAG GDG+GHHRG GA W
Sbjct: 42 IDATEEEKEAGLVLTELFTLGVEDDVVSDSEDDHSDRALAASTTATEAQGPRIEEQGKDNHEQEAQARSSARGMEGGQTTTTNSRRSQSPTTQAMETHCRMMMNGIASSVDVASGLLQESAGEVLRCLVLDVQDTERTVAEQLQSVQPELSGEACTWLKQQAARGLDRGQSQAFELRLAGIDTQCLASVAKAFQDQRAAIERRMKETIDEMVSAFDRHLEDSAASTKQNFRWMKRRYREKIDINRAASRIELKDTILLDKCILEDKTKEIRDQYKEEVGRLRVEFQLERSTLRKQCRELEQSVEVLRLEKMQAEEDALQAHRYIEALEDGAPNHSEDGSVRSHKHSPRGGRSPRGGGHSRHASRNGSAQNSRHPSHHMLQRQESLNPGTSPSRHAFLSAGNGASGSPRSPRHMLAAGGHAGGRLSPRGASKGGASTLPDCQTGRGVGVGATQEAAVSPRGAGSAHNTGRXXXXXXXXXRMASGQNTGRNA-FLACEDNGGNNSSRQLINPTARHEEARQRFENDVASKLMQVIEKKKLANLEEELADEIKNREAANARLAMMEQVIPKLHEDLKNVQAQLVQSRMETNELRKINTVMTTDLAQAASSEGQVRIRDAAAVREAETTLRDHPIGNAAAVAGGAPSFRHAAGAVVGAIRFSTRQLAGAGREPRAGPAQQQDTVALRKAKEMGQWVVQNPPEEHQEGEQEEYPVDDNDSAEDRELVSKLKRQISALEDERRAPVAGAAGLRSDMDDFRNDDGGKERAYTSGGTPNAGEETLADRRFASIKFEVENLKEVRRDLESKIAKMQVESDENSFLRRRLEAIERTTLKLNIGGVSNDLQILRERLELEAAEVSRLRGTVAALQNDKVMMTEEKASLEYDIQRLAQFKAEFENLADISINDSESNGLNGDSGTAGGAVDCGDGGKWKQRAKKLQQYIKWQLAEAETQAQRDRAQMALKSRSHEILMAEMAVLVKRYRRERGRLYEVNRTLLQQLAELDAQSDHDPRRRKVHTAGPPGVTANGQPTNPKYGRGKAREWAITGGGGLRHHQGAKVVTDTTTLSSVALVPTHTIENTPAVVAAVASARRKGPAMSASAAALLTAGEERVAGARNGGENDFSRARPRTSTGCESRARNRIGVDLVAKKRCDRRGRKEKASLKKEVETLARQLRSGVREEFFGPLSQSARERAKDMSAATKRHTTRDPMILAKPLSAITGSVLTNVPLPARVATVGGEMEPSYNQGRTSRSWSRPTRCEQNASAGGYGDGYGHHRGGAGAFW 1317
BLAST of mRNA_Ecto-sp13_S_contig1765.5338.1 vs. uniprot
Match: A0A6H5L653_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L653_9PHAE) HSP 1 Score: 1734 bits (4492), Expect = 0.000e+0 Identity = 1029/1298 (79.28%), Postives = 1050/1298 (80.89%), Query Frame = 2
Query: 782 MEGGQTTTNNSRRSQSPTTQAMETHCRMMMNGIASSVDVASGLLQESAGEVLRCLVLDVQETERAVAEQLQSVQPELSGEACTWLKQQAASGLDRGELQAFELRLAGVDTQCLAFVAKAFQDQRAAIGRRMKETIDEMVSAFDRHLEDSAASTKQHFRWMKRRYREKIDINRAASRIELKDTILLDKCILEDKTKEIRDQYKEEVGRLRVEFQLERSTLRKHCRELEQSIEVLRLEKMQAEEDALQAHRYIEALEDGAPNHSEDGSVRSHKHSPRGGRSPRGGGHSRHASRNGSAQNSRHPSYHMLQRQESFNPGTSPSRHAFLSAGNGASGSPRSPRHMLAAGGHAGGRLSPRGSSKGGASILPDCQTGRGVGVGATQEAAVSPRGAGSAQNTGXXXXXXXXXXRMASGQNTGRNAFFIACEGNGGNNSSRQLINPTARHEEARQRFENDVASKLMQVIEKKKLANLEEELADEIKNREAANARLTMMEQVIPKLHEDLKNVQAQLVQSRMETNELRKINTVITTDLAQAASSEGQVRIRDAVAVREAETTLRDHPIGNAAAVAGGARLFRHAAGTVVGAIRFSTRQLAGAGGGPRAGPAQQQDTVALRKAKEMGQWVVQNPPEXXXXXXXXXXXXXXXSAEDRELVSKLKRQISTLEDERRSPAAGAARLRSDMDDFRNDDGGKECAHTSGGIPNAGEETLADRRFASIRLEVDNLKEVRRDLESKIAKMQVESDENTFLRRRLEAIERTTLKLNIGGVSNDLQILRERLELEAAEVSRLRGTVAALQNDKVMMTE-----------------------------------EKASLEYDIQRLAQFKAEFENLADISINDSESNGLNGDSGTTGGVVDRGDGGKWKQRAKKLQQYVKWQLAEADTQAQRDRAQMALKSRSHEILMAEMAVLVKRYRRERSRLYEVNRTLLQQLAELDAQ------------------------------------------------------------RDHDPRRRNVRTAGPPGVAANGRPTNPKCGRGKAREWATTGDGGLRHHQGAKVVTDTTTLSSVALVSTHTIENTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXERAAGARNGGENDFSHARPRTSTGCEIRARNRIGADLVAKKRGDRRGRKEKASLKMEVETLARQLRSGVREEFFGPVSQSARERAKDMSAATKRHTTRDPMILAKPLSAITGSVLTNVPLPARMATVVGEMEPSYNQGRTSMSWSRPTRCEENASAGRCGDGHGHHRGDTGALW 4390
MEGGQTTT NSRRSQSPTTQAMETHCRMMMNGIASSVDVASGLLQESAGEVLRCLVLDVQ+TERAVAEQLQ VQPELSGEACTWLKQQAASGLDRG+LQAFELRLAG+DTQCLA VAKAFQDQRA I RRMKETIDEMVSAFDRHLEDSAASTKQHFRWMKRRYREKIDINRAASRIELK VG E + C EL Q ALEDGAPNHSEDGSVRSHKHSPRGGRSPRGGGHSRHASRNGSAQNSRHPSYHMLQRQESFNPGTS SRHAFLSAGNG SGSPRSPRHMLAAGGHAGGRLSPRG+SKGGAS LPDCQTGRGVGVGATQEAAVSPRGAGSA NTG RMASGQNTGRNA F ACEGNGGNNSSRQLINPT RHEEARQRFENDVASKLMQVIEKKKLANLEEELADEIKNREAANARL MMEQVIPKLHEDLKNVQAQLVQSRMETNELRKINTV+TTDLAQAASSEGQVRIRDA AVREAETTLRDHPI NAAAVAGGARLFRH A TVVGAIRFSTRQ+AG GGP AGPA QQDTVALRKAKEMGQWVVQNPPE SAEDRELVSKLKRQIS LEDERR P AGA LRSDMDDFRNDDGGKE A+TSGG PNA EETLADRRFASIRLEV+NLKEVRRDLESKIAKMQVESDEN FLRRRLEAIERTTLKLNIGGVSNDLQILRERLELEAAEVSRLRGTVAALQNDKVM+TE EKASLEYDIQRLAQFKAEFENLADISINDSESNGL+GDSGT GG D GDGGKWKQRAKKLQQYVKWQLAEA+TQAQRDRAQMALKSRSHEILMAEMAVLVKRYRRERSRLYEVNRTLLQQLAELDAQ RD +PRR NVRTAGP GVAANG+PTNPK GRGKAREWA TG GGLRHHQGAKVVT TTTLSSVALV THTIENT A XXXXXXXXXXXXXXXXXXXX +R AGARNGGE+DFS ARPRTS GCE RARN+IGADLVAK+RGDRRGRKEKASLK EVETLARQLRSGVREEFFGP+SQSARERAKDMSAATKRHTTRDPMILAKPLSAITGSVLTNVPLPA+MATVV EMEPSY QGRTS S SRPTRCEENASAG GDG+GHHRG GA W
Sbjct: 1 MEGGQTTTTNSRRSQSPTTQAMETHCRMMMNGIASSVDVASGLLQESAGEVLRCLVLDVQDTERAVAEQLQRVQPELSGEACTWLKQQAASGLDRGQLQAFELRLAGIDTQCLASVAKAFQDQRATIERRMKETIDEMVSAFDRHLEDSAASTKQHFRWMKRRYREKIDINRAASRIELK------------------------VGGQPGENPV-------CCPELSQ------------------------ALEDGAPNHSEDGSVRSHKHSPRGGRSPRGGGHSRHASRNGSAQNSRHPSYHMLQRQESFNPGTSSSRHAFLSAGNGVSGSPRSPRHMLAAGGHAGGRLSPRGASKGGASTLPDCQTGRGVGVGATQEAAVSPRGAGSAHNTGCGIGSRQNTGRMASGQNTGRNA-FTACEGNGGNNSSRQLINPTLRHEEARQRFENDVASKLMQVIEKKKLANLEEELADEIKNREAANARLAMMEQVIPKLHEDLKNVQAQLVQSRMETNELRKINTVMTTDLAQAASSEGQVRIRDAAAVREAETTLRDHPIENAAAVAGGARLFRHTASTVVGAIRFSTRQIAGTRGGPGAGPAYQQDTVALRKAKEMGQWVVQNPPEEHQAEYPVDDND---SAEDRELVSKLKRQISALEDERRVPVAGAGELRSDMDDFRNDDGGKERAYTSGGTPNAEEETLADRRFASIRLEVENLKEVRRDLESKIAKMQVESDENNFLRRRLEAIERTTLKLNIGGVSNDLQILRERLELEAAEVSRLRGTVAALQNDKVMITEAAAKAQDESVPLVQVEAERVSFERKIAGLERQHQQEKASLEYDIQRLAQFKAEFENLADISINDSESNGLDGDSGTAGGAADCGDGGKWKQRAKKLQQYVKWQLAEAETQAQRDRAQMALKSRSHEILMAEMAVLVKRYRRERSRLYEVNRTLLQQLAELDAQNTPFTGCFNPLPPYLRPLYSALFHPSRIPYLLVHICIHSAAAAVXXXXXXXXXXXXXXXXRDDEPRRGNVRTAGPLGVAANGQPTNPKYGRGKAREWANTGGGGLRHHQGAKVVTATTTLSSVALVPTHTIENTPAVAXXXXXXXXXXXXXXXXXXXXLTAGGQRVAGARNGGEHDFSRARPRTSAGCENRARNKIGADLVAKERGDRRGRKEKASLKKEVETLARQLRSGVREEFFGPLSQSARERAKDMSAATKRHTTRDPMILAKPLSAITGSVLTNVPLPAKMATVVREMEPSYTQGRTSRSRSRPTRCEENASAGGFGDGYGHHRGGAGAFW 1239 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1765.5338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1765.5338.1 >prot_Ecto-sp13_S_contig1765.5338.1 ID=prot_Ecto-sp13_S_contig1765.5338.1|Name=mRNA_Ecto-sp13_S_contig1765.5338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1281bp MYLQIDATEEEKEAGLVLTELFTLGVEDDVVSDSEDDHSDRALAESTTATback to top mRNA from alignment at Ecto-sp13_S_contig1765:1752..14199+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1765.5338.1 ID=mRNA_Ecto-sp13_S_contig1765.5338.1|Name=mRNA_Ecto-sp13_S_contig1765.5338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=12448bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1765:1752..14199+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1765:1752..14199+ >mRNA_Ecto-sp13_S_contig1765.5338.1 ID=mRNA_Ecto-sp13_S_contig1765.5338.1|Name=mRNA_Ecto-sp13_S_contig1765.5338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1765:1752..14199+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |