mRNA_Ecto-sp13_S_contig17647.5337.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17647.5337.1
Unique NamemRNA_Ecto-sp13_S_contig17647.5337.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17647.5337.1 vs. uniprot
Match: A0A6H5L5I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I0_9PHAE)

HSP 1 Score: 313 bits (803), Expect = 2.690e-106
Identity = 164/173 (94.80%), Postives = 169/173 (97.69%), Query Frame = 1 
Query:    4 RKEVASELAHNRPQTLDYPFTNQLEAWKEDARVRSSARQGNRNDSANDNSAVRLKSLLQGETLSYGGVSDSGDTDAEGTRNGSHTQEQPPQPEVWKGRAWNSGTILVRPGGEDRPSGRVPRTTYIYLVGTSARVRGLEVEVLIGEPGXXXXXXRRTILSRATGVMRACVPERE 522
            RKEVASEL HNRPQ+LDYPFTNQLEAWKEDARVRSSARQGNRNDS ND SAVRLKSLLQGETLSYGGVSDSGDTDAEGTR GSHTQEQPPQPEVWKGRAWNSGT+LVRPGGEDRPSGRVPRTTYIYLVGT+ARVRGLEVEVL+GEPGXXXXXXRRTILSRATGVMRACVPER+
Sbjct:    9 RKEVASELKHNRPQSLDYPFTNQLEAWKEDARVRSSARQGNRNDSENDKSAVRLKSLLQGETLSYGGVSDSGDTDAEGTRKGSHTQEQPPQPEVWKGRAWNSGTLLVRPGGEDRPSGRVPRTTYIYLVGTAARVRGLEVEVLVGEPGXXXXXXRRTILSRATGVMRACVPERK 181
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BLAST of mRNA_Ecto-sp13_S_contig17647.5337.1 vs. uniprot
Match: D8LR32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR32_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 2.330e-104
Identity = 160/174 (91.95%), Postives = 168/174 (96.55%), Query Frame = 1 
Query:    1 ERKEVASELAHNRPQTLDYPFTNQLEAWKEDARVRSSARQGNRNDSANDNSAVRLKSLLQGETLSYGGVSDSGDTDAEGTRNGSHTQEQPPQPEVWKGRAWNSGTILVRPGGEDRPSGRVPRTTYIYLVGTSARVRGLEVEVLIGEPGXXXXXXRRTILSRATGVMRACVPERE 522
            ERKEVASEL HNRPQTLDYPFTNQLEAWKE+ARVRSSARQGN+ND+AN+ SAVRLKSLLQGE LSYGGVSD+GDTDAEGTRNGSHTQEQPPQPEVWKGRAWNSGT+LVRPGGEDRPSGRVPRTTYIYLVGT+ARVRGLEVEVL+GEPG XXXX RRTILSRATGVM ACVPERE
Sbjct:   14 ERKEVASELEHNRPQTLDYPFTNQLEAWKENARVRSSARQGNKNDTANNKSAVRLKSLLQGEALSYGGVSDNGDTDAEGTRNGSHTQEQPPQPEVWKGRAWNSGTLLVRPGGEDRPSGRVPRTTYIYLVGTAARVRGLEVEVLVGEPGGXXXX-RRTILSRATGVMCACVPERE 186
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17647.5337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5I0_9PHAE2.690e-10694.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LR32_ECTSI2.330e-10491.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17647contigEcto-sp13_S_contig17647:689..2234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size522
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_004550.1
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462916.9909873-CDS-Ecto-sp13_S_contig17647:688..10721681462916.9909873-CDS-Ecto-sp13_S_contig17647:688..1072Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17647 689..1072 -
1681462917.002956-CDS-Ecto-sp13_S_contig17647:2096..22341681462917.002956-CDS-Ecto-sp13_S_contig17647:2096..2234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17647 2097..2234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17647.5337.1prot_Ecto-sp13_S_contig17647.5337.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17647 689..2234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17647.5337.1

>prot_Ecto-sp13_S_contig17647.5337.1 ID=prot_Ecto-sp13_S_contig17647.5337.1|Name=mRNA_Ecto-sp13_S_contig17647.5337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp
ERKEVASELAHNRPQTLDYPFTNQLEAWKEDARVRSSARQGNRNDSANDN
SAVRLKSLLQGETLSYGGVSDSGDTDAEGTRNGSHTQEQPPQPEVWKGRA
WNSGTILVRPGGEDRPSGRVPRTTYIYLVGTSARVRGLEVEVLIGEPGGG
GGGGRRTILSRATGVMRACVPERE
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mRNA from alignment at Ecto-sp13_S_contig17647:689..2234-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17647.5337.1 ID=mRNA_Ecto-sp13_S_contig17647.5337.1|Name=mRNA_Ecto-sp13_S_contig17647.5337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17647:689..2234- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCGGAAAGAGGTTGCGTCGGAGCTGGCACACAACCGCCCGCAAACACT
GGACTACCCTTTCACCAACCAGCTTGAGGCCTGGAAGGAAGACGCACGCG
TACGATCCTCCGCCCGGCAGGGTAACAGGAACGATTCGGTGAGATATGTG
TTTGTCGTTTTTGTAAGGCCTACTTCCTGGCTTAATTTTATGTGCGGTGT
CTTCGTAACTGCTGTAATGTGTTGCTCCCAAGGGCGCTTCTCCTGGGACG
CGCCGTGTAGCGCCGTCGCAAGCTGTTGTAAAGAGGGGTTCGTGCTTCAT
AGGGGAGGGTCATGAATGGCGCGCGACATATCAAATGTACTGGTGCACCA
GACTAGATATCTCTGTCTCTGTCTCTCGCACACACACAACACGATGTTTT
CAAACACCATGGACTACTGATCGACCACTCCCACCACAGGTAATTGATTT
AGTAGAAGATCTGGTGAAAACGATAACGATGGTTATGGGGCATTATTTTC
GAAGTGATAGAGAAAGAAAGGGATAGGGGAGAAAGGAGGATTAAGACGAT
GATGGAGGAGGAAAACATGGCGTGGAAGAGATCAAACATTTTGAGCCCGA
TGACATTCCTCACAACAAACACCGCAGGGCGAGAGAGAACCTGCCAAAAA
CCAGTGGGAATATTGGCGACGAGAGTGGTGGTAGTATTTGCAGGGACGAC
GATGAAGAAAGAAATCCGTAACGAACGCGCGTCCAAAGCAGTCGTGGTGA
ACACGTACAGTTGCCGTCTGTTGTTTCTACGGTGTCTATCTTTATCCGGA
GAAAGCGTAGACCCCCTCATGATGCTCCCTTAAATGGTTCCAGATCGTGG
TCTTTTGAAGCATTTGTGTTTTCGGCCACACTGAGATTGACGTGTTTTCA
TTGGTCAGCCGGTTAGCGCGGTCGATGCTAACGAAGAAAACACGCACACA
CAGTCCTCTAGCGTGGTTACCGTACTTTGAAGAGACTGGCATCCACCCGA
AGACCCTGCCGGTACATTGACGTTTTGAAGGCGAAAATTGAGACACGCGC
GTTTCTCCCGTCACTTTCCGTACGCCCCGCTAGATCCCTCTCAGCCGAGG
CCGTCCCCTACCAAAATCCCTCCGGTAACACCCTTTCCCCGCCGCCGCTG
TCAACAAAAAAGGCAAACGACAACTCGGCAGTTCGCCTCAAGAGCCTCCT
CCAGGGGGAAACCCTGAGCTACGGGGGCGTCAGCGACAGCGGCGACACCG
ACGCCGAGGGCACCCGCAACGGCAGCCACACCCAGGAACAGCCGCCGCAG
CCGGAGGTGTGGAAAGGCAGGGCTTGGAACTCGGGCACCATCCTGGTCCG
CCCCGGCGGCGAAGACAGGCCGTCGGGAAGGGTGCCGCGGACGACGTACA
TCTACCTCGTGGGGACCTCGGCGAGGGTGCGCGGGCTCGAGGTTGAGGTG
CTCATCGGTGAGCCCGGCGGCGGCGGTGGCGGCGGGCGGCGCACGATCCT
GTCGAGGGCCACCGGAGTGATGCGCGCCTGCGTGCCCGAGCGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17647:689..2234-

>mRNA_Ecto-sp13_S_contig17647.5337.1 ID=mRNA_Ecto-sp13_S_contig17647.5337.1|Name=mRNA_Ecto-sp13_S_contig17647.5337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17647:689..2234- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCGGAAAGAGGTTGCGTCGGAGCTGGCACACAACCGCCCGCAAACACT
GGACTACCCTTTCACCAACCAGCTTGAGGCCTGGAAGGAAGACGCACGCG
TACGATCCTCCGCCCGGCAGGGTAACAGGAACGATTCGGCAAACGACAAC
TCGGCAGTTCGCCTCAAGAGCCTCCTCCAGGGGGAAACCCTGAGCTACGG
GGGCGTCAGCGACAGCGGCGACACCGACGCCGAGGGCACCCGCAACGGCA
GCCACACCCAGGAACAGCCGCCGCAGCCGGAGGTGTGGAAAGGCAGGGCT
TGGAACTCGGGCACCATCCTGGTCCGCCCCGGCGGCGAAGACAGGCCGTC
GGGAAGGGTGCCGCGGACGACGTACATCTACCTCGTGGGGACCTCGGCGA
GGGTGCGCGGGCTCGAGGTTGAGGTGCTCATCGGTGAGCCCGGCGGCGGC
GGTGGCGGCGGGCGGCGCACGATCCTGTCGAGGGCCACCGGAGTGATGCG
CGCCTGCGTGCCCGAGCGGGAG
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