mRNA_Ecto-sp13_S_contig17644.5336.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17644.5336.1 vs. uniprot
Match: D8LSV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV7_ECTSI) HSP 1 Score: 290 bits (741), Expect = 2.080e-98 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1
Query: 1 LTNARIQREFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPFFVDRICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCVK 420
LTNARIQREFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPFFVDRICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCVK
Sbjct: 60 LTNARIQREFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPFFVDRICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCVK 199
BLAST of mRNA_Ecto-sp13_S_contig17644.5336.1 vs. uniprot
Match: A0A6H5L0Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z0_9PHAE) HSP 1 Score: 286 bits (733), Expect = 4.560e-94 Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 1
Query: 1 LTNARIQREFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPFFVDRICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCVK 420
LTNARIQREFNPTFGVLQELDKQGLLGAPANFY DRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPFFVDRICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCVK
Sbjct: 282 LTNARIQREFNPTFGVLQELDKQGLLGAPANFYADRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPFFVDRICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCVK 421
BLAST of mRNA_Ecto-sp13_S_contig17644.5336.1 vs. uniprot
Match: D7FSJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ7_ECTSI) HSP 1 Score: 133 bits (334), Expect = 6.020e-35 Identity = 70/148 (47.30%), Postives = 95/148 (64.19%), Query Frame = 1
Query: 1 LTNARIQREFNPTFGVLQELDKQGLLGAPANF---YPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCA-RGGPFFVDR------ICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCC 414
+TN +R NPTF V++EL QG+LG Y R L+ DL+ MLCA+ + +A S++T LL+ HSRAK FFLP C + G + R ICL RP+VEVYGIEW+TT N Y+VY++W + +LEMI SD++K +Q CC
Sbjct: 208 ITNGEHERLLNPTFRVIEELISQGILGTNGTIVETYKKRSLWEDLQAMLCADALSVAHSTLTNLLLAHSRAKMFFLPWGCEPQIGDMMIPRFVSASMICLQRPEVEVYGIEWRTTSNAYTVYNKW-DPSVNQLEMIVSDDLKGVQHCC 354
BLAST of mRNA_Ecto-sp13_S_contig17644.5336.1 vs. uniprot
Match: D7FHC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC1_ECTSI) HSP 1 Score: 134 bits (337), Expect = 3.650e-34 Identity = 65/139 (46.76%), Postives = 95/139 (68.35%), Query Frame = 1
Query: 22 REFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPF------FVDR--ICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCC 414
++ NPT+ V+ EL++QG LG + DR + DL+ MLCA+N+ L+ S+++ LL+ HSRAKRFFLP C P+ FV+ ICL RP+V+VYGI+W+TT + Y+VYD W + ++ +EM+ SD VK +QRCC
Sbjct: 423 KQLNPTYSVIAELNRQGYLGTNVGMHKDRSFWVDLQTMLCADNLALSHSTLSNLLLAHSRAKRFFLPWGC-EPQPWTLKLNRFVNASMICLQRPEVQVYGIDWRTTKDAYTVYDSW-DPNSNMMEMVVSDAVKGVQRCC 559
BLAST of mRNA_Ecto-sp13_S_contig17644.5336.1 vs. uniprot
Match: A0A6H5L7B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7B0_9PHAE) HSP 1 Score: 126 bits (316), Expect = 8.430e-32 Identity = 64/136 (47.06%), Postives = 88/136 (64.71%), Query Frame = 1
Query: 28 FNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCA-RGGPFFVDR------ICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCC 414
NP + V++ ++ QGLLG + DR L+ DL+ MLCA+++ L+ S+ T LL+ HSRAKRFFLP C + G ++ ICL R +VEVYGIEW+TT Y+VYD W + + LEM+ SD VK +QRCC
Sbjct: 292 LNPAYRVIEGINSQGLLGTNVEMHKDRPLWEDLQAMLCADSLALSHSTFTNLLLAHSRAKRFFLPWGCEPQVGDTTLNHFANATMICLQRSEVEVYGIEWRTTSEAYTVYDSW-DPSSNLLEMVVSDSVKGMQRCC 426
BLAST of mRNA_Ecto-sp13_S_contig17644.5336.1 vs. uniprot
Match: A0A6H5JNM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM4_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.290e-31 Identity = 64/139 (46.04%), Postives = 93/139 (66.91%), Query Frame = 1
Query: 22 REFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPF------FVDR--ICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCC 414
++ NPT+ V+ EL++QG LG + DR + DL+ MLCA+++ L+ S+++ LL+ HSRAKRFFLP C P+ FV+ ICL RP EVYGI+W+TT + Y+VYD W + ++ +EM+ SD VK +QRCC
Sbjct: 298 KQLNPTYSVIAELNRQGFLGTNVEMHKDRSFWEDLQAMLCADSLALSHSTLSNLLLAHSRAKRFFLPWGC-EPQPWTLKLNRFVNASMICLQRP--EVYGIDWRTTSDAYTVYDSW-DPNSNMMEMVVSDAVKGVQRCC 432
BLAST of mRNA_Ecto-sp13_S_contig17644.5336.1 vs. uniprot
Match: A0A836CFK5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFK5_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 1.700e-6 Identity = 37/96 (38.54%), Postives = 48/96 (50.00%), Query Frame = 1
Query: 109 DLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARG---GPFFVDRICLYRPDVEVY--GIEWKTTLNEYSVYDEWINTDAQRLEMIT 381
D D+R +LCA N+V A+SS+ LL+ H++ R T G + + RPDV Y G EW YS Y W NT QRLEM+T
Sbjct: 55 DFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGEWA---GNYSPYSSWQNTYEQRLEMLT 147 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17644.5336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17644.5336.1 >prot_Ecto-sp13_S_contig17644.5336.1 ID=prot_Ecto-sp13_S_contig17644.5336.1|Name=mRNA_Ecto-sp13_S_contig17644.5336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp LTNARIQREFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENback to top mRNA from alignment at Ecto-sp13_S_contig17644:2527..3641- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17644.5336.1 ID=mRNA_Ecto-sp13_S_contig17644.5336.1|Name=mRNA_Ecto-sp13_S_contig17644.5336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1115bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17644:2527..3641- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17644:2527..3641- >mRNA_Ecto-sp13_S_contig17644.5336.1 ID=mRNA_Ecto-sp13_S_contig17644.5336.1|Name=mRNA_Ecto-sp13_S_contig17644.5336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17644:2527..3641- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |