mRNA_Ecto-sp13_S_contig17644.5336.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17644.5336.1
Unique NamemRNA_Ecto-sp13_S_contig17644.5336.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17644.5336.1 vs. uniprot
Match: D8LSV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV7_ECTSI)

HSP 1 Score: 290 bits (741), Expect = 2.080e-98
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1
Query:    1 LTNARIQREFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPFFVDRICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCVK 420
            LTNARIQREFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPFFVDRICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCVK
Sbjct:   60 LTNARIQREFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPFFVDRICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCVK 199          
BLAST of mRNA_Ecto-sp13_S_contig17644.5336.1 vs. uniprot
Match: A0A6H5L0Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z0_9PHAE)

HSP 1 Score: 286 bits (733), Expect = 4.560e-94
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 1
Query:    1 LTNARIQREFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPFFVDRICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCVK 420
            LTNARIQREFNPTFGVLQELDKQGLLGAPANFY DRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPFFVDRICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCVK
Sbjct:  282 LTNARIQREFNPTFGVLQELDKQGLLGAPANFYADRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPFFVDRICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCVK 421          
BLAST of mRNA_Ecto-sp13_S_contig17644.5336.1 vs. uniprot
Match: D7FSJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ7_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 6.020e-35
Identity = 70/148 (47.30%), Postives = 95/148 (64.19%), Query Frame = 1
Query:    1 LTNARIQREFNPTFGVLQELDKQGLLGAPANF---YPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCA-RGGPFFVDR------ICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCC 414
            +TN   +R  NPTF V++EL  QG+LG        Y  R L+ DL+ MLCA+ + +A S++T LL+ HSRAK FFLP  C  + G   + R      ICL RP+VEVYGIEW+TT N Y+VY++W +    +LEMI SD++K +Q CC
Sbjct:  208 ITNGEHERLLNPTFRVIEELISQGILGTNGTIVETYKKRSLWEDLQAMLCADALSVAHSTLTNLLLAHSRAKMFFLPWGCEPQIGDMMIPRFVSASMICLQRPEVEVYGIEWRTTSNAYTVYNKW-DPSVNQLEMIVSDDLKGVQHCC 354          
BLAST of mRNA_Ecto-sp13_S_contig17644.5336.1 vs. uniprot
Match: D7FHC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC1_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 3.650e-34
Identity = 65/139 (46.76%), Postives = 95/139 (68.35%), Query Frame = 1
Query:   22 REFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPF------FVDR--ICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCC 414
            ++ NPT+ V+ EL++QG LG     + DR  + DL+ MLCA+N+ L+ S+++ LL+ HSRAKRFFLP  C    P+      FV+   ICL RP+V+VYGI+W+TT + Y+VYD W + ++  +EM+ SD VK +QRCC
Sbjct:  423 KQLNPTYSVIAELNRQGYLGTNVGMHKDRSFWVDLQTMLCADNLALSHSTLSNLLLAHSRAKRFFLPWGC-EPQPWTLKLNRFVNASMICLQRPEVQVYGIDWRTTKDAYTVYDSW-DPNSNMMEMVVSDAVKGVQRCC 559          
BLAST of mRNA_Ecto-sp13_S_contig17644.5336.1 vs. uniprot
Match: A0A6H5L7B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7B0_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 8.430e-32
Identity = 64/136 (47.06%), Postives = 88/136 (64.71%), Query Frame = 1
Query:   28 FNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCA-RGGPFFVDR------ICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCC 414
             NP + V++ ++ QGLLG     + DR L+ DL+ MLCA+++ L+ S+ T LL+ HSRAKRFFLP  C  + G   ++       ICL R +VEVYGIEW+TT   Y+VYD W +  +  LEM+ SD VK +QRCC
Sbjct:  292 LNPAYRVIEGINSQGLLGTNVEMHKDRPLWEDLQAMLCADSLALSHSTFTNLLLAHSRAKRFFLPWGCEPQVGDTTLNHFANATMICLQRSEVEVYGIEWRTTSEAYTVYDSW-DPSSNLLEMVVSDSVKGMQRCC 426          
BLAST of mRNA_Ecto-sp13_S_contig17644.5336.1 vs. uniprot
Match: A0A6H5JNM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM4_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.290e-31
Identity = 64/139 (46.04%), Postives = 93/139 (66.91%), Query Frame = 1
Query:   22 REFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPF------FVDR--ICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCC 414
            ++ NPT+ V+ EL++QG LG     + DR  + DL+ MLCA+++ L+ S+++ LL+ HSRAKRFFLP  C    P+      FV+   ICL RP  EVYGI+W+TT + Y+VYD W + ++  +EM+ SD VK +QRCC
Sbjct:  298 KQLNPTYSVIAELNRQGFLGTNVEMHKDRSFWEDLQAMLCADSLALSHSTLSNLLLAHSRAKRFFLPWGC-EPQPWTLKLNRFVNASMICLQRP--EVYGIDWRTTSDAYTVYDSW-DPNSNMMEMVVSDAVKGVQRCC 432          
BLAST of mRNA_Ecto-sp13_S_contig17644.5336.1 vs. uniprot
Match: A0A836CFK5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFK5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.700e-6
Identity = 37/96 (38.54%), Postives = 48/96 (50.00%), Query Frame = 1
Query:  109 DLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARG---GPFFVDRICLYRPDVEVY--GIEWKTTLNEYSVYDEWINTDAQRLEMIT 381
            D   D+R +LCA N+V A+SS+  LL+ H++  R    T    G       +  +   RPDV  Y  G EW      YS Y  W NT  QRLEM+T
Sbjct:   55 DFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGEWA---GNYSPYSSWQNTYEQRLEMLT 147          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17644.5336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LSV7_ECTSI2.080e-98100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0Z0_9PHAE4.560e-9499.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSJ7_ECTSI6.020e-3547.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHC1_ECTSI3.650e-3446.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7B0_9PHAE8.430e-3247.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNM4_9PHAE1.290e-3146.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CFK5_9STRA1.700e-638.54Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17644contigEcto-sp13_S_contig17644:2527..3641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size423
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001590.1
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462916.9334848-CDS-Ecto-sp13_S_contig17644:2526..26611681462916.9334848-CDS-Ecto-sp13_S_contig17644:2526..2661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17644 2527..2661 -
1681462916.9438539-CDS-Ecto-sp13_S_contig17644:2993..31791681462916.9438539-CDS-Ecto-sp13_S_contig17644:2993..3179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17644 2994..3179 -
1681462916.953322-CDS-Ecto-sp13_S_contig17644:3539..36411681462916.953322-CDS-Ecto-sp13_S_contig17644:3539..3641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17644 3540..3641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17644.5336.1prot_Ecto-sp13_S_contig17644.5336.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17644 2527..3641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17644.5336.1

>prot_Ecto-sp13_S_contig17644.5336.1 ID=prot_Ecto-sp13_S_contig17644.5336.1|Name=mRNA_Ecto-sp13_S_contig17644.5336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
LTNARIQREFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAEN
VVLAKSSITRLLVRHSRAKRFFLPTSCARGGPFFVDRICLYRPDVEVYGI
EWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCVK*
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mRNA from alignment at Ecto-sp13_S_contig17644:2527..3641-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17644.5336.1 ID=mRNA_Ecto-sp13_S_contig17644.5336.1|Name=mRNA_Ecto-sp13_S_contig17644.5336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1115bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17644:2527..3641- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGACAAACGCCAGGATTCAGAGGGAGTTCAATCCCACCTTCGGCGTGTT GCAGGAGCTGGACAAGCAAGGGCTCTTGGGGGCGCCCGCCAATTTCTATC CGGTGCGATGATTTTGAGGGAGAGTAGAAGTTAAGTGTTGTATTGCCGAA GACAAGCGAAGGCTGATTCCGTAAGGTAGGGTTGAAGATGCAGAGAAGCC AACCAAGTGGCTTCCGCTTGACTCGGAACATGTTTTGCGTGGGTGATCAC TGTTCATGTCGACACACATTTTGCGGTTTGTCTTTCGTGTAAAGCTCGTC CTCGAACCTCCGACTGTATTTTAACCCTCCCACTATCTTCGAAGCTCCCG GTCTTCCCACCGCCACTATCGTTGATGACTCGGGTACGTTGCACCGCTTA CATCCACTTTTTTTTTTTGTCGCCGTGCTTTGCGTGTGGATAACCACCAC TTCCAACTCCAGGACCGCGACCTGTACACGGACCTCCGGGACATGCTGTG CGCGGAGAACGTGGTCCTGGCAAAATCGTCCATCACCCGCTTGTTGGTCA GGCATTCGCGGGCGAAGCGGTTCTTCCTCCCGACGTCGTGCGCTCGAGGA GGCCCGTTCTTCGTCGATCGGATCTGCCTCTACAGGCCAGACGTTGAGGT AATGAAAAATATTCTCACTCAATGTACTGCGCCCTGCGAAAACCAATGCT CGTCGAGGCACCCTCTTCTTTTTTCTGGCCTCGGGTAGGGATGACACGAA GTGTCTGTGAAGTCCGACTCTGACGTAGAACCCCGACAGGATGTAATGAT TGTCGACGGGTAAATGTTAGCACCAGTGAAGAAAACAGGCAGAGAAACTT GGCACTTGCTTCGTGCACCTCTTAGGTGAACCACGTCGACTTCGTCACCT ACTGGGGACAACGTTTTACTGTCGGGACACCGTCGCGTTTTGTTTTCGTT GTCGTATGTGGTGACATCCTTGTATTCCAGGTGTACGGCATCGAGTGGAA GACAACTCTCAACGAGTACAGCGTGTACGACGAGTGGATCAACACCGACG CGCAGCGGCTGGAAATGATCACCTCGGATGAAGTCAAGAGTATCCAGCGA TGCTGCGTTAAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17644:2527..3641-

>mRNA_Ecto-sp13_S_contig17644.5336.1 ID=mRNA_Ecto-sp13_S_contig17644.5336.1|Name=mRNA_Ecto-sp13_S_contig17644.5336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17644:2527..3641- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGACAAACGCCAGGATTCAGAGGGAGTTCAATCCCACCTTCGGCGTGTT
GCAGGAGCTGGACAAGCAAGGGCTCTTGGGGGCGCCCGCCAATTTCTATC
CGGACCGCGACCTGTACACGGACCTCCGGGACATGCTGTGCGCGGAGAAC
GTGGTCCTGGCAAAATCGTCCATCACCCGCTTGTTGGTCAGGCATTCGCG
GGCGAAGCGGTTCTTCCTCCCGACGTCGTGCGCTCGAGGAGGCCCGTTCT
TCGTCGATCGGATCTGCCTCTACAGGCCAGACGTTGAGGTGTACGGCATC
GAGTGGAAGACAACTCTCAACGAGTACAGCGTGTACGACGAGTGGATCAA
CACCGACGCGCAGCGGCTGGAAATGATCACCTCGGATGAAGTCAAGAGTA
TCCAGCGATGCTGCGTTAAATGA
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