mRNA_Ecto-sp13_S_contig17640.5335.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17640.5335.1
Unique NamemRNA_Ecto-sp13_S_contig17640.5335.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17640.5335.1 vs. uniprot
Match: D7FKU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKU5_ECTSI)

HSP 1 Score: 427 bits (1099), Expect = 2.470e-149
Identity = 224/256 (87.50%), Postives = 230/256 (89.84%), Query Frame = 1 
Query:    1 MDKALLGVEWRFLAHASDDEPGFSTAWLQQKSLKREADCREREYRNGILAGFANEFGMTSIFPSHRLEQGVDEDDAEGDDVEEEHDNVVCNKTAPQFKFRSR--SPYPRRANHL--KDPPISTVVKTPALPALVAALKKGGVRVDDLQGGESRHAEDTGSWDGVDLASSPCLQQYMVGDNIEDVESAAGNVDAQGRVYGRPGTAQVPVRPSTPPTLLVYKPCISIKVADNVPSELQAMSKLLEMKEKRIE--GPSS 750
            MDKALLGVEWRFLAHASDDEPGFSTAWLQQKSLKREADCREREYRNGILAGFANEFGMTSIFPS RLEQGVDEDDAEGDDVEEEHD+VVCNK  P    R+   +  P R   +  +DPPISTVVKTPALPALVAALKKGGVRVDDLQGG+SRHAEDTGSWDGVDLASSPCLQQYMVGDNIEDVESAAGNV  Q RVYGRP TAQVPVRPSTPPTLLVYKPCISIKVADNVPSELQAMSKLLEMKEKR    GPSS
Sbjct:    1 MDKALLGVEWRFLAHASDDEPGFSTAWLQQKSLKREADCREREYRNGILAGFANEFGMTSIFPSRRLEQGVDEDDAEGDDVEEEHDHVVCNKKGPSTSSRTAPGASLPHRDLPILPEDPPISTVVKTPALPALVAALKKGGVRVDDLQGGDSRHAEDTGSWDGVDLASSPCLQQYMVGDNIEDVESAAGNVGVQERVYGRPSTAQVPVRPSTPPTLLVYKPCISIKVADNVPSELQAMSKLLEMKEKRPTDLGPSS 256
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17640.5335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKU5_ECTSI2.470e-14987.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17640contigEcto-sp13_S_contig17640:297..2369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size882
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_001420.1
Cds size882
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17640.5335.1prot_Ecto-sp13_S_contig17640.5335.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17640 297..2369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462916.8538933-CDS-Ecto-sp13_S_contig17640:296..4471681462916.8538933-CDS-Ecto-sp13_S_contig17640:296..447Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17640 297..447 -
1681462916.865509-CDS-Ecto-sp13_S_contig17640:782..8541681462916.865509-CDS-Ecto-sp13_S_contig17640:782..854Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17640 783..854 -
1681462916.876557-CDS-Ecto-sp13_S_contig17640:963..11901681462916.876557-CDS-Ecto-sp13_S_contig17640:963..1190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17640 964..1190 -
1681462916.8856943-CDS-Ecto-sp13_S_contig17640:1315..14671681462916.8856943-CDS-Ecto-sp13_S_contig17640:1315..1467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17640 1316..1467 -
1681462916.8960495-CDS-Ecto-sp13_S_contig17640:1885..21441681462916.8960495-CDS-Ecto-sp13_S_contig17640:1885..2144Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17640 1886..2144 -
1681462916.9053972-CDS-Ecto-sp13_S_contig17640:2348..23691681462916.9053972-CDS-Ecto-sp13_S_contig17640:2348..2369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17640 2349..2369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17640.5335.1

>prot_Ecto-sp13_S_contig17640.5335.1 ID=prot_Ecto-sp13_S_contig17640.5335.1|Name=mRNA_Ecto-sp13_S_contig17640.5335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=294bp
MDKALLGVEWRFLAHASDDEPGFSTAWLQQKSLKREADCREREYRNGILA
GFANEFGMTSIFPSHRLEQGVDEDDAEGDDVEEEHDNVVCNKTAPQFKFR
SRSPYPRRANHLKDPPISTVVKTPALPALVAALKKGGVRVDDLQGGESRH
AEDTGSWDGVDLASSPCLQQYMVGDNIEDVESAAGNVDAQGRVYGRPGTA
QVPVRPSTPPTLLVYKPCISIKVADNVPSELQAMSKLLEMKEKRIEGPSS
SEMTAPRPSSEVEGAFERSAMTRLKIGMPMKQLSPTRPKGSRSR
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mRNA from alignment at Ecto-sp13_S_contig17640:297..2369-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17640.5335.1 ID=mRNA_Ecto-sp13_S_contig17640.5335.1|Name=mRNA_Ecto-sp13_S_contig17640.5335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2073bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17640:297..2369- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACAAGGCTTTGCTTGGGGTAAGTGAAGAGACATCAGCAAAGCAAAA
ACTCCGGTAAATATTTCAATATTGCAAAACACTCGGCTAATTCTAACTTG
ATGCCTAACTGCATGAGTAAAGTCCTCGTCCAAATCAGCTCTCGCCCATA
TTCCCATACCGCGATGGAAGAGGTCCATCGACTTGCCTCTATGACCTTTG
CTTCCCTCCTGAACAACACAACAAGGTGGAATGGCGCTTCCTTGCACACG
CCTCAGACGACGAACCTGGCTTCTCCACTGCATGGTTGCAACAAAAGTCT
TTGAAGAGGGAGGCCGACTGCAGGGAACGGGAGTACCGAAACGGTATCTT
GGCTGGGTTTGCGAATGAGTTCGGCATGACCAGCATTTTCCCGTCGCACC
GTCTCGAACAAGGCGTCGACGAAGATGATGCAGAAGGCGACGATGTGGAA
GAAGAACATGACAATGTTGTTTGCAATAAAACAGGTGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTCAGCCTGACTCTTTGTGTGTTTGATAA
CGTTGCTGTCGGACAGGTAATCGTAGTCTCCGCAAGGTGCCATATCATCA
AGTTGGTATTCCTACCATATGAGCTATTCCAGGTGTAAGGTATCGCGAGT
AGCACCGCAATTCAAATTTCGATCGCGTTCGCCATACCCCCGGCGTGCGA
ATCACCTGAAGGATCCGCCAATATCCACCGTGGTCAAGACACCCGCTCTG
CCAGCTCTTGTTGCTGCCCTCAAGAAAGGGGGAGTTCGTGTGGATGACCT
ACAGGTACACCAGTGTGTTAACGTGTTATGATTTTGATACTTGAAGCTCC
TCGGAATATCACAAGAGGCCAAACGTGGTAACCTTGGGTCGCGGCGTATT
TTGTCCATGCCCTCTGTGCGGCCGGGTAGGGTGGAGAATCAAGGCATGCG
GAAGACACAGGATCATGGGATGGCGTAGACTTGGCGTCTTCTCCCTGCTT
ACAACAATACATGGTGGGAGACAACATCGAAGATGTCGAAAGCGCTGCGG
GCAACGTGGATGCGCAAGGACGGGTGTACGGTCGACCAGGCACGGCGCAA
GTCCCGGTCAGACCGAGCACGCCCCCGACACTTTTGGTTTACAAACCTTG
CATTAGGTGGGGAGAAGCGCACCGAGCAAGAACTATGGTGTACTCTCGAC
GGGCCTGCCCCGTTCGATCTCTAACACCGCTAACTCTTTTCGTTCTGTTG
CCGAACACTCCGCAGCATCAAGGTTGCCGACAATGTGCCGAGCGAGCTCC
AGGCCATGTCGAAACTGCTGGAAATGAAGGAAAAACGGTGAGTGGTTTTG
GTACTTTGGGCGCAAGCAAGAGGTACCGATTACAGGTTTCTCTTCGCTGT
GTATTGGGGATTATTCCAACGTCTCAGAAGCCTTGACTATCATTCGTTCG
TCCGCCGGACTGTGCGTTTCAAGGTAGGTTATTGCTCGTACACTCTGACC
ATCATGCAAGCATCTGCCTTGGCGGTGAGTGGTCCCTCGCAGCTGGCAAC
AAACTGACAAAAAAAAAATCTGTTGGAGCACGGGACAATCAAGCCGTTCA
CAAGGCTCGACTCGCCAACCTTGCCACGAACTCTAGCTGACGCTCGCCAT
CCTTCGCTGTCTGCACCTTCAGGATAGAGGGGCCATCGTCATCAGAAATG
ACTGCTCCTCGGCCTTCCAGTGAGGTAGAAGGAGCATTTGAAAGAAGCGC
TATGACGAGACTGAAAATTGGAATGCCAATGAAGCAATTGTCGCCAACAC
GCCCGAAAGGCTCTCGCAGCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17640:297..2369-

>mRNA_Ecto-sp13_S_contig17640.5335.1 ID=mRNA_Ecto-sp13_S_contig17640.5335.1|Name=mRNA_Ecto-sp13_S_contig17640.5335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17640:297..2369- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACAAGGCTTTGCTTGGGGTGGAATGGCGCTTCCTTGCACACGCCTC
AGACGACGAACCTGGCTTCTCCACTGCATGGTTGCAACAAAAGTCTTTGA
AGAGGGAGGCCGACTGCAGGGAACGGGAGTACCGAAACGGTATCTTGGCT
GGGTTTGCGAATGAGTTCGGCATGACCAGCATTTTCCCGTCGCACCGTCT
CGAACAAGGCGTCGACGAAGATGATGCAGAAGGCGACGATGTGGAAGAAG
AACATGACAATGTTGTTTGCAATAAAACAGCACCGCAATTCAAATTTCGA
TCGCGTTCGCCATACCCCCGGCGTGCGAATCACCTGAAGGATCCGCCAAT
ATCCACCGTGGTCAAGACACCCGCTCTGCCAGCTCTTGTTGCTGCCCTCA
AGAAAGGGGGAGTTCGTGTGGATGACCTACAGGGTGGAGAATCAAGGCAT
GCGGAAGACACAGGATCATGGGATGGCGTAGACTTGGCGTCTTCTCCCTG
CTTACAACAATACATGGTGGGAGACAACATCGAAGATGTCGAAAGCGCTG
CGGGCAACGTGGATGCGCAAGGACGGGTGTACGGTCGACCAGGCACGGCG
CAAGTCCCGGTCAGACCGAGCACGCCCCCGACACTTTTGGTTTACAAACC
TTGCATTAGCATCAAGGTTGCCGACAATGTGCCGAGCGAGCTCCAGGCCA
TGTCGAAACTGCTGGAAATGAAGGAAAAACGGATAGAGGGGCCATCGTCA
TCAGAAATGACTGCTCCTCGGCCTTCCAGTGAGGTAGAAGGAGCATTTGA
AAGAAGCGCTATGACGAGACTGAAAATTGGAATGCCAATGAAGCAATTGT
CGCCAACACGCCCGAAAGGCTCTCGCAGCAGG
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