prot_Ecto-sp13_S_contig17634.5333.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17634.5333.1
Unique Nameprot_Ecto-sp13_S_contig17634.5333.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length116
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17634.5333.1 vs. uniprot
Match: D7G2J2_ECTSI (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J2_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 4.630e-25
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 
Query:   59 KRAWEVDVEADDKDEGDDTTPSEAFLSLQRELEEKEKIQQENAERAKNQDALAAEAAN 116
            KRAWEVDVEADDKDEGDDTTPSEAFLSLQRELEEKEKIQQENAERAKNQDALAAEAAN
Sbjct:   14 KRAWEVDVEADDKDEGDDTTPSEAFLSLQRELEEKEKIQQENAERAKNQDALAAEAAN 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17634.5333.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2J2_ECTSI4.630e-25100.00PPIase cyclophilin-type domain-containing protein ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 86..107
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 52..116
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..29
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..51
NoneNo IPR availableTMHMMTMhelixcoord: 29..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17634contigEcto-sp13_S_contig17634:1556..2816 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17634.5333.1mRNA_Ecto-sp13_S_contig17634.5333.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17634 1556..2818 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17634.5333.1 ID=prot_Ecto-sp13_S_contig17634.5333.1|Name=mRNA_Ecto-sp13_S_contig17634.5333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
AGVVCVFCLLDCPCFVASRTSRRRRRRARVLFAAASMSSWTEVMILMAWS
ICTATLTHKRAWEVDVEADDKDEGDDTTPSEAFLSLQRELEEKEKIQQEN
AERAKNQDALAAEAAN
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