prot_Ecto-sp13_S_contig17629.5328.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17629.5328.1
Unique Nameprot_Ecto-sp13_S_contig17629.5328.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length76
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17629.5328.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 27..53
e-value: 4.3
score: 16.3
coord: 54..71
e-value: 230.0
score: 4.0
coord: 1..26
e-value: 130.0
score: 5.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..76
e-value: 1.8E-17
score: 64.8
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 1..22
e-value: 0.095
score: 12.8
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 2..75
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 2..75
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 1..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17629contigEcto-sp13_S_contig17629:1794..3622 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17629.5328.1mRNA_Ecto-sp13_S_contig17629.5328.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17629 1794..3622 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17629.5328.1 ID=prot_Ecto-sp13_S_contig17629.5328.1|Name=mRNA_Ecto-sp13_S_contig17629.5328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
CTGLTQLNLSGCLGICGPGLAAVGECCPKLVHLDLLKGCDGVTDVGLAWM
SSGCPALEYLDLSGCVKVCKARLVGL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt