mRNA_Ecto-sp13_S_contig17629.5328.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17629.5328.1
Unique NamemRNA_Ecto-sp13_S_contig17629.5328.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17629.5328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17629contigEcto-sp13_S_contig17629:1794..3622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size228
Hectar predicted targeting categoryother localisation
Exons2
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462916.300179-CDS-Ecto-sp13_S_contig17629:1793..18971681462916.300179-CDS-Ecto-sp13_S_contig17629:1793..1897Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17629 1794..1897 +
1681462916.311928-CDS-Ecto-sp13_S_contig17629:3498..36221681462916.311928-CDS-Ecto-sp13_S_contig17629:3498..3622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17629 3499..3622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17629.5328.1prot_Ecto-sp13_S_contig17629.5328.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17629 1794..3622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17629.5328.1

>prot_Ecto-sp13_S_contig17629.5328.1 ID=prot_Ecto-sp13_S_contig17629.5328.1|Name=mRNA_Ecto-sp13_S_contig17629.5328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
CTGLTQLNLSGCLGICGPGLAAVGECCPKLVHLDLLKGCDGVTDVGLAWM
SSGCPALEYLDLSGCVKVCKARLVGL
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mRNA from alignment at Ecto-sp13_S_contig17629:1794..3622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17629.5328.1 ID=mRNA_Ecto-sp13_S_contig17629.5328.1|Name=mRNA_Ecto-sp13_S_contig17629.5328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1829bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17629:1794..3622+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTACCGGCTTAACCCAGCTTAACCTCAGCGGGTGCCTCGGGATCTGTGG
ACCTGGACTCGCGGCCGTGGGAGAGTGCTGCCCAAAACTGGTGCACCTCG
ATCTGTCCGATTGCAAGCAGGCGAGGAGCACCGTACCTCAAAAGCGAAAC
AAGGCAGCGCCCCCCGTTTCGGGACACTCTGTTAAATTCGGCAACCCCCC
CGAGCTGGGGGCGGTCGGAATTCCTCCTGTACTGAGTGATATATGTGTTG
TTGTGGTTGCTTCTCCTGGTGCCATGCTTCAAAGGCACTGCTTCGGTTCT
GAATGGATCCTACCCCTTCACGGCCGAGGTCATTAGGAGGGCGGTAGAGG
AAGGAAGCAAGGGTGACTCGTTTGAGGGCGTGAGAGTTGGCTTCACCTTT
TCCCCCAACGAATGGCGCCAAGTTCATCTAGTGGAGGTTTCACTTTTCCG
TCTGTTCGTGTTCGAGCGAGCTTTGTTCGTCCGTTGTAGCAGAGAGGGGC
ATGTAGGTTTGTGCCCGTAGCTTCCCCAATAGGTAGCGGGAGACGACGTC
TGAACCACACATCCAACGGGTCTGCGGTAGCAGCCCTGATCCCGTACAGC
AAGAGCAACCTCACACTCTTCTCGCCACTCCCTTCGTCACTGACTGGGTG
CCGCAACGACGCGGAATGCAACGGGACCGAACGGAACGCCAGATTGGGCA
CTGGGTTCTGACGAGACTGTTTCGGGGGTGCGGTGCGCTCGAGACGCTGT
CGCTGGCGCGCTGCTCCCGGGTGGGAGACGAGGAGCTCAAAGAGCTCGGG
GTGGGGTGCCGCGGACTGGTACGCCTAGACCTGAAAGACTGCAACCAGGT
AACTGCCCCCATCTTCTTGTCGGGAACAGCAGTGCCCAAGGAAAAATGAT
TCACCCGTTGGTGCAGTTGCAGTAGCCTTGGAAGGATTTCTCTACCTAGT
AAACATGGAGGATGAAGCGTGCGATCGGGGAAGTTTTGGTCGGTTTAGGG
TTAGGGATGCGTACCCCCTACCTGTTCTATGTACTCATGATTGTGAGGTG
GTCCTGCAGTTGGGGAATGATCCACCGTTGTCTCCAGCACGGAACTCGAC
GTAACCTGGAGGGTTTAAACCCTTCCCTCTGTACGACCGTTACTGACCCT
CACCTTGGACGGTGATTTCCCGGTCGCTTTGCGGTATCCACCCTTGGTGT
GCGCAATGATTGAAAGGTATCCGACACCGGCCTGCTGGAGGTGGCAAGGC
GTTGCAGTTCGCTGACCGTCCTTGAGTTGTCACGTTCAGAGCTGCCCTTC
AAGGTTGGCGATGTAACGCTGATGGTGAGAAGCGAAGCAGCAGGAAGGAG
TCTTCAATTCGCAACACCATAGACCCCCCCTCCGCTTTCTCCTCGCTGTT
GTTGACCAACTGAAGCCCTCGACTGAAGCCAGCTAAAGCCATTGACTGAA
CCCTTTTTCTCGCGAAACAGGTAGCATACTAAATTGCGTGGTGTAAACCA
CCTTGTTTGCCAGGATTCTGGGCCATGGAGGTCAGCGACAACCTGCCGAT
GAGTAAAAAGCACAGGACCCAATGCAAGTCTCTTTTTGCCATGTTTCTCT
GACCCAATCTGATCCGACCCAACCATTCGTTGTTTTTCCGTCCTTCTTCG
TACCCGGTCGAGCTCAGGCTCTGGGTGAGGGCTGCCTCGGACTCCAGTGG
CTTAGCTTGAAGGGTTGCGACGGTGTAACGGATGTCGGCCTTGCGTGGAT
GTCCAGCGGCTGCCCCGCGCTGGAATATCTGGATTTGTCTGGTTGCGTCA
AGGTTTGCAAAGCTAGGTTGGTGGGATTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17629:1794..3622+

>mRNA_Ecto-sp13_S_contig17629.5328.1 ID=mRNA_Ecto-sp13_S_contig17629.5328.1|Name=mRNA_Ecto-sp13_S_contig17629.5328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17629:1794..3622+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTACCGGCTTAACCCAGCTTAACCTCAGCGGGTGCCTCGGGATCTGTGG
ACCTGGACTCGCGGCCGTGGGAGAGTGCTGCCCAAAACTGGTGCACCTCG
ATCTCTTGAAGGGTTGCGACGGTGTAACGGATGTCGGCCTTGCGTGGATG
TCCAGCGGCTGCCCCGCGCTGGAATATCTGGATTTGTCTGGTTGCGTCAA
GGTTTGCAAAGCTAGGTTGGTGGGATTA
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