mRNA_Ecto-sp13_S_contig17624.5327.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17624.5327.1
Unique NamemRNA_Ecto-sp13_S_contig17624.5327.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17624.5327.1 vs. uniprot
Match: D7G636_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G636_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 3.720e-23
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 VQRLQQRVSEGEFYEALQLYKTSYSRLKAQGKLDDAEELLTAGAIAMSKENEV 159
            VQRLQQRVSEGEFYEALQLYKTSYSRLKAQG+LDDAEELLTAGAIAMSKENE+
Sbjct:   15 VQRLQQRVSEGEFYEALQLYKTSYSRLKAQGRLDDAEELLTAGAIAMSKENEL 67
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BLAST of mRNA_Ecto-sp13_S_contig17624.5327.1 vs. uniprot
Match: A0A7S1CAX0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CAX0_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 5.920e-5
Identity = 23/52 (44.23%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    4 QRLQQRVSEGEFYEALQLYKTSYSRLKAQGKLDDAEELLTAGAIAMSKENEV 159
            ++L+  V+ G+FY ALQ+YKT YSR  A+G+  +AE LL+ GA+ M +  ++
Sbjct:   36 EKLKASVAGGDFYSALQMYKTLYSRKNARGRHAEAEALLSEGALVMLEHGQL 87
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BLAST of mRNA_Ecto-sp13_S_contig17624.5327.1 vs. uniprot
Match: A0A196SFJ4_BLAHN (Uncharacterized protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SFJ4_BLAHN)

HSP 1 Score: 47.8 bits (112), Expect = 9.480e-5
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    4 QRLQQRVSEGEFYEALQLYKTSYSRLKAQGKLDDAEELLTAGAIAMSKENE 156
            Q L+ ++SEG +YEALQLYK+  SR +A GK  + +EL   G + M+K N+
Sbjct:   14 QTLETQMSEGNYYEALQLYKSLQSRYEAAGKFKELDELSYHGIVNMNKHNQ 64
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17624.5327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G636_ECTSI3.720e-2396.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1CAX0_9STRA5.920e-544.23Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A196SFJ4_BLAHN9.480e-547.06Uncharacterized protein n=1 Tax=Blastocystis sp. s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17624contigEcto-sp13_S_contig17624:3460..3636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score99.8
Seed ortholog evalue4.6e-19
Seed eggNOG ortholog2880.D7G636
Preferred nameGET4
Model size177
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006508,GO:0006605,GO:0006612,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006996,GO:0007029,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0015031,GO:0015833,GO:0016043,GO:0019538,GO:0030163,GO:0031647,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034976,GO:0036503,GO:0036506,GO:0042221,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045048,GO:0045184,GO:0045185,GO:0046907,GO:0050896,GO:0051087,GO:0051179,GO:0051205,GO:0051220,GO:0051234,GO:0051235,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071816,GO:0071818,GO:0071840,GO:0072379,GO:0072380,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1904378
Exons1
EggNOG free text desc.protein insertion into ER membrane
EggNOG OGsKOG3024@1,KOG3024@2759
Cds size177
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462916.2668414-CDS-Ecto-sp13_S_contig17624:3459..36361681462916.2668414-CDS-Ecto-sp13_S_contig17624:3459..3636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17624 3460..3636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17624.5327.1prot_Ecto-sp13_S_contig17624.5327.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17624 3460..3636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17624.5327.1

>prot_Ecto-sp13_S_contig17624.5327.1 ID=prot_Ecto-sp13_S_contig17624.5327.1|Name=mRNA_Ecto-sp13_S_contig17624.5327.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
VQRLQQRVSEGEFYEALQLYKTSYSRLKAQGKLDDAEELLTAGAIAMSKE
NEVYWDLL*
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mRNA from alignment at Ecto-sp13_S_contig17624:3460..3636-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17624.5327.1 ID=mRNA_Ecto-sp13_S_contig17624.5327.1|Name=mRNA_Ecto-sp13_S_contig17624.5327.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17624:3460..3636- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCAGAGGCTGCAGCAGCGGGTTTCCGAGGGAGAGTTCTACGAGGCCCT
GCAGCTGTACAAGACCTCGTACTCGAGGCTGAAAGCCCAGGGCAAGCTCG
ATGATGCGGAGGAGCTGCTAACGGCGGGCGCCATTGCCATGTCCAAGGAG
AACGAGGTATACTGGGACCTACTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17624:3460..3636-

>mRNA_Ecto-sp13_S_contig17624.5327.1 ID=mRNA_Ecto-sp13_S_contig17624.5327.1|Name=mRNA_Ecto-sp13_S_contig17624.5327.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17624:3460..3636- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCAGAGGCTGCAGCAGCGGGTTTCCGAGGGAGAGTTCTACGAGGCCCT
GCAGCTGTACAAGACCTCGTACTCGAGGCTGAAAGCCCAGGGCAAGCTCG
ATGATGCGGAGGAGCTGCTAACGGCGGGCGCCATTGCCATGTCCAAGGAG
AACGAGGTATACTGGGACCTACTGTAG
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