mRNA_Ecto-sp13_S_contig1762.5324.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1762.5324.1
Unique NamemRNA_Ecto-sp13_S_contig1762.5324.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1762.5324.1 vs. uniprot
Match: A0A6H5JQ54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ54_9PHAE)

HSP 1 Score: 406 bits (1044), Expect = 2.390e-134
Identity = 453/475 (95.37%), Postives = 456/475 (96.00%), Query Frame = 1 
Query:   67 GLRAAAASGWLPFADLITLQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPRIAHERIDSADEGDGSRGAPAFASRVPRPTIEAISWIRASPCSALRDKLPSEAKRLTFGSNFNHTVVGIRWPEGLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPVQDSTNKVKEGGVRLPSTLERIALGSYRRSLTGVSWPPGLLALVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSHFSIDSKVFNHPVSGVSWPDFMTDLHFGDGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLDLGHCHMTWGCGPKEGYETWSPRLEIISRKRISTLGWQRKEGCR 1491
            GLRAAAASGWLPFADLITLQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPRIAHE  DSADEGDGS GAP FASRVPRPTIEAISWIRASPCSALRDKLPSEAKRLTFGSNFNHT+VGIRWPEGLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   V  ST+KVKEGGVR PSTLERIALGSYRRSLTGVSWPPG      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLS FSIDSKVFN+PVSGVSWPDFMTDLHFGDGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLDLGHCHMTWGCGPKEGYE WSPRLEIISRKRISTLGWQRKE CR
Sbjct:   16 GLRAAAASGWLPFADLITLQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPRIAHESTDSADEGDGSGGAPGFASRVPRPTIEAISWIRASPCSALRDKLPSEAKRLTFGSNFNHTLVGIRWPEGLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVH-STDKVKEGGVRWPSTLERIALGSYRRSLTGVSWPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSQFSIDSKVFNYPVSGVSWPDFMTDLHFGDGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLDLGHCHMTWGCGPKEGYENWSPRLEIISRKRISTLGWQRKEECR 489
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BLAST of mRNA_Ecto-sp13_S_contig1762.5324.1 vs. uniprot
Match: D7FU94_ECTSI (Proline dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU94_ECTSI)

HSP 1 Score: 358 bits (920), Expect = 1.530e-109
Identity = 244/256 (95.31%), Postives = 246/256 (96.09%), Query Frame = 1 
Query:    1 AESRPSAATTDDADRCRCRRDAGLRAAAASGWLPFADLITLQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPRIAHERIDSADEGDGSRGAPAFASRVPRPTIEAISWIRASPCSALRDKLPSEAKRLTFGSNFNHTVVGIRWPEGLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPVQDSTNKVKEGGVRLPSTLERIALGSYRRSLTGVSWPPGLLALVL 768
            AESRPSAATTDDADR RCRRDAGLRAAAASGWLPFADLIT QLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPRIAHE  DSADEG+GS GAP FASRVPRPTIEAISWIRASPC ALRDKLPSEAKRL FGSNFNHTVVGIRWPEGLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPVQDST+KVKEGGVR PSTLERI LGSYRRSLTGVSWPPGLLALVL
Sbjct:    3 AESRPSAATTDDADRRRCRRDAGLRAAAASGWLPFADLITFQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPRIAHESTDSADEGEGSGGAPGFASRVPRPTIEAISWIRASPCPALRDKLPSEAKRLAFGSNFNHTVVGIRWPEGLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPVQDSTDKVKEGGVRWPSTLERITLGSYRRSLTGVSWPPGLLALVL 258
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1762.5324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQ54_9PHAE2.390e-13495.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU94_ECTSI1.530e-10995.31Proline dehydrogenase n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1762contigEcto-sp13_S_contig1762:3464..4957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score359.0
Seed ortholog evalue3.6e-96
Seed eggNOG ortholog2880.D7FU94
Model size1494
KEGG rclassRC00083
KEGG koko:K00318
KEGG ReactionR10507
KEGG Pathwayko00330,ko01100,ko01110,ko01130,map00330,map01100,map01110,map01130
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.proline dehydrogenase activity
EggNOG OGsCOG0506@1,KOG0186@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_001350.1
Cds size1494
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462916.0189972-CDS-Ecto-sp13_S_contig1762:3463..49571681462916.0189972-CDS-Ecto-sp13_S_contig1762:3463..4957Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1762 3464..4957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1762.5324.1prot_Ecto-sp13_S_contig1762.5324.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1762 3464..4957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1762.5324.1

>prot_Ecto-sp13_S_contig1762.5324.1 ID=prot_Ecto-sp13_S_contig1762.5324.1|Name=mRNA_Ecto-sp13_S_contig1762.5324.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=498bp
AESRPSAATTDDADRCRCRRDAGLRAAAASGWLPFADLITLQLASLAMCV
ICRHAQKPVLVNVAKRTPKTLWSIDRPRIAHERIDSADEGDGSRGAPAFA
SRVPRPTIEAISWIRASPCSALRDKLPSEAKRLTFGSNFNHTVVGIRWPE
GLEEIRFGSKFSQPVAGVAWPASLKRLSFGQAFDKSLADATFPEGLKEIS
FGSKFNQSLLPVQDSTNKVKEGGVRLPSTLERIALGSYRRSLTGVSWPPG
LLALVLTGEFDLPLAGITLPDSLEELEISSTFNHPIDEVDFPRGLKTLTF
GNQFNQAIDKVKFPAGLERLRLGLSFDQPVARVHFPARLSHFSIDSKVFN
HPVSGVSWPDFMTDLHFGDGFNQEINSAALPPRLVRLALGDRFNKPVLGV
AWPPGLRDLSFGHNFNQPVVDVVWPSSLRRLRFGARFKQCLSGVDWPTGL
ETLDLGHCHMTWGCGPKEGYETWSPRLEIISRKRISTLGWQRKEGCR*
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mRNA from alignment at Ecto-sp13_S_contig1762:3464..4957+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1762.5324.1 ID=mRNA_Ecto-sp13_S_contig1762.5324.1|Name=mRNA_Ecto-sp13_S_contig1762.5324.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1494bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1762:3464..4957+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGAATCGAGACCATCGGCGGCCACAACCGACGATGCTGACAGATGTCG
GTGCCGTCGAGACGCAGGTCTCCGCGCGGCGGCGGCGTCTGGATGGCTCC
CCTTCGCCGACCTCATCACCTTGCAGCTCGCGTCGTTAGCCATGTGCGTC
ATCTGCCGCCATGCGCAGAAGCCGGTGCTGGTGAACGTTGCTAAGCGGAC
ACCGAAGACGCTCTGGTCGATCGACCGCCCACGTATAGCTCATGAAAGAA
TCGACAGCGCCGACGAGGGCGACGGTAGTAGGGGAGCGCCCGCCTTTGCC
AGCCGTGTGCCTCGCCCGACCATCGAAGCCATCTCCTGGATCCGCGCATC
GCCGTGCTCCGCTCTCCGCGACAAGCTTCCCTCAGAGGCGAAGCGGCTGA
CGTTCGGGAGCAACTTCAACCACACGGTGGTCGGTATCCGCTGGCCCGAA
GGGCTGGAGGAGATCAGGTTCGGGTCCAAGTTCTCTCAGCCCGTCGCCGG
AGTCGCGTGGCCGGCCTCCCTGAAACGACTTTCGTTTGGGCAGGCCTTCG
ACAAGTCGCTGGCGGACGCGACGTTTCCCGAAGGCCTGAAAGAAATTTCC
TTCGGCTCAAAGTTCAACCAGAGCTTGCTCCCAGTACAAGACAGCACGAA
CAAAGTCAAGGAGGGAGGGGTACGGTTGCCCTCGACGCTGGAACGCATCG
CCTTGGGAAGCTACCGTAGGAGCTTGACCGGAGTGTCGTGGCCGCCCGGA
CTCCTTGCTCTCGTACTCACGGGTGAGTTCGACCTCCCTCTCGCCGGGAT
AACGCTGCCGGACAGCCTGGAGGAGTTGGAGATCTCCTCGACCTTTAACC
ACCCAATCGACGAGGTGGACTTTCCCCGGGGCTTAAAGACGCTGACGTTC
GGGAACCAGTTCAACCAGGCCATAGACAAGGTCAAGTTCCCGGCGGGGCT
GGAAAGGCTGAGGCTCGGGCTGTCGTTTGATCAGCCCGTGGCGCGGGTTC
ACTTCCCGGCGAGACTGTCGCACTTCTCGATCGACAGTAAAGTATTCAAC
CACCCCGTGAGCGGGGTCTCATGGCCAGATTTTATGACGGATCTTCACTT
CGGGGACGGCTTCAACCAAGAAATCAACTCCGCGGCGTTGCCTCCACGAC
TGGTTCGGCTAGCGTTAGGGGACCGCTTCAACAAGCCGGTCCTGGGTGTG
GCTTGGCCTCCCGGGTTGCGTGACCTGTCGTTCGGCCACAACTTCAACCA
GCCCGTCGTGGACGTCGTGTGGCCGTCGTCCCTCAGACGATTGCGCTTCG
GAGCGCGGTTCAAACAATGTCTCTCCGGGGTAGACTGGCCCACCGGACTG
GAGACGCTCGACCTCGGCCACTGCCACATGACGTGGGGGTGCGGACCCAA
GGAGGGATACGAGACTTGGTCACCACGGCTGGAGATTATCTCGCGGAAGC
GCATTAGCACCCTGGGATGGCAGCGCAAGGAGGGATGCCGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1762:3464..4957+

>mRNA_Ecto-sp13_S_contig1762.5324.1 ID=mRNA_Ecto-sp13_S_contig1762.5324.1|Name=mRNA_Ecto-sp13_S_contig1762.5324.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1494bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1762:3464..4957+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGAATCGAGACCATCGGCGGCCACAACCGACGATGCTGACAGATGTCG
GTGCCGTCGAGACGCAGGTCTCCGCGCGGCGGCGGCGTCTGGATGGCTCC
CCTTCGCCGACCTCATCACCTTGCAGCTCGCGTCGTTAGCCATGTGCGTC
ATCTGCCGCCATGCGCAGAAGCCGGTGCTGGTGAACGTTGCTAAGCGGAC
ACCGAAGACGCTCTGGTCGATCGACCGCCCACGTATAGCTCATGAAAGAA
TCGACAGCGCCGACGAGGGCGACGGTAGTAGGGGAGCGCCCGCCTTTGCC
AGCCGTGTGCCTCGCCCGACCATCGAAGCCATCTCCTGGATCCGCGCATC
GCCGTGCTCCGCTCTCCGCGACAAGCTTCCCTCAGAGGCGAAGCGGCTGA
CGTTCGGGAGCAACTTCAACCACACGGTGGTCGGTATCCGCTGGCCCGAA
GGGCTGGAGGAGATCAGGTTCGGGTCCAAGTTCTCTCAGCCCGTCGCCGG
AGTCGCGTGGCCGGCCTCCCTGAAACGACTTTCGTTTGGGCAGGCCTTCG
ACAAGTCGCTGGCGGACGCGACGTTTCCCGAAGGCCTGAAAGAAATTTCC
TTCGGCTCAAAGTTCAACCAGAGCTTGCTCCCAGTACAAGACAGCACGAA
CAAAGTCAAGGAGGGAGGGGTACGGTTGCCCTCGACGCTGGAACGCATCG
CCTTGGGAAGCTACCGTAGGAGCTTGACCGGAGTGTCGTGGCCGCCCGGA
CTCCTTGCTCTCGTACTCACGGGTGAGTTCGACCTCCCTCTCGCCGGGAT
AACGCTGCCGGACAGCCTGGAGGAGTTGGAGATCTCCTCGACCTTTAACC
ACCCAATCGACGAGGTGGACTTTCCCCGGGGCTTAAAGACGCTGACGTTC
GGGAACCAGTTCAACCAGGCCATAGACAAGGTCAAGTTCCCGGCGGGGCT
GGAAAGGCTGAGGCTCGGGCTGTCGTTTGATCAGCCCGTGGCGCGGGTTC
ACTTCCCGGCGAGACTGTCGCACTTCTCGATCGACAGTAAAGTATTCAAC
CACCCCGTGAGCGGGGTCTCATGGCCAGATTTTATGACGGATCTTCACTT
CGGGGACGGCTTCAACCAAGAAATCAACTCCGCGGCGTTGCCTCCACGAC
TGGTTCGGCTAGCGTTAGGGGACCGCTTCAACAAGCCGGTCCTGGGTGTG
GCTTGGCCTCCCGGGTTGCGTGACCTGTCGTTCGGCCACAACTTCAACCA
GCCCGTCGTGGACGTCGTGTGGCCGTCGTCCCTCAGACGATTGCGCTTCG
GAGCGCGGTTCAAACAATGTCTCTCCGGGGTAGACTGGCCCACCGGACTG
GAGACGCTCGACCTCGGCCACTGCCACATGACGTGGGGGTGCGGACCCAA
GGAGGGATACGAGACTTGGTCACCACGGCTGGAGATTATCTCGCGGAAGC
GCATTAGCACCCTGGGATGGCAGCGCAAGGAGGGATGCCGCTAG
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