mRNA_Ecto-sp13_S_contig17606.5322.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17606.5322.1
Unique NamemRNA_Ecto-sp13_S_contig17606.5322.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17606.5322.1 vs. uniprot
Match: A0A6H5JG89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG89_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.240e-8
Identity = 40/87 (45.98%), Postives = 42/87 (48.28%), Query Frame = 1 
Query:    1 DPGFRLGFNSAGSSASVNHLHFQA----------RRMTAASTHVRWRCGV-----------------------RVHVLLGYPIRALV 162
            DPGFRLGFNSAGSSASVNHLHFQA          R +   S+  R    V                        VHVL GYPIRALV
Sbjct:  453 DPGFRLGFNSAGSSASVNHLHFQAAGCWYFDAGPRGLAIESSKTRHLATVPLSRASFSPSAKGENAADKEDSLEVHVLQGYPIRALV 539
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BLAST of mRNA_Ecto-sp13_S_contig17606.5322.1 vs. uniprot
Match: D7G939_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G939_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 8.090e-8
Identity = 39/84 (46.43%), Postives = 40/84 (47.62%), Query Frame = 1 
Query:    1 DPGFRLGFNSAGSSASVNHLHFQARRMTAA-------STHVRWRCGV-----------------------RVHVLLGYPIRALV 162
            DPGFRLGFNSAGSSASVNHLHFQ     A        S+  R    V                        VHVL GYPIRALV
Sbjct:  367 DPGFRLGFNSAGSSASVNHLHFQCWYFDAGPGGLAIESSKTRHLATVPLPRSSFSPPAEGENAADKEDSLEVHVLQGYPIRALV 450
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BLAST of mRNA_Ecto-sp13_S_contig17606.5322.1 vs. uniprot
Match: UPI001FB0809D (GDP-L-galactose phosphorylase 2-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0809D)

HSP 1 Score: 52.4 bits (124), Expect = 1.850e-6
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    4 PGFRLGFNSAGSSASVNHLHFQARRMT-------AASTHVRW----RCGVRVHVLLGYPIRALV 162
            P +RLG+NS G+ A++NHLHFQA  +        A++  +R     RCGVR+  L+ YP+R LV
Sbjct:  226 PYYRLGYNSLGAFATINHLHFQAYYLEMSFPIEKASTKKIRRMNNNRCGVRISELVNYPVRGLV 289
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BLAST of mRNA_Ecto-sp13_S_contig17606.5322.1 vs. uniprot
Match: B8LLJ1_PICSI (Uncharacterized protein n=2 Tax=Picea sitchensis TaxID=3332 RepID=B8LLJ1_PICSI)

HSP 1 Score: 52.0 bits (123), Expect = 2.530e-6
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    1 DPGFRLGFNSAGSSASVNHLHFQARRMT-------AASTHVRWR---CGVRVHVLLGYPIRALV 162
            +P FRLG+NS G+ A++NHLHFQA  +        A +  V W+    GV++  L  YP+R LV
Sbjct:  213 NPSFRLGYNSLGAFATINHLHFQAYYLALPFPVEKAPTKRVPWKSEKAGVKIFELYNYPVRGLV 276
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BLAST of mRNA_Ecto-sp13_S_contig17606.5322.1 vs. uniprot
Match: UPI000C1D4FAC (GDP-L-galactose phosphorylase 2-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D4FAC)

HSP 1 Score: 52.0 bits (123), Expect = 2.530e-6
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    1 DPGFRLGFNSAGSSASVNHLHFQARRMTA------ASTH--VRWRCGVRVHVLLGYPIRALV 162
            +P FRLG+NS G+ A++NHLHFQA  +        AST       CGV++  +L YP+R LV
Sbjct:  218 NPYFRLGYNSLGAFATINHLHFQAYYLAVPFPIEKASTGKITTTHCGVKISNILNYPVRGLV 279
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BLAST of mRNA_Ecto-sp13_S_contig17606.5322.1 vs. uniprot
Match: B8LL86_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LL86_PICSI)

HSP 1 Score: 51.6 bits (122), Expect = 3.320e-6
Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:    1 DPGFRLGFNSAGSSASVNHLHFQARRMT-------AASTHVRWRC---GVRVHVLLGYPIRALV 162
            +P FRLG+NS G+ A++NHLHFQA  +        A    V W+    G+ +  LL YP+R LV
Sbjct:  189 NPSFRLGYNSLGAFATINHLHFQAYYLDLPFPIEKAPKRRVPWKSEKGGINIFELLNYPVRGLV 252
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BLAST of mRNA_Ecto-sp13_S_contig17606.5322.1 vs. uniprot
Match: A0A6L9GPJ9_9PAST (Uncharacterized protein (Fragment) n=1 Tax=Rodentibacter pneumotropicus TaxID=758 RepID=A0A6L9GPJ9_9PAST)

HSP 1 Score: 51.2 bits (121), Expect = 4.340e-6
Identity = 26/61 (42.62%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    1 DPGFRLGFNSAGSSASVNHLHFQARRMT-------AASTHVRWRCGVRVHVLLGYPIRALV 162
            +P FRLG+NS G+ A++NHLHFQA  +        A S  +    GV++  +L YP+R LV
Sbjct:   65 NPYFRLGYNSLGAFATINHLHFQAYYLATPFPIEKALSKKITTTNGVKISYILNYPVRGLV 125
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BLAST of mRNA_Ecto-sp13_S_contig17606.5322.1 vs. uniprot
Match: A0A165YZV1_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A165YZV1_DAUCS)

HSP 1 Score: 50.4 bits (119), Expect = 8.860e-6
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    4 PGFRLGFNSAGSSASVNHLHFQARRMTA------ASTH--VRWRCGVRVHVLLGYPIRALV 162
            P FRLG+NS G+ A++NHLHFQA  +        AST   +    GV +  LLGYP+R LV
Sbjct:  224 PYFRLGYNSLGAFATINHLHFQAYYLAVPFPIEKASTRKVMNLDDGVEISELLGYPVRGLV 284
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BLAST of mRNA_Ecto-sp13_S_contig17606.5322.1 vs. uniprot
Match: A0A446R252_TRITD (Uncharacterized protein n=2 Tax=Triticeae TaxID=147389 RepID=A0A446R252_TRITD)

HSP 1 Score: 49.7 bits (117), Expect = 1.180e-5
Identity = 24/53 (45.28%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:    4 PGFRLGFNSAGSSASVNHLHFQARRMTAASTHVRWRCGVRVHVLLGYPIRALV 162
            P FRLG+NS G+ A++NHLHFQA              GV+V  L  +P+R LV
Sbjct:    8 PYFRLGYNSLGAFATINHLHFQAPTKKIPLAKCALNSGVKVSKLTNFPVRGLV 60
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BLAST of mRNA_Ecto-sp13_S_contig17606.5322.1 vs. uniprot
Match: A0A6J0JKT3_RAPSA (GDP-L-galactose phosphorylase 1-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0JKT3_RAPSA)

HSP 1 Score: 50.1 bits (118), Expect = 1.190e-5
Identity = 25/62 (40.32%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    1 DPGFRLGFNSAGSSASVNHLHFQARRMTA--------ASTHVRWRCGVRVHVLLGYPIRALV 162
            +P FRLG+NS G+ A++NHLHFQA  +T         +   +    GV++  LL YP+R+L+
Sbjct:  220 NPYFRLGYNSLGAFATINHLHFQAYYLTMPFPLEKAPSKKMITTASGVKISELLSYPVRSLL 281
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17606.5322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JG89_9PHAE1.240e-845.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G939_ECTSI8.090e-846.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001FB0809D1.850e-643.75GDP-L-galactose phosphorylase 2-like n=1 Tax=Impat... [more]
B8LLJ1_PICSI2.530e-642.19Uncharacterized protein n=2 Tax=Picea sitchensis T... [more]
UPI000C1D4FAC2.530e-645.16GDP-L-galactose phosphorylase 2-like n=1 Tax=Olea ... [more]
B8LL86_PICSI3.320e-642.19Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A6L9GPJ9_9PAST4.340e-642.62Uncharacterized protein (Fragment) n=1 Tax=Rodenti... [more]
A0A165YZV1_DAUCS8.860e-647.54Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A446R252_TRITD1.180e-545.28Uncharacterized protein n=2 Tax=Triticeae TaxID=14... [more]
A0A6J0JKT3_RAPSA1.190e-540.32GDP-L-galactose phosphorylase 1-like n=1 Tax=Rapha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17606contigEcto-sp13_S_contig17606:2791..3616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start0
Seed ortholog score60.1
Seed ortholog evalue3.7e-07
Seed eggNOG ortholog3218.PP1S178_130V6.1
Preferred nameVTC2
Model size162
KEGG rclassRC00002
KEGG koko:K14190
KEGG ReactionR07678
KEGG Pathwayko00053,ko01100,ko01110,map00053,map01100,map01110
KEGG ModuleM00114
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000302,GO:0001101,GO:0003674,GO:0003824,GO:0004645,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006950,GO:0006952,GO:0006979,GO:0008150,GO:0008152,GO:0008194,GO:0008905,GO:0008928,GO:0009058,GO:0009108,GO:0009110,GO:0009266,GO:0009408,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009753,GO:0009987,GO:0010033,GO:0010035,GO:0010193,GO:0010471,GO:0010472,GO:0010473,GO:0010474,GO:0010475,GO:0016043,GO:0016051,GO:0016053,GO:0016740,GO:0016757,GO:0016758,GO:0016772,GO:0016779,GO:0019318,GO:0019752,GO:0019852,GO:0019853,GO:0033036,GO:0033037,GO:0033554,GO:0035251,GO:0042221,GO:0042364,GO:0042493,GO:0042545,GO:0042742,GO:0043207,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0045229,GO:0046364,GO:0046394,GO:0046527,GO:0046677,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0052386,GO:0052482,GO:0052542,GO:0052543,GO:0052544,GO:0052545,GO:0070568,GO:0070727,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0080046,GO:0080048,GO:0098542,GO:1901576,GO:1901700
Exons2
EggNOG free text desc.GDP-L-galactose phosphorylase
EggNOG OGs37MIQ@33090,3GDEF@35493,KOG2720@1,KOG2720@2759
EC2.7.7.69
Cds size162
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462915.94706-CDS-Ecto-sp13_S_contig17606:2790..28291681462915.94706-CDS-Ecto-sp13_S_contig17606:2790..2829Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17606 2791..2829 -
1681462915.9612603-CDS-Ecto-sp13_S_contig17606:3493..36161681462915.9612603-CDS-Ecto-sp13_S_contig17606:3493..3616Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17606 3494..3616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17606.5322.1prot_Ecto-sp13_S_contig17606.5322.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17606 2791..3616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17606.5322.1

>prot_Ecto-sp13_S_contig17606.5322.1 ID=prot_Ecto-sp13_S_contig17606.5322.1|Name=mRNA_Ecto-sp13_S_contig17606.5322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
DPGFRLGFNSAGSSASVNHLHFQARRMTAASTHVRWRCGVRVHVLLGYPI
RALV
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mRNA from alignment at Ecto-sp13_S_contig17606:2791..3616-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17606.5322.1 ID=mRNA_Ecto-sp13_S_contig17606.5322.1|Name=mRNA_Ecto-sp13_S_contig17606.5322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=826bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17606:2791..3616- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCCTGGGTTCCGTCTGGGCTTCAACAGCGCGGGCTCGTCGGCCTCGGT
GAACCACCTCCACTTTCAGGCACGTAGGATGACTGCTGCATCAACGCATG
TGCGGTGGCGTTGCGGTGTGCGTGTGGGTGCTGGTGGTTTTCCATTGAGA
CACAACACATCTCTTCTAGGCTACGCACATCTCGTTAGGGTTCATTCCGT
GAGCAAAGGCGGTGTTCACCTCGTTCTTGCAAACTATCCATCTTTGCCCC
GAGTTCGGCGACACAGCTCGTTGACGTTAATTCGTTGTTTTCGTCGGCGG
AAAGACAGAATGTTCCTCACGGCAACAATCAGCAATAGGATACCTTTGAT
GACAGGTTGCCCGCCTCTGCATGTCAAGGTGCATTGCAAGAGCTCCTGAT
CACAGGTACGCTTAACGGGTATTGCAAGAGCTCCTGATCACAGGTACGCT
TAACGGGTATTTCTCCTTACATGTAGAACCTCTGTCTTCGGCATGATGCA
CCCTCTGTCTATGACCCCAGACGTCAGTCTGGCGGGATACAGGAAGTCTG
ACCGCTGCCGCCCCTCCCCCCCCCCCCACCTGTCCGTTCCCGTCCATTTG
CCCTGCCCCCCTTCCCTCAACGTGTTGGTTTTGTCGTCAATAGTGCTGGT
ACTTTGATGCTGGGCCGGGTGGTCTTGCGATCGAGTCTTCCAAGACAAAG
CACCTTGCAACGGTACCTCTTCGACGCTCCTCCTTCTCCCCTCCCGCGGA
GGGCGAAAACGCGGCGGACAAGGAAGACAGCCTTGAGGTTCACGTTCTAC
TAGGATACCCGATCAGGGCACTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17606:2791..3616-

>mRNA_Ecto-sp13_S_contig17606.5322.1 ID=mRNA_Ecto-sp13_S_contig17606.5322.1|Name=mRNA_Ecto-sp13_S_contig17606.5322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17606:2791..3616- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCCTGGGTTCCGTCTGGGCTTCAACAGCGCGGGCTCGTCGGCCTCGGT
GAACCACCTCCACTTTCAGGCACGTAGGATGACTGCTGCATCAACGCATG
TGCGGTGGCGTTGCGGTGTGCGTGTTCACGTTCTACTAGGATACCCGATC
AGGGCACTGGTG
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