mRNA_Ecto-sp13_S_contig17604.5319.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17604.5319.1
Unique NamemRNA_Ecto-sp13_S_contig17604.5319.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17604.5319.1 vs. uniprot
Match: A0A6H5K2Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Q9_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.770e-36
Identity = 71/107 (66.36%), Postives = 75/107 (70.09%), Query Frame = 2 
Query:    2 RVVSSGIARVPCIVCDVVAHIGCLHNAVLEAESGARPPADCGTCIGTIFGPLSGEDLRDWPSTTTIVVSWAEAVMVPAMPAVLKLDMSLEYGCADTARRSTCCKWKK 322
            RVVSSGI RVPCI CD+VAHIGCLHNAVLEAE G R PADCGT                       VVSWAE +M+PAMP V KLD+SLE GCADTARRSTCCKWKK
Sbjct:  218 RVVSSGITRVPCIFCDIVAHIGCLHNAVLEAEGGTRSPADCGT-----------------------VVSWAEVLMMPAMPTVPKLDISLERGCADTARRSTCCKWKK 301
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17604.5319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2Q9_9PHAE2.770e-3666.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17604contigEcto-sp13_S_contig17604:1861..2185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size325
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462915.8151557-CDS-Ecto-sp13_S_contig17604:1860..21841681462915.8151557-CDS-Ecto-sp13_S_contig17604:1860..2184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17604 1861..2184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17604.5319.1prot_Ecto-sp13_S_contig17604.5319.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17604 1861..2184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17604.5319.1

>prot_Ecto-sp13_S_contig17604.5319.1 ID=prot_Ecto-sp13_S_contig17604.5319.1|Name=mRNA_Ecto-sp13_S_contig17604.5319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
TSGLFGDSSRTVHRLRRRRSHWMPSQRRPGGRKRSAPSRRLRNVYWDDLR
AALGRRPQGLAFDDDDSGVLGGSSDGASDASGSEAGHEPRVWVCGHCTKE
HLLQMEEK
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mRNA from alignment at Ecto-sp13_S_contig17604:1861..2185+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17604.5319.1 ID=mRNA_Ecto-sp13_S_contig17604.5319.1|Name=mRNA_Ecto-sp13_S_contig17604.5319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=325bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17604:1861..2185+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGAGTGGTCTCTTCGGGGATAGCTCGCGTACCGTGCATCGTCTGCGACG
TCGTCGCTCACATTGGATGCCTTCACAACGCCGTCCTGGAGGCCGAAAGC
GGAGCGCGCCCTCCCGCCGACTGCGGAACGTGTATTGGGACGATCTTCGG
GCCGCTCTCGGGCGAAGACCTCAGGGACTGGCCTTCGACGACGACGATAG
TGGTGTCTTGGGCGGAAGCAGTGATGGTGCCAGCGATGCCAGCGGTTCTG
AAGCTGGACATGAGCCTCGAGTATGGGTGTGCGGACACTGCACGAAGGAG
CACCTGTTGCAAATGGAAGAAAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17604:1861..2185+

>mRNA_Ecto-sp13_S_contig17604.5319.1 ID=mRNA_Ecto-sp13_S_contig17604.5319.1|Name=mRNA_Ecto-sp13_S_contig17604.5319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17604:1861..2185+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGAGTGGTCTCTTCGGGGATAGCTCGCGTACCGTGCATCGTCTGCGACG
TCGTCGCTCACATTGGATGCCTTCACAACGCCGTCCTGGAGGCCGAAAGC
GGAGCGCGCCCTCCCGCCGACTGCGGAACGTGTATTGGGACGATCTTCGG
GCCGCTCTCGGGCGAAGACCTCAGGGACTGGCCTTCGACGACGACGATAG
TGGTGTCTTGGGCGGAAGCAGTGATGGTGCCAGCGATGCCAGCGGTTCTG
AAGCTGGACATGAGCCTCGAGTATGGGTGTGCGGACACTGCACGAAGGAG
CACCTGTTGCAAATGGAAGAAAAG
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