prot_Ecto-sp13_S_contig17603.5318.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17603.5318.1
Unique Nameprot_Ecto-sp13_S_contig17603.5318.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length293
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17603.5318.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.930e-50
Identity = 284/291 (97.59%), Postives = 286/291 (98.28%), Query Frame = 0 
Query:    3 STAVTTAVFNAGIMACARAGQLEEGMFLLREMWAREISRDVQTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIKSISSATSLSXXXXXXXXXXXXXXXTKPSASWQKVAKLHAEARRRGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNADEGKR 293
            STAVTTAVFNAGIMACARAGQLEEGMFLLREMWARE+SRDVQTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIKSISSA+S SXXXXXXXXXXXX   TKPSASWQKVAKLHAEARRRGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNA EGKR
Sbjct: 1278 STAVTTAVFNAGIMACARAGQLEEGMFLLREMWAREVSRDVQTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIKSISSASSFSXXXXXXXXXXXXE--TKPSASWQKVAKLHAEARRRGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNAGEGKR 1566
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BLAST of mRNA_Ecto-sp13_S_contig17603.5318.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 4.650e-50
Identity = 279/291 (95.88%), Postives = 281/291 (96.56%), Query Frame = 0 
Query:    3 STAVTTAVFNAGIMACARAGQLEEGMFLLREMWAREISRDVQTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIKSISSATSLSXXXXXXXXXXXXXXXTKPSASWQKVAKLHAEARRRGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNADEGKR 293
            STAVTTAVFNAGIMACARAGQLEEGMFLLREMWARE+SRDVQTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AIKSISSA+S  XXXXXXXXX      TKPSASWQKVAKLH EARRRGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNADEGKR
Sbjct: 1146 STAVTTAVFNAGIMACARAGQLEEGMFLLREMWAREVSRDVQTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAIKSISSASSFXXXXXXXXXXE-----TKPSASWQKVAKLHEEARRRGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNADEGKR 1431
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BLAST of mRNA_Ecto-sp13_S_contig17603.5318.1 vs. uniprot
Match: A0A835YXS3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXS3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.870e-8
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 0 
Query:  222 WQKVAKLHAEARRRGKAN--------------------VVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNADEGKR 293
            W     LHAEAR +G AN                    VVTYSAA++ACA  +RWR A  L+++MR  G++PNDY+++A + A  N +  +R
Sbjct: 1393 WDTALALHAEAREKGLANTCESDSVLSXXXXXXXXXXXVVTYSAAMNACAASRRWRAAEGLMSDMRAAGVQPNDYTYAAYIKALANGNRPQR 1484
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17603.5318.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZI4_9PHAE1.930e-5097.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9B5_ECTSI4.650e-5095.88PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A835YXS3_9STRA4.870e-839.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 10..166
e-value: 1.1E-14
score: 54.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 219..293
e-value: 2.3E-15
score: 58.9
coord: 95..211
e-value: 1.9E-31
score: 111.8
coord: 2..94
e-value: 2.8E-20
score: 75.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 239..285
e-value: 1.1E-11
score: 44.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 115..148
e-value: 5.0E-8
score: 30.6
coord: 79..112
e-value: 0.0021
score: 16.1
coord: 241..274
e-value: 8.9E-10
score: 36.1
coord: 45..77
e-value: 0.0027
score: 15.7
coord: 149..182
e-value: 1.2E-5
score: 23.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 239..273
score: 13.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 7..41
score: 8.396
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 147..181
score: 11.553
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 112..146
score: 12.266
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 77..111
score: 10.249
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 42..76
score: 9.361
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 7..199
coord: 228..289

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17603contigEcto-sp13_S_contig17603:3..3507 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17603.5318.1mRNA_Ecto-sp13_S_contig17603.5318.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17603 3..3507 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17603.5318.1 ID=prot_Ecto-sp13_S_contig17603.5318.1|Name=mRNA_Ecto-sp13_S_contig17603.5318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp
MQSTAVTTAVFNAGIMACARAGQLEEGMFLLREMWAREISRDVQTYNTAM
ALCKSAGEWTRAVGLLEAMEADGVAADAVTFNTVIAACEAGADHWTAFSL
FNQMERAGLTPDLWTYNSLANVLGSCGEWERAVALLDDMRARGLRPDVIT
YSALVSACEKAGQVEASLSLLEEMAREGVDANERTFSAAIKSISSATSLS
SSSSSSSPSSSPSSETKPSASWQKVAKLHAEARRRGKANVVTYSAAISAC
AKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNADEGKR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat