mRNA_Ecto-sp13_S_contig17603.5318.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17603.5318.1
Unique NamemRNA_Ecto-sp13_S_contig17603.5318.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17603.5318.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.930e-50
Identity = 284/291 (97.59%), Postives = 286/291 (98.28%), Query Frame = 1 
Query:    7 STAVTTAVFNAGIMACARAGQLEEGMFLLREMWAREISRDVQTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIKSISSATSLSXXXXXXXXXXXXXXXTKPSASWQKVAKLHAEARRRGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNADEGKR 879
            STAVTTAVFNAGIMACARAGQLEEGMFLLREMWARE+SRDVQTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIKSISSA+S SXXXXXXXXXXXX   TKPSASWQKVAKLHAEARRRGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNA EGKR
Sbjct: 1278 STAVTTAVFNAGIMACARAGQLEEGMFLLREMWAREVSRDVQTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIKSISSASSFSXXXXXXXXXXXXE--TKPSASWQKVAKLHAEARRRGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNAGEGKR 1566
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BLAST of mRNA_Ecto-sp13_S_contig17603.5318.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 4.650e-50
Identity = 279/291 (95.88%), Postives = 281/291 (96.56%), Query Frame = 1 
Query:    7 STAVTTAVFNAGIMACARAGQLEEGMFLLREMWAREISRDVQTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIKSISSATSLSXXXXXXXXXXXXXXXTKPSASWQKVAKLHAEARRRGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNADEGKR 879
            STAVTTAVFNAGIMACARAGQLEEGMFLLREMWARE+SRDVQTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AIKSISSA+S  XXXXXXXXX      TKPSASWQKVAKLH EARRRGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNADEGKR
Sbjct: 1146 STAVTTAVFNAGIMACARAGQLEEGMFLLREMWAREVSRDVQTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAIKSISSASSFXXXXXXXXXXE-----TKPSASWQKVAKLHEEARRRGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNADEGKR 1431
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BLAST of mRNA_Ecto-sp13_S_contig17603.5318.1 vs. uniprot
Match: A0A835YXS3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXS3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.870e-8
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:  664 WQKVAKLHAEARRRGKAN--------------------VVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNADEGKR 879
            W     LHAEAR +G AN                    VVTYSAA++ACA  +RWR A  L+++MR  G++PNDY+++A + A  N +  +R
Sbjct: 1393 WDTALALHAEAREKGLANTCESDSVLSXXXXXXXXXXXVVTYSAAMNACAASRRWRAAEGLMSDMRAAGVQPNDYTYAAYIKALANGNRPQR 1484
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17603.5318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZI4_9PHAE1.930e-5097.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9B5_ECTSI4.650e-5095.88PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A835YXS3_9STRA4.870e-839.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17603contigEcto-sp13_S_contig17603:3..3507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score190.7
Seed ortholog evalue9.9e-46
Seed eggNOG ortholog2880.D7G9B5
Model size879
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size879
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17603.5318.1prot_Ecto-sp13_S_contig17603.5318.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17603 3..3507 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462915.7337801-CDS-Ecto-sp13_S_contig17603:2..741681462915.7337801-CDS-Ecto-sp13_S_contig17603:2..74Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17603 3..74 -
1681462915.744363-CDS-Ecto-sp13_S_contig17603:341..4761681462915.744363-CDS-Ecto-sp13_S_contig17603:341..476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17603 342..476 -
1681462915.754477-CDS-Ecto-sp13_S_contig17603:996..11791681462915.754477-CDS-Ecto-sp13_S_contig17603:996..1179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17603 997..1179 -
1681462915.7643187-CDS-Ecto-sp13_S_contig17603:1863..20561681462915.7643187-CDS-Ecto-sp13_S_contig17603:1863..2056Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17603 1864..2056 -
1681462915.7741385-CDS-Ecto-sp13_S_contig17603:2742..28521681462915.7741385-CDS-Ecto-sp13_S_contig17603:2742..2852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17603 2743..2852 -
1681462915.7842503-CDS-Ecto-sp13_S_contig17603:3321..35071681462915.7842503-CDS-Ecto-sp13_S_contig17603:3321..3507Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17603 3322..3507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17603.5318.1

>prot_Ecto-sp13_S_contig17603.5318.1 ID=prot_Ecto-sp13_S_contig17603.5318.1|Name=mRNA_Ecto-sp13_S_contig17603.5318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp
MQSTAVTTAVFNAGIMACARAGQLEEGMFLLREMWAREISRDVQTYNTAM
ALCKSAGEWTRAVGLLEAMEADGVAADAVTFNTVIAACEAGADHWTAFSL
FNQMERAGLTPDLWTYNSLANVLGSCGEWERAVALLDDMRARGLRPDVIT
YSALVSACEKAGQVEASLSLLEEMAREGVDANERTFSAAIKSISSATSLS
SSSSSSSPSSSPSSETKPSASWQKVAKLHAEARRRGKANVVTYSAAISAC
AKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNADEGKR
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mRNA from alignment at Ecto-sp13_S_contig17603:3..3507-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17603.5318.1 ID=mRNA_Ecto-sp13_S_contig17603.5318.1|Name=mRNA_Ecto-sp13_S_contig17603.5318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17603:3..3507- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAGCACCGCAGTCACGACTGCGGTCTTCAACGCCGGGATAATGGC
GTGCGCGCGAGCGGGCCAGCTGGAAGAGGGTATGTTTCTGCTGAGGGAGA
TGTGGGCGCGGGAGATCTCCCGGGACGTACAGACGTACAACACCGCCATG
GCCCTCTGCAAGTCGGCGGGAGAGTGGACACGAGCGGTGGGTTTTGTACC
GTTTCGTTTGCCGTTTCGTTCGTCTTGAGGAAGATGAGATTTCAGTTGTA
CAGTGGGCACTGTCGCAATTGTTCTTTGGGCGGCGGTCCCTCTAGCGCAT
GTGTGGGAAGCATGACAGGGGGCGGTGAGATTGGTGTCGGCTCGTGTCCG
GTCGGCTGCCGTTTCACGCTCTTCTGTGTTAGGCCTCGAGACAAGCGCAG
CTAGCATGTCCAGATCGTGACTCAGGGTCGACAAAGAAGCCTGTTACCCA
CAGGGGAGATATCGATCGCTGGATGCTGCTCGTAGAACCGTAGAAATAGA
AGTTGGTGACTGTACAGCACTATGAATTCGTTGCTAGTCTACCACGGTGT
TGCCTGTGGAGGAGATGGGTTTGCGGTGTTCTTGGGAAGAAAAGTATACC
ATTGACCTGGCTGTGCCCTATCTGTTTGTCAATTGCTCGTGTGTGTTTCT
GTCAGGTGGGGTTGCTGGAGGCTATGGAGGCCGACGGGGTAGCCGCCGAC
GCCGTTACCTTCAACACCGTCATCGCCGCCTGCGAAGCGGGGGCGGACCA
CTGGACGGCCTTCAGGTGCGATCGGTGGTGATTTTTCTTCTCACGCGGTC
AGTGGTAAAGGTGTTGCCGCTGCTGTTGCTGGCTGTTGCTGGCTGCTGCT
GATGGTGCTGCTGTCTGCTGTCTGCTGTCTGCTGCTGCTGCTGCTACTAC
TACTGCTTCTGCTTCTGCTGCCGAGATTGTTGTTGTTGTTGTTGCTGCTG
CTGCGTCGGCGATGGTTGTTAATCCTCTCTCCCCCGTGTGTCGGTCGGGA
GATCAACCAACCACGCCCTATCCCCTTTCGTTCTACTTGCCGTTATGATG
GTGGCTTGCCAAGGAAAACGTACGATTGTTTGGATGCACAGCAGTAACTA
CACGGCAGCGCACGTCATTTCATGTACAGAGGCGGTACATTCTTGGCCTG
CCTCTGCCGCTGCTTCGTCTCCGTAGGCATGCCTACGTCCTTTTATGCTG
TCTACCTGTGCCTCTCTCTGCCGATCTCACGCCCTGCTACCTTGCGTTGT
TTTATTTTCTCCCGCGTGTACCCGTCTGTCTGTAGGCCTGTTCTCTGTGC
CGATTTGGTTTCCCTGGGCATGTTTTATTCCACGAACCGACCTGTATCCG
CTGTTGTTTGTTCCCCCCTGCGTCTTTCCCCCGATTGTCCAATCTCTACC
GTTTTTGTTTTTTTTCCCTGTGCCCGTACATTGATCTGTCCGTGTGCCTA
GCCTATTCAACCAGATGGAGAGGGCGGGGCTTACGCCGGACCTTTGGACG
TACAACTCCTTGGCCAACGTCTTAGGTAGCTGCGGCGAGTGGGAGAGGGC
TGTGGCGTTGTTGGACGACATGAGAGCGAGGGGATTGAGGCCGGACGTCA
TCACGTACTCCGCTCTCGTCAGCGCCTGCGAGAAGGCCGGACAGGTAGGC
TCAAGCTGCATCTCGGGACGAATTTTTTTGGTTGTCGTTCGCTGTTTTGA
TCTTCATGTTGGTTGAGACACGTATAACACGTACTCCGAAAGGGATAGAC
TGGCGAGAGAATGGTTTGACGAAAGCACACACCCACAGCAGTTTTTTTCT
GTCGCTGCTACGATACTTAGATAAGGAAACTAGCGTAGACTCCCCCATGG
CGCTCGGTCACAGGGTCCCAGATCGTGGCCTTGAAGAGGTATTCTCTGTT
TTTCACCGCACTGAGACCGACGCCTTTTCACTGGTCAGCCGGTTAGTACG
GTCGATGCTAATAAGAAGGACACACACACACGGAGTTCCCAGACCATGGC
CTGCAAGAAACATTCCCTGTTTTCCACGGCACGACTGGCGTATTTTCATT
GGTCAGACAATCAGCGTTGTCGACGCTATTATCAAAGACACACACACACG
AAATCTTTCAGACGTCGCCAGAGCTGGCATGTGCGCCGATTTTCGCGTGG
GATGTGGGATGTTTTGTCGCCACCGTTCGTCTGTCGCCAGCGGTACCACT
TTTTTGTCCCTGGCTCTACCGTGTACCCTCCTTTGTCCAGGTGCAGGCTA
GCTTGTCTCTACGTTGCCACGTTTTTTGTCGTAGTACCTTTTTGTCCCTG
ACTCCTCCGTGTACCCTCTTTTGTCCAGGTGGAGGCTAGCTTGTCTCTGC
TGGAAGAGATGGCGAGGGAGGGTGTCGACGCGAACGAGAGGACGTTTAGC
GCGGCCATCAAGTCGATCTCGTCGGCTACCTCCTTGTCATCATCATCATC
ATCATCATCGCCATCATCATCGCCGTCGTCGGAAACAAAGCCCTCCGCTA
GTTGGCAGAAGGTGAGCTCGTCGGCCATCGCCCTCGTTTTCGTGCAGGCA
CTCCAACGCCATCGCGCTCGTTTGAGCAATGCTGAACGAGAGTTGGGAGG
AACTGGATTTGATGTCTCTGTGTTATCGCGCTGTCGCCGGCACTTTTTCG
GTGGCACCACTCGCACAACTGATCCCCCTCCTCGGGCACCACCAACCCTA
ACCCTAACCCTAACGACTATCTGTCGTTGACTTCTATTGGCTCGTGGACC
CTTCGGGTCCATTTTCTTTTCGCATACCTTTTTTGGGCAAGTTAGCCTGT
GACCACGGGAATCGACCGCGTCAACCGTTAGGCTAGTGCGGACAGGAGGA
GGTGCTGGGCAGAGAGAGACGGAACGGTTTTCAATGTGAAGACTAACAAC
AACAAGGACATGTCCGCGCCGGAGCTGGAGGTGCTGGGTAGACTAGGTAC
GCACAATATAATAGATTAGTAGAAGACGACATGTATATGATACATATGGG
GCATCACCCGCACGATCGATGCATGGTGCAGGTGGCCAAGCTCCACGCGG
AGGCGAGGAGGAGGGGGAAGGCAAACGTGGTGACGTACAGCGCCGCCATC
AGCGCCTGCGCTAAGGAGAAGCGGTGGAGGGACGCGCTCGCGCTGCTGGC
GGAGATGCGGCGAGACGTAAGATGGAATGAAACAGTCTTCTGGTACAGCA
CGACGATTCATTCCTTTGCCACAGATGAGGTTGTACCTAGTACTATTTAC
TGCTATTCAGTTGCTAAATGTGTTGAAGGTTGCAAGCGTTTTTTGTCGTG
TTTGCTTTTTTCTCAAGAAAGCACACTTGAGGTGCCGAGCGATTTTTATG
ACCACCTCTGCGAAAAAAGAGTGTGACAACAATCCTCATCCCCCCCAACC
CCCCCCCCGCCATGACATTTTCCAACCCTACAGGGTATCGAGCCCAATGA
CTACAGCTTCAGCGCCGCCATGTGGGCTTGCGTCAACGCGGACGAAGGAA
AGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17603:3..3507-

>mRNA_Ecto-sp13_S_contig17603.5318.1 ID=mRNA_Ecto-sp13_S_contig17603.5318.1|Name=mRNA_Ecto-sp13_S_contig17603.5318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17603:3..3507- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAGCACCGCAGTCACGACTGCGGTCTTCAACGCCGGGATAATGGC
GTGCGCGCGAGCGGGCCAGCTGGAAGAGGGTATGTTTCTGCTGAGGGAGA
TGTGGGCGCGGGAGATCTCCCGGGACGTACAGACGTACAACACCGCCATG
GCCCTCTGCAAGTCGGCGGGAGAGTGGACACGAGCGGTGGGGTTGCTGGA
GGCTATGGAGGCCGACGGGGTAGCCGCCGACGCCGTTACCTTCAACACCG
TCATCGCCGCCTGCGAAGCGGGGGCGGACCACTGGACGGCCTTCAGCCTA
TTCAACCAGATGGAGAGGGCGGGGCTTACGCCGGACCTTTGGACGTACAA
CTCCTTGGCCAACGTCTTAGGTAGCTGCGGCGAGTGGGAGAGGGCTGTGG
CGTTGTTGGACGACATGAGAGCGAGGGGATTGAGGCCGGACGTCATCACG
TACTCCGCTCTCGTCAGCGCCTGCGAGAAGGCCGGACAGGTGGAGGCTAG
CTTGTCTCTGCTGGAAGAGATGGCGAGGGAGGGTGTCGACGCGAACGAGA
GGACGTTTAGCGCGGCCATCAAGTCGATCTCGTCGGCTACCTCCTTGTCA
TCATCATCATCATCATCATCGCCATCATCATCGCCGTCGTCGGAAACAAA
GCCCTCCGCTAGTTGGCAGAAGGTGGCCAAGCTCCACGCGGAGGCGAGGA
GGAGGGGGAAGGCAAACGTGGTGACGTACAGCGCCGCCATCAGCGCCTGC
GCTAAGGAGAAGCGGTGGAGGGACGCGCTCGCGCTGCTGGCGGAGATGCG
GCGAGACGGTATCGAGCCCAATGACTACAGCTTCAGCGCCGCCATGTGGG
CTTGCGTCAACGCGGACGAAGGAAAGCGG
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