mRNA_Ecto-sp13_S_contig17600.5316.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17600.5316.1
Unique NamemRNA_Ecto-sp13_S_contig17600.5316.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17600.5316.1 vs. uniprot
Match: D7FIR4_ECTSI (Nucleolar GTP-binding protein 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR4_ECTSI)

HSP 1 Score: 517 bits (1331), Expect = 4.440e-179
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1 
Query:    1 MVVYNFKKMASVPPAEDLIDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIGDFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLVEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQCCVLYFIDIS 774
            MVVYNFKKMASVPPAEDLIDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIGDFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLVEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQCCVLYFIDIS
Sbjct:    1 MVVYNFKKMASVPPAEDLIDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIGDFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLVEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQCCVLYFIDIS 258
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BLAST of mRNA_Ecto-sp13_S_contig17600.5316.1 vs. uniprot
Match: A0A836CDN0_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDN0_9STRA)

HSP 1 Score: 481 bits (1238), Expect = 5.950e-165
Identity = 238/258 (92.25%), Postives = 247/258 (95.74%), Query Frame = 1 
Query:    1 MVVYNFKKMASVPPAEDLIDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIGDFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLVEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQCCVLYFIDIS 774
            MVVYNFKKMA VP A+D IDI+LTRTQRKTPTV+HPGY I+RIR FYMRKVKFTQET+SERLG II DFPRLDDIHPFYADLLNILYDRDHYKLALGQ+NMAKKL+EALSRDYVRLLKYGDSLYRCKQLKRAALGRM TLLKRQKASLSYLEEVR+HLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRA VDVQPYAFTTKSLYVGHMDYRYLRWQVVDTPGILDH LEERNTIEMQAVTALAHLQCCVL+ IDIS
Sbjct:    1 MVVYNFKKMAPVPAADDFIDIVLTRTQRKTPTVVHPGYNINRIRQFYMRKVKFTQETLSERLGQIIMDFPRLDDIHPFYADLLNILYDRDHYKLALGQINMAKKLMEALSRDYVRLLKYGDSLYRCKQLKRAALGRMMTLLKRQKASLSYLEEVRKHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRANVDVQPYAFTTKSLYVGHMDYRYLRWQVVDTPGILDHALEERNTIEMQAVTALAHLQCCVLFMIDIS 258
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BLAST of mRNA_Ecto-sp13_S_contig17600.5316.1 vs. uniprot
Match: A0A6V1RDW6_HETAK (Nucleolar GTP-binding protein 1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RDW6_HETAK)

HSP 1 Score: 458 bits (1178), Expect = 3.050e-156
Identity = 216/258 (83.72%), Postives = 241/258 (93.41%), Query Frame = 1 
Query:    1 MVVYNFKKMASVPPAEDLIDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIGDFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLVEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQCCVLYFIDIS 774
            MVVYNFKK+  +P A D +DIIL++TQRKTPTV+HP Y I RIR+FYMRKVKFTQ+ ISERLG +I DFPRLDDIHPFYADL+NILYDRDHYKLALGQ+N AK L+E LSRDYVRL+KYGDSLYRCKQLKRAA+GRM T+LK+QKA+LSYL+EVR+HL RLPALDPNTRTLL+TG+PNVGKSSFMNKVTRA VDVQPYAFTTKSLYVGHMDYRYLRWQVVDTPG+LDHPLEERNTIEMQA+TALAHLQCCVLYF+D+S
Sbjct:    1 MVVYNFKKIQPIPGAGDFVDIILSKTQRKTPTVVHPQYSIQRIRAFYMRKVKFTQQNISERLGQVIADFPRLDDIHPFYADLINILYDRDHYKLALGQLNTAKNLIEVLSRDYVRLMKYGDSLYRCKQLKRAAMGRMMTILKKQKAALSYLDEVRKHLGRLPALDPNTRTLLVTGYPNVGKSSFMNKVTRANVDVQPYAFTTKSLYVGHMDYRYLRWQVVDTPGLLDHPLEERNTIEMQAITALAHLQCCVLYFVDVS 258
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BLAST of mRNA_Ecto-sp13_S_contig17600.5316.1 vs. uniprot
Match: A0A7S3MAG3_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAG3_9STRA)

HSP 1 Score: 453 bits (1166), Expect = 4.380e-154
Identity = 213/258 (82.56%), Postives = 245/258 (94.96%), Query Frame = 1 
Query:    1 MVVYNFKKMASVPPAEDLIDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIGDFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLVEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQCCVLYFIDIS 774
            MVVYNFKK+A +P A ++IDI+LTRTQRKTPTVIHPGYKI+RIR+FYMRKVKFTQ+TI E+LGA + DFPRLDDIHPFYADL+NILYDRDH+KLALGQ+N AK L+  L++DY+RLLKYGDSLYRCKQLKRAALGRMCT+LK+ KASL YLEEVR+H++RLPALDPNTRTLLLTG+PNVGKSSFMNKVTRA+V+VQPYAFTTK+L+VGHMD+R+LRWQVVDTPGILD PLEERNTIEMQA+TALAHLQCCVLYF+D+S
Sbjct:   20 MVVYNFKKIAPIPSASEMIDIVLTRTQRKTPTVIHPGYKITRIRNFYMRKVKFTQQTIGEKLGATLQDFPRLDDIHPFYADLMNILYDRDHFKLALGQVNTAKNLIAGLAKDYLRLLKYGDSLYRCKQLKRAALGRMCTVLKKLKASLGYLEEVRKHISRLPALDPNTRTLLLTGYPNVGKSSFMNKVTRADVEVQPYAFTTKALFVGHMDHRFLRWQVVDTPGILDRPLEERNTIEMQAITALAHLQCCVLYFLDVS 277
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BLAST of mRNA_Ecto-sp13_S_contig17600.5316.1 vs. uniprot
Match: A0A7S2BZF7_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BZF7_9STRA)

HSP 1 Score: 451 bits (1159), Expect = 2.270e-153
Identity = 209/255 (81.96%), Postives = 243/255 (95.29%), Query Frame = 1 
Query:   10 YNFKKMASVPPAEDLIDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIGDFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLVEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQCCVLYFIDIS 774
            YNFK +A VPPA+  IDI+LTRTQR+TPTV+HPGY I+RIR+FYMRKVK+TQ+T SERLG I+  FPRLDDIHPFYADL+NILYDRDHYKLALGQ+N++K+L++ L+RDYVRL+KYGDSLYRCKQLKRAA+GRM T+LKRQKASLSYLEEVR+HL+RLP++DPNTRTL++ G+PNVGKSSFMNKVTRA+V+VQPYAFTTKSL+VGHMDYRYLRWQVVDTPGILDHPL+ERNTIEMQA+TALAHLQCCVLYF+DIS
Sbjct:    6 YNFKSIAPVPPADQFIDIVLTRTQRRTPTVVHPGYAINRIRAFYMRKVKYTQQTASERLGEILTSFPRLDDIHPFYADLMNILYDRDHYKLALGQINISKRLIDTLARDYVRLIKYGDSLYRCKQLKRAAMGRMMTILKRQKASLSYLEEVRKHLSRLPSIDPNTRTLIVCGYPNVGKSSFMNKVTRADVEVQPYAFTTKSLFVGHMDYRYLRWQVVDTPGILDHPLDERNTIEMQAITALAHLQCCVLYFLDIS 260
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BLAST of mRNA_Ecto-sp13_S_contig17600.5316.1 vs. uniprot
Match: A0A485LFQ9_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFQ9_9STRA)

HSP 1 Score: 443 bits (1140), Expect = 2.570e-150
Identity = 210/258 (81.40%), Postives = 241/258 (93.41%), Query Frame = 1 
Query:    1 MVVYNFKKMASVPPAEDLIDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIGDFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLVEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQCCVLYFIDIS 774
            MVVYNFKK+ +VPPA + IDIILTRTQRKTPTVIHP Y ISRIR+FYMRKVKFTQ+T  E+L  II DFPRLDDIHPFYADL+NILYD+DHYKLALGQ+N A+ L++ +++DYVR++KYGD+LYRCKQLKRAALGR+CTLLK+ K+SL YLEEVR+HL+RLP++DPNTRTLL+TGFPNVGKSSFMNKVTRA+VDVQPYAFTTK+LYVGHMDY+YLRWQV+DTPGILDHPLEERNTIEMQAVTALAHLQ  VL+FIDIS
Sbjct:    1 MVVYNFKKIQTVPPANNFIDIILTRTQRKTPTVIHPTYAISRIRAFYMRKVKFTQQTCQEKLSQIIDDFPRLDDIHPFYADLINILYDKDHYKLALGQINTARALIDNIAKDYVRMIKYGDTLYRCKQLKRAALGRICTLLKKNKSSLDYLEEVRKHLSRLPSIDPNTRTLLVTGFPNVGKSSFMNKVTRADVDVQPYAFTTKALYVGHMDYKYLRWQVIDTPGILDHPLEERNTIEMQAVTALAHLQASVLFFIDIS 258
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BLAST of mRNA_Ecto-sp13_S_contig17600.5316.1 vs. uniprot
Match: A0A8K1CJQ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJQ2_PYTOL)

HSP 1 Score: 443 bits (1139), Expect = 3.760e-150
Identity = 208/258 (80.62%), Postives = 241/258 (93.41%), Query Frame = 1 
Query:    1 MVVYNFKKMASVPPAEDLIDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIGDFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLVEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQCCVLYFIDIS 774
            MVVYNFKK+ +VP A D IDI+LTRTQRKTPTVIHP Y ISRIR+FYMRKVKFTQ+T  E+L  II DFPRLDD+HPFYADL+NILYDRDHYKLALGQ+N A+ L++ +++DYVR++KYGD+LYRCKQLKRAALGRMCTLLK+QKASL YLEEVR+HL+RLP++DPNTRTLL+TGFPNVGKSSFMNKVTRA+VDVQPYAFTTK+LYVGH+DY+YLRWQV+DTPGILDHPLE+RNTIEMQAVTALAHLQ  +L+F+DIS
Sbjct:    1 MVVYNFKKIQTVPSANDFIDIVLTRTQRKTPTVIHPTYAISRIRAFYMRKVKFTQQTCQEKLSQIIDDFPRLDDLHPFYADLINILYDRDHYKLALGQVNTARALIDNIAKDYVRMIKYGDTLYRCKQLKRAALGRMCTLLKKQKASLEYLEEVRKHLSRLPSIDPNTRTLLVTGFPNVGKSSFMNKVTRADVDVQPYAFTTKALYVGHLDYKYLRWQVIDTPGILDHPLEDRNTIEMQAVTALAHLQASILFFMDIS 258
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17600.5316.1 vs. uniprot
Match: A0A1V9YZS5_9STRA (Nucleolar GTP-binding protein 1 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YZS5_9STRA)

HSP 1 Score: 442 bits (1138), Expect = 5.160e-150
Identity = 209/258 (81.01%), Postives = 240/258 (93.02%), Query Frame = 1 
Query:    1 MVVYNFKKMASVPPAEDLIDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIGDFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLVEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQCCVLYFIDIS 774
            MVVYNFKK+  VPPA D +DIILTRTQRKTPTVIHP Y ISRIR+FYMRKVKFTQ+T  E+L  II DFPRLDDIHPFYADL+NILYD+DHYKLALGQ+N A+ L++ +++DYVR++KYGD+LYRCKQLKRAALGR+CTLLK+ K+SL YLEEVR+HL+RLP++DPNTRTLL+TGFPNVGKSSFMNKVTRA+VDVQPYAFTTK+LYVGHMDY+YLRWQV+DTPGILDHPLEERNTIEMQAVTALAHLQ  VL+F+DIS
Sbjct:    1 MVVYNFKKIQIVPPASDFVDIILTRTQRKTPTVIHPTYAISRIRAFYMRKVKFTQQTCQEKLSQIIDDFPRLDDIHPFYADLINILYDKDHYKLALGQINTARALIDNIAKDYVRMIKYGDTLYRCKQLKRAALGRICTLLKKNKSSLDYLEEVRKHLSRLPSIDPNTRTLLVTGFPNVGKSSFMNKVTRADVDVQPYAFTTKALYVGHMDYKYLRWQVIDTPGILDHPLEERNTIEMQAVTALAHLQASVLFFMDIS 258
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17600.5316.1 vs. uniprot
Match: K3WEI8_GLOUD (Nucleolar GTP-binding protein 1 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WEI8_GLOUD)

HSP 1 Score: 442 bits (1137), Expect = 6.670e-150
Identity = 209/258 (81.01%), Postives = 240/258 (93.02%), Query Frame = 1 
Query:    1 MVVYNFKKMASVPPAEDLIDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIGDFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLVEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQCCVLYFIDIS 774
            MVVYNFKK+ +VP A D IDI+LTRTQRKTPTVIHP Y ISRIR+FYMRKVKFTQ+T  E+L  II DFPRLDD+HPFYADL+NILYDRDHYKLALGQ+N A+ L++ +++DYVR++KYGDSLYRCKQLKRAALGRMCTLLK+QKASL YLEEVR+HL+RLP++DPNTRTLL+TGFPNVGKSSFMNKVTRA+VDVQPYAFTTK+LYVGH+DY+YLRWQV+DTPGILDH LEERNTIEMQAVTALAHLQ  +L+F+DIS
Sbjct:    1 MVVYNFKKIQTVPSASDFIDIVLTRTQRKTPTVIHPTYAISRIRAFYMRKVKFTQQTCQEKLSQIIDDFPRLDDLHPFYADLINILYDRDHYKLALGQVNTARALIDNIAKDYVRMIKYGDSLYRCKQLKRAALGRMCTLLKKQKASLEYLEEVRKHLSRLPSIDPNTRTLLVTGFPNVGKSSFMNKVTRADVDVQPYAFTTKALYVGHLDYKYLRWQVIDTPGILDHALEERNTIEMQAVTALAHLQASILFFMDIS 258
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17600.5316.1 vs. uniprot
Match: M4C649_HYAAE (Nucleolar GTP-binding protein 1 n=21 Tax=Peronosporaceae TaxID=4777 RepID=M4C649_HYAAE)

HSP 1 Score: 442 bits (1136), Expect = 9.740e-150
Identity = 209/258 (81.01%), Postives = 240/258 (93.02%), Query Frame = 1 
Query:    1 MVVYNFKKMASVPPAEDLIDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIGDFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLVEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQCCVLYFIDIS 774
            MVVYNFKK+ +VP A D IDI+LTRTQRKTPTVIHP Y ISRIR+FYMRKVKFTQ+T  E+L  II DFPRLDD+HPFYADL+NILYDRDHYKLALGQ+N A+ L++ +++DYVR++KYGDSLYRCKQLKRAALGRMCTLLK+QKASL YLEEVR+HL+RLP++DPNTRTLL+TGFPNVGKSSFMNKVTRA+VDVQPYAFTTK+LYVGH+DY+YLRWQV+DTPGILDH LE+RNTIEMQAVTALAHLQ  VL+F+DIS
Sbjct:    1 MVVYNFKKIQTVPTANDFIDIVLTRTQRKTPTVIHPTYAISRIRAFYMRKVKFTQQTCQEKLSQIIDDFPRLDDLHPFYADLINILYDRDHYKLALGQVNTARALIDNIAKDYVRMIKYGDSLYRCKQLKRAALGRMCTLLKKQKASLEYLEEVRKHLSRLPSIDPNTRTLLITGFPNVGKSSFMNKVTRADVDVQPYAFTTKALYVGHLDYKYLRWQVIDTPGILDHALEDRNTIEMQAVTALAHLQASVLFFMDIS 258
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17600.5316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIR4_ECTSI4.440e-179100.00Nucleolar GTP-binding protein 1 n=2 Tax=Ectocarpus... [more]
A0A836CDN0_9STRA5.950e-16592.25Nucleolar GTP-binding protein 1 n=1 Tax=Tribonema ... [more]
A0A6V1RDW6_HETAK3.050e-15683.72Nucleolar GTP-binding protein 1 n=1 Tax=Heterosigm... [more]
A0A7S3MAG3_9STRA4.380e-15482.56Nucleolar GTP-binding protein 1 n=1 Tax=Spumella e... [more]
A0A7S2BZF7_9STRA2.270e-15381.96Nucleolar GTP-binding protein 1 n=1 Tax=Dictyocha ... [more]
A0A485LFQ9_9STRA2.570e-15081.40Nucleolar GTP-binding protein 1 n=1 Tax=Aphanomyce... [more]
A0A8K1CJQ2_PYTOL3.760e-15080.62Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YZS5_9STRA5.160e-15081.01Nucleolar GTP-binding protein 1 n=4 Tax=Saprolegni... [more]
K3WEI8_GLOUD6.670e-15081.01Nucleolar GTP-binding protein 1 n=2 Tax=Pythiaceae... [more]
M4C649_HYAAE9.740e-15081.01Nucleolar GTP-binding protein 1 n=21 Tax=Peronospo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17600contigEcto-sp13_S_contig17600:1..3154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score518.8
Seed ortholog evalue1.4e-144
Seed eggNOG ortholog2880.D7FIR4
Model size774
KEGG koko:K06943,ko:K11269,ko:K19307
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0017076,GO:0019001,GO:0022613,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363
Exons6
EggNOG free text desc.negative regulation of collagen binding
EggNOG OGsCOG1084@1,KOG1490@2759
EC2.1.1.313
Cds size774
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17600.5316.1prot_Ecto-sp13_S_contig17600.5316.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17600 1..3154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462915.5552418-CDS-Ecto-sp13_S_contig17600:0..1201681462915.5552418-CDS-Ecto-sp13_S_contig17600:0..120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17600 1..120 -
1681462915.5712636-CDS-Ecto-sp13_S_contig17600:864..9571681462915.5712636-CDS-Ecto-sp13_S_contig17600:864..957Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17600 865..957 -
1681462915.5812273-CDS-Ecto-sp13_S_contig17600:1390..15931681462915.5812273-CDS-Ecto-sp13_S_contig17600:1390..1593Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17600 1391..1593 -
1681462915.5913618-CDS-Ecto-sp13_S_contig17600:2023..21621681462915.5913618-CDS-Ecto-sp13_S_contig17600:2023..2162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17600 2024..2162 -
1681462915.6093366-CDS-Ecto-sp13_S_contig17600:2447..25851681462915.6093366-CDS-Ecto-sp13_S_contig17600:2447..2585Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17600 2448..2585 -
1681462915.6192856-CDS-Ecto-sp13_S_contig17600:3073..31541681462915.6192856-CDS-Ecto-sp13_S_contig17600:3073..3154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17600 3074..3154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17600.5316.1

>prot_Ecto-sp13_S_contig17600.5316.1 ID=prot_Ecto-sp13_S_contig17600.5316.1|Name=mRNA_Ecto-sp13_S_contig17600.5316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=258bp
MVVYNFKKMASVPPAEDLIDIILTRTQRKTPTVIHPGYKISRIRSFYMRK
VKFTQETISERLGAIIGDFPRLDDIHPFYADLLNILYDRDHYKLALGQMN
MAKKLVEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSY
LEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAF
TTKSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQCC
VLYFIDIS
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mRNA from alignment at Ecto-sp13_S_contig17600:1..3154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17600.5316.1 ID=mRNA_Ecto-sp13_S_contig17600.5316.1|Name=mRNA_Ecto-sp13_S_contig17600.5316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3154bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17600:1..3154- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGTGTACAATTTCAAGAAGATGGCGTCGGTGCCTCCGGCGGAAGA
CCTGATCGACATCATCCTTACCCGAACGCAGGTACTGCTGTGCTGCCCTC
CGAGGAATGGATAGACGTAGACAGCAGTGGTAGCTTGGTTGGCGCTGACG
TCGTCGTCGTCGTCTTCGTTTTTTTGTGTTGCTGTTGTTGGTGTTAGTGA
TCGGTGCAATCAGTGTTTGTTGTTGTTGGCGACGGATGAGATTGTGCCAG
TTCCGCCCGCCTTTGCTACTGCTGCTTATATCACCACATGTTTGCCTTGT
TTCAAGAGCATGGGTGTGGCCTAGCCCAGTCGTTTGCTCGGCTGGTTCAA
CAATCCATTTCCCGCGCCCATCAACACCAGTAGCGTGCACCCACGGAAAT
CGCGCACCATTGGACGGCTTTGTGACACGCTCAGCAGTTCTTGTGCACCA
AGTATTCCGCCGAGTCCCTGTATTTCAACACTCTCCCCCCGCCTCTTCTT
CTTCGCCCTCCATTCTCTACAACTCCGCCTCTGTGGAACTCGTTCTCTGT
GAATCTGCTTCTTTCCCAGCGCAAAACGCCGACAGTGATTCACCCAGGCT
ACAAGATCAGTCGGATCAGGTCCTTCTACATGCGGAAGGTCAAGTTCACG
CAGGAGACGATTAGCGAGAGGCTCGGCGCTATCATCGGGGACTTCCCGCG
CCTTGACGTGAGTCACTGGCCTTCTCTTGCAGTTCCCTTCTCTCTCCAGG
GGTCGAAATGGAGCGGGTATGCCTCGTCACGCGGTCAACGACAGTTTATC
TTGCCCTCCGCAGTTGACGCAAGCCTTACCTGCCATGTTTGCAACGAAAT
GCGTCCCAACAAGTCCTCGAACACTTGTTCTTTGTCAATATCTTGTTCAT
TTGCAACCACTGCTCGTAGAACACCTGTTCTCAGGCCCTCTTGAATACTT
TGTCTTGGCGCTTGCTGTCACATTGCTGTCTATTTTGTGCAGGACATCCA
CCCGTTTTACGCAGACCTGCTCAACATCCTGTACGATCGCGACCACTACA
AGCTGGCGCTGGGGCAGATGAACATGGCCAAGAAGCTTGTCGAAGCTTTG
AGCCGCGACTACGTGCGACTCCTGAAGTATGGTGAGCGGCCGCAGTCGTA
ACTGGTCTTTTTTTCATTTTTGTGCCGTTTTTTTCCCGCTGGTTGTTGAT
CTTTGTAGGACTGTTCGCGGTAAAACGCTCACGCGAATTATGGTTACTGA
CCCCTTTAAAGCATATCGCTCTGTCCCGGCATTATAGGGATGGGAGGTGA
ATCGCGTAGCGACCACGACATGCGTTTACACATGAGCACACACACGCCCT
CCGCGCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCGCCCCCCCCCC
TCCCCGCGGCAGCAACACAAGCCAGCAAGGCACCGGCGCCCGGGGNNNNN
NNNNNTTCCGCAACGCGTGTGAGGATGAGGCCGGTCACTTGTCTATCCCA
CCGAGCGCGCACAGTATCGAGGACCCCCCCCCCCCCCCCCCCGGCCGTTG
ACGGCACACAGGGGACTCGCTCTACCGGTGCAAGCAGCTCAAGCGAGCAG
CGCTCGGCCGCATGTGCACGCTGCTCAAGAGGCAGAAGGCTTCGCTCTCG
TACCTGGAGGAAGTGCGCCGGCACCTCGCCCGTCTCCCCGCCCTCGACCC
CAACACGAGGACCCTCCTGCTCACCGGCTTCCCCAACGTGGGCAAGTCCA
GCTTCATGAACAAGGTTCGTTCTCGGCAGCAGCGATTGGATGGGGGGTAA
GAGGGGCTGGACGGGCATAGGTAGATTTTGGTTTTGCGTGTGGATGTTGC
GGCGGGGTACAGGTTCGACACAAGCGTTTCTTTCTCGGGACTTTTGTGTT
GGGTTAAAATCGTCTATTGAGCCATTTGGTTTTTTGTCGTCAAAGAAGGT
GTTCTTTTGCGTGTTCATGGTCCGCCCTTCCGGTGGTACATGGCCTTCAT
CCTCTGTTCCGATTTGCCTTTCTGGCTGTGCACGTGTATCGCATATTTTT
TGCGCACAGAGGGGAGCGCGTCCCGCCCCTATCATTTTCCTGGCGGCCTT
GTTCCCATGCTGGCGTCAGTCAAGACCGTCGTGTCGTTGCGACTACACCG
AGACGCTGAAAATCGATGCCCCCCCCTCCCGACGCGGAATCACACAGGTC
ACTCGGGCGGAGGTAGACGTGCAGCCGTACGCCTTTACCACCAAGTCCCT
CTACGTCGGACACATGGACTACCGCTATCTACGTTGGCAGGTGTGCGCCC
TTGAATAGTGGGGGTGGCTGGAGGGTGGGACACACATCGGAGAGGGGAAT
ACGGGGGGGGGGTTCAAGGGAGTGACGTCGGATGTCGGGTGGCATCGACT
TGGCCAGGGATGGCTGTGGAGAGCCGTGAGAGTCTTTGGCGGCGGGTTGG
GTACTGTAGGGGCAGAAAATCCTAGGCGAAGGCAGCGTGTTTGGGGGTAC
AGTGCCCGGCGGTGCTTGTTGACTCACGGCGGCGTGTTTCTGGTAGAGGC
GCTGCCTTTGACGCCCTTTGACGCCACCGCCGTCAATGTTTGTACAAGAA
CGCCGTCTAGTCGGCCAGCCTAGACGGCCGACTAGACGGCGGTTTCCCGG
CGTTGGCCTCGCCTTCCGAGAAGACGAGAAAACCGGACGTCCCTTTGTCG
TTAGGAAAGCCTATCCCCCCTTCCGCGCGCACGCAGCGCAAACGTGAAGA
ATTCGAGTGCTGGTATATTTGTTCTCCTGACTTTGTGTTCTTAGGTTCTG
TTGGCTTGCGGACCCTTCGGGTCTAATTCTTTTTAGTATACCTTTGTTTT
GGGTATGGTAGCCTGTGACCACGGGAATCGACCGCGTCAAGTGTTCGACT
AGCACGGACAAATGGAGGTACTGGGCAGAGAGAACGGAACGGTTTTTACT
ATGAAGACAACAACAACAACAACAACAACAACAACAACAACAAATTATTG
CAATCGTTCATTCCCTTTCTCTTCGAAAACCAAGGTGGTGGACACCCCGG
GTATCCTTGACCATCCCTTGGAGGAGCGCAACACGATCGAGATGCAGGCC
GTGACGGCCCTGGCTCACCTCCAGTGCTGCGTGCTCTACTTCATAGACAT
CTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17600:1..3154-

>mRNA_Ecto-sp13_S_contig17600.5316.1 ID=mRNA_Ecto-sp13_S_contig17600.5316.1|Name=mRNA_Ecto-sp13_S_contig17600.5316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17600:1..3154- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGTGTACAATTTCAAGAAGATGGCGTCGGTGCCTCCGGCGGAAGA
CCTGATCGACATCATCCTTACCCGAACGCAGCGCAAAACGCCGACAGTGA
TTCACCCAGGCTACAAGATCAGTCGGATCAGGTCCTTCTACATGCGGAAG
GTCAAGTTCACGCAGGAGACGATTAGCGAGAGGCTCGGCGCTATCATCGG
GGACTTCCCGCGCCTTGACGACATCCACCCGTTTTACGCAGACCTGCTCA
ACATCCTGTACGATCGCGACCACTACAAGCTGGCGCTGGGGCAGATGAAC
ATGGCCAAGAAGCTTGTCGAAGCTTTGAGCCGCGACTACGTGCGACTCCT
GAAGTATGGGGACTCGCTCTACCGGTGCAAGCAGCTCAAGCGAGCAGCGC
TCGGCCGCATGTGCACGCTGCTCAAGAGGCAGAAGGCTTCGCTCTCGTAC
CTGGAGGAAGTGCGCCGGCACCTCGCCCGTCTCCCCGCCCTCGACCCCAA
CACGAGGACCCTCCTGCTCACCGGCTTCCCCAACGTGGGCAAGTCCAGCT
TCATGAACAAGGTCACTCGGGCGGAGGTAGACGTGCAGCCGTACGCCTTT
ACCACCAAGTCCCTCTACGTCGGACACATGGACTACCGCTATCTACGTTG
GCAGGTGGTGGACACCCCGGGTATCCTTGACCATCCCTTGGAGGAGCGCA
ACACGATCGAGATGCAGGCCGTGACGGCCCTGGCTCACCTCCAGTGCTGC
GTGCTCTACTTCATAGACATCTCC
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