prot_Ecto-sp13_S_contig176.5312.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig176.5312.1
Unique Nameprot_Ecto-sp13_S_contig176.5312.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length339
Homology
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BLAST of mRNA_Ecto-sp13_S_contig176.5312.1 vs. uniprot
Match: D8LDB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB3_ECTSI)

HSP 1 Score: 630 bits (1624), Expect = 5.090e-227
Identity = 318/338 (94.08%), Postives = 322/338 (95.27%), Query Frame = 0 
Query:    1 MINPFIRAVAVVALAKAASADASFSNVKISQFQQAGLDLSFLVSWDTADTTRENPSSGSGLIDIWLETRQTEASSMVETVLQQGVENTGSMWMDAGDSWAIRSSWDGTISGEAIVCVYDSDDLFDNACSEGLGILPEAEAPSATPGDGISNVDVPRVEQNGSSLSFSVAWGDGGGAGGFEDTAPFIDIWLVAEQSDPPAWVELVVEQNVENDMLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSFTATEETAAKAEATNRGGDGGEGGTVLALVLAGGLVFGLVAWLAITSSRRRQRRRWLGTATEAEALPEDTFIRLSDPYSGVH 338
            M NPFIR VAVVALAKAASADASFSNVKISQFQQAGLDLSFLVSWDTA+TT ENPSSGSGLIDIWLETRQTEASSMVETVLQQGVENTGSMWMDAGDSWAIRSSWDGTISGE IVCVY SDDLFDNACSEGLGILPEAEAPSAT GDGISNVDVPRVEQNGS LSFSV WGDGGGAGGFEDTAPF+DIWLVAEQSDPPAWVELVVEQNVENDMLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSF A EETAA  +ATN GGDGGEGGTVLALVLAGGLV GLVAWLAITSSRRRQRRRWLGTA EAEALPEDTF+RLSDPYSG H
Sbjct:   19 MTNPFIRGVAVVALAKAASADASFSNVKISQFQQAGLDLSFLVSWDTANTTSENPSSGSGLIDIWLETRQTEASSMVETVLQQGVENTGSMWMDAGDSWAIRSSWDGTISGEGIVCVYHSDDLFDNACSEGLGILPEAEAPSATQGDGISNVDVPRVEQNGSYLSFSVTWGDGGGAGGFEDTAPFVDIWLVAEQSDPPAWVELVVEQNVENDMLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSFAAMEETAADVDATNGGGDGGEGGTVLALVLAGGLVLGLVAWLAITSSRRRQRRRWLGTANEAEALPEDTFVRLSDPYSGFH 356
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BLAST of mRNA_Ecto-sp13_S_contig176.5312.1 vs. uniprot
Match: A0A6H5KP04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP04_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 8.690e-74
Identity = 114/126 (90.48%), Postives = 116/126 (92.06%), Query Frame = 0 
Query:  213 MLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSFTATEETAAKAEATNRGGDGGEGGTVLALVLAGGLVFGLVAWLAITSSRRRQRRRWLGTATEAEALPEDTFIRLSDPYSGVH 338
            MLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSF ATEETAA  +ATN GGDGGEGGTVLALVL GGL  GLVAWLAITSSRR+QRRRWLGTA EAEALPEDTFIRLS PYSG H
Sbjct:    1 MLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSFAATEETAADGDATNSGGDGGEGGTVLALVLVGGLFSGLVAWLAITSSRRKQRRRWLGTANEAEALPEDTFIRLSGPYSGFH 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig176.5312.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDB3_ECTSI5.090e-22794.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KP04_9PHAE8.690e-7490.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 282..301
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..281
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..15
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 302..338
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.502
NoneNo IPR availableTMHMMTMhelixcoord: 279..301

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig176contigEcto-sp13_S_contig176:1760..5084 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig176.5312.1mRNA_Ecto-sp13_S_contig176.5312.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig176 1732..5084 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig176.5312.1 ID=prot_Ecto-sp13_S_contig176.5312.1|Name=mRNA_Ecto-sp13_S_contig176.5312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=339bp
MINPFIRAVAVVALAKAASADASFSNVKISQFQQAGLDLSFLVSWDTADT
TRENPSSGSGLIDIWLETRQTEASSMVETVLQQGVENTGSMWMDAGDSWA
IRSSWDGTISGEAIVCVYDSDDLFDNACSEGLGILPEAEAPSATPGDGIS
NVDVPRVEQNGSSLSFSVAWGDGGGAGGFEDTAPFIDIWLVAEQSDPPAW
VELVVEQNVENDMLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYA
CSDFVSFTATEETAAKAEATNRGGDGGEGGTVLALVLAGGLVFGLVAWLA
ITSSRRRQRRRWLGTATEAEALPEDTFIRLSDPYSGVH*
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