mRNA_Ecto-sp13_S_contig17598.5311.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17598.5311.1
Unique NamemRNA_Ecto-sp13_S_contig17598.5311.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17598.5311.1 vs. uniprot
Match: D7FRJ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRJ8_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 9.900e-59
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 1 
Query:    1 EKARRLVDLVVTSVLLDAGAGDVWKYTEKSTGFEAGRSEGLGVASFHMFGAGAFSSDTGSNPHRADSLGLKGLADDSVRRAFQVDDDANPLVGCDGRTQV 300
            EKARRLVDLVVTSVLLDAGAGDVWKYTEKSTGFEAGRSEGLGVASFHMFGAGAFSSDTGSNPHRADSLGLKGLADDSVRRAFQVDD  NPLVGCDGRTQV
Sbjct:  106 EKARRLVDLVVTSVLLDAGAGDVWKYTEKSTGFEAGRSEGLGVASFHMFGAGAFSSDTGSNPHRADSLGLKGLADDSVRRAFQVDDGVNPLVGCDGRTQV 205
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BLAST of mRNA_Ecto-sp13_S_contig17598.5311.1 vs. uniprot
Match: A0A835ZFF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF8_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.300e-40
Identity = 75/101 (74.26%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 EKARRLVDLVVTSVLLDAGAGDVWKYTEKSTGFEAGRSEGLGVASFHMFGAGAFSSDTGSNPHRADSLGLKGLADDSVRRAFQVDDDA-NPLVGCDGRTQV 300
            E+ARRL+DLVV SVLLDAGAG+ W+YTEK T F+AGRSEGLGVASFHMF +GAFSSD  +NPHRAD++GL+ L DD+VR+AFQ  ++A NPLVGCDGRTQV
Sbjct:  103 EEARRLIDLVVVSVLLDAGAGNKWRYTEKGTNFKAGRSEGLGVASFHMFYSGAFSSDV-TNPHRADAVGLQRLPDDAVRKAFQATNEAANPLVGCDGRTQV 202
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BLAST of mRNA_Ecto-sp13_S_contig17598.5311.1 vs. uniprot
Match: A0A8K1CFN5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFN5_PYTOL)

HSP 1 Score: 121 bits (304), Expect = 8.640e-31
Identity = 61/100 (61.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 EKARRLVDLVVTSVLLDAGAGDVWKYTEKSTGFEAGRSEGLGVASFHMFGAGAFSSDTGSNPHRADSLGLKGLADDSVRRAFQVDDDANPLVGCDGRTQV 300
            EKARRL+DL + SVLLDAGAG  WK+ E  T     RSEGLG+ASFHMF  GAFSSD  ++PHR D+  L  L  D++ +AFQVDD +NPLVGC GRT +
Sbjct:   95 EKARRLIDLALVSVLLDAGAGPTWKFKEPGTEDYYSRSEGLGIASFHMFVNGAFSSDPAAHPHRVDAEALIQLRSDAIAKAFQVDDSSNPLVGCAGRTDL 194
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BLAST of mRNA_Ecto-sp13_S_contig17598.5311.1 vs. uniprot
Match: A0A484E765_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E765_BRELC)

HSP 1 Score: 117 bits (292), Expect = 4.140e-30
Identity = 60/100 (60.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    1 EKARRLVDLVVTSVLLDAGAGDVWKYTEKSTGFEAGRSEGLGVASFHMFGAGAFSSDTGSNPHRADSLGLKGLADDSVRRAFQVDDDANPLVGCDGRTQV 300
            EKARRL+DL + SVLLDAGAG  WKY E  T     RSEGLG+ASFHMF +G FS+D+   PHR D+  L  LADD++ +AFQV D  NP+VGC GRT +
Sbjct:   93 EKARRLLDLALVSVLLDAGAGPTWKYQEPGTLEYYTRSEGLGIASFHMFVSGEFSADSKEEPHRVDATALTALADDAIAKAFQVSD-TNPMVGCAGRTNL 191
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BLAST of mRNA_Ecto-sp13_S_contig17598.5311.1 vs. uniprot
Match: K3WWH7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWH7_GLOUD)

HSP 1 Score: 117 bits (292), Expect = 4.570e-29
Identity = 60/100 (60.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 EKARRLVDLVVTSVLLDAGAGDVWKYTEKSTGFEAGRSEGLGVASFHMFGAGAFSSDTGSNPHRADSLGLKGLADDSVRRAFQVDDDANPLVGCDGRTQV 300
            EKARRL+DL + SVLLDAGAG  WK+ E ST     RSEGLG+AS HMF  GAFSSD   NPHR+D+  L  L  +++ +AFQVDD+ NP+VGC GRT +
Sbjct:   95 EKARRLIDLALVSVLLDAGAGPTWKFKEPSTEDYYSRSEGLGIASLHMFLQGAFSSDL-LNPHRSDADALSNLPSNAIAKAFQVDDETNPMVGCAGRTDL 193
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BLAST of mRNA_Ecto-sp13_S_contig17598.5311.1 vs. uniprot
Match: W2QCQ7_PHYPN (Uncharacterized protein n=20 Tax=Phytophthora TaxID=4783 RepID=W2QCQ7_PHYPN)

HSP 1 Score: 117 bits (293), Expect = 5.420e-29
Identity = 61/100 (61.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:    1 EKARRLVDLVVTSVLLDAGAGDVWKYTEKSTGFEAGRSEGLGVASFHMFGAGAFSSDTGSNPHRADSLGLKGLADDSVRRAFQVDDDANPLVGCDGRTQV 300
            EKARRL+DL + SVLLDAGAG  WKY E  T     RSEGLG+ASFHMF AG FSSD  ++PHR D+  L  LAD+++ +AFQV ++ NPLVGC GRT +
Sbjct:  140 EKARRLLDLALVSVLLDAGAGPTWKYKEPGTEDFYSRSEGLGIASFHMFLAGNFSSDPENDPHRVDAAALANLADEAISKAFQVTEE-NPLVGCAGRTDL 238
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BLAST of mRNA_Ecto-sp13_S_contig17598.5311.1 vs. uniprot
Match: A0A3F2RKM4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RKM4_9STRA)

HSP 1 Score: 116 bits (290), Expect = 9.100e-29
Identity = 62/100 (62.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    1 EKARRLVDLVVTSVLLDAGAGDVWKYTEKSTGFEAGRSEGLGVASFHMFGAGAFSSDTGSNPHRADSLGLKGLADDSVRRAFQVDDDANPLVGCDGRTQV 300
            EKAR+L+DL + SVLLDAGAG  WKY E  T     RSEGLGVASFHMF  G FSSD  ++PHR D+  L  L DD++ +AFQV D ANPLVGC GRT +
Sbjct:   96 EKARKLLDLALVSVLLDAGAGPTWKYKEPGTEDFYNRSEGLGVASFHMFLQGNFSSDPVNDPHRVDAEALANLPDDAIAKAFQVSD-ANPLVGCAGRTDL 194
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BLAST of mRNA_Ecto-sp13_S_contig17598.5311.1 vs. uniprot
Match: A0A0P1ABI2_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ABI2_PLAHL)

HSP 1 Score: 117 bits (294), Expect = 1.220e-28
Identity = 62/100 (62.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 EKARRLVDLVVTSVLLDAGAGDVWKYTEKSTGFEAGRSEGLGVASFHMFGAGAFSSDTGSNPHRADSLGLKGLADDSVRRAFQVDDDANPLVGCDGRTQV 300
            EKARRL+DL + SVLLDAGAG +WKY E  T     RSEGLG+ASFHMF AG FS D    PHR D++ L  LADD +  AFQ  D ANPLVGC GRT++
Sbjct:  648 EKARRLLDLALVSVLLDAGAGPMWKYQEPGTQDFYSRSEGLGIASFHMFLAGKFSVDPKKEPHRVDAIALANLADDGIAIAFQASD-ANPLVGCAGRTEM 746
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BLAST of mRNA_Ecto-sp13_S_contig17598.5311.1 vs. uniprot
Match: A0A5D6Y127_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y127_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.430e-28
Identity = 62/100 (62.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    1 EKARRLVDLVVTSVLLDAGAGDVWKYTEKSTGFEAGRSEGLGVASFHMFGAGAFSSDTGSNPHRADSLGLKGLADDSVRRAFQVDDDANPLVGCDGRTQV 300
            EKARRL+DL + SVLLDAGAG  WKY E  T     RSEGLGVAS HMF  GAFSSD   NPH +D+  L  L  DS+ +AFQVD+  NPLVGC GRT +
Sbjct:   95 EKARRLIDLALVSVLLDAGAGPTWKYEEPGTEDTYSRSEGLGVASLHMFLQGAFSSDL-LNPHCSDADALANLPSDSIAKAFQVDEATNPLVGCAGRTDL 193
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BLAST of mRNA_Ecto-sp13_S_contig17598.5311.1 vs. uniprot
Match: A0A3R7GKP2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GKP2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.210e-28
Identity = 62/100 (62.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    1 EKARRLVDLVVTSVLLDAGAGDVWKYTEKSTGFEAGRSEGLGVASFHMFGAGAFSSDTGSNPHRADSLGLKGLADDSVRRAFQVDDDANPLVGCDGRTQV 300
            EKAR+L+DL + SVLLDAGAG  WKY E  T     RSEGLGVASFHMF  G FSSD  ++PHR D+  L  L DD++ +AFQV D ANPLVGC GRT +
Sbjct:   96 EKARKLLDLALVSVLLDAGAGPTWKYKEPGTEDFYNRSEGLGVASFHMFLQGNFSSDPVNDPHRVDAEALANLPDDAIAKAFQVSD-ANPLVGCAGRTDL 194
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17598.5311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRJ8_ECTSI9.900e-5998.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZFF8_9STRA3.300e-4074.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8K1CFN5_PYTOL8.640e-3161.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484E765_BRELC4.140e-3060.00Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
K3WWH7_GLOUD4.570e-2960.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W2QCQ7_PHYPN5.420e-2961.00Uncharacterized protein n=20 Tax=Phytophthora TaxI... [more]
A0A3F2RKM4_9STRA9.100e-2962.00Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A0P1ABI2_PLAHL1.220e-2862.00Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A5D6Y127_9STRA2.430e-2862.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3R7GKP2_9STRA4.210e-2862.00Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17598contigEcto-sp13_S_contig17598:2584..2883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score196.4
Seed ortholog evalue6.2e-48
Seed eggNOG ortholog2880.D7FRJ8
Model size300
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824
Exons1
EggNOG free text desc.Protein of unknown function (DUF1688)
EggNOG OGs28IT5@1,2QR4F@2759
Cds size300
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462914.7744157-CDS-Ecto-sp13_S_contig17598:2583..28831681462914.7744157-CDS-Ecto-sp13_S_contig17598:2583..2883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17598 2584..2883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17598.5311.1prot_Ecto-sp13_S_contig17598.5311.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17598 2584..2883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17598.5311.1

>prot_Ecto-sp13_S_contig17598.5311.1 ID=prot_Ecto-sp13_S_contig17598.5311.1|Name=mRNA_Ecto-sp13_S_contig17598.5311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
EKARRLVDLVVTSVLLDAGAGDVWKYTEKSTGFEAGRSEGLGVASFHMFG
AGAFSSDTGSNPHRADSLGLKGLADDSVRRAFQVDDDANPLVGCDGRTQV
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mRNA from alignment at Ecto-sp13_S_contig17598:2584..2883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17598.5311.1 ID=mRNA_Ecto-sp13_S_contig17598.5311.1|Name=mRNA_Ecto-sp13_S_contig17598.5311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17598:2584..2883+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAAGGCGCGGCGTCTGGTAGACCTAGTCGTCACCTCCGTGCTCCTCGA
TGCCGGCGCTGGCGACGTCTGGAAGTACACGGAAAAGTCCACGGGTTTCG
AGGCGGGCCGAAGCGAGGGGCTCGGCGTCGCCAGCTTCCACATGTTCGGG
GCCGGGGCGTTCTCGAGCGACACGGGCAGTAACCCACACCGGGCGGACTC
GTTGGGGTTGAAGGGGCTCGCAGACGATTCCGTGAGGAGGGCGTTTCAGG
TGGATGATGACGCTAACCCTCTCGTGGGCTGCGACGGAAGAACCCAGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17598:2584..2883+

>mRNA_Ecto-sp13_S_contig17598.5311.1 ID=mRNA_Ecto-sp13_S_contig17598.5311.1|Name=mRNA_Ecto-sp13_S_contig17598.5311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17598:2584..2883+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAAGGCGCGGCGTCTGGTAGACCTAGTCGTCACCTCCGTGCTCCTCGA
TGCCGGCGCTGGCGACGTCTGGAAGTACACGGAAAAGTCCACGGGTTTCG
AGGCGGGCCGAAGCGAGGGGCTCGGCGTCGCCAGCTTCCACATGTTCGGG
GCCGGGGCGTTCTCGAGCGACACGGGCAGTAACCCACACCGGGCGGACTC
GTTGGGGTTGAAGGGGCTCGCAGACGATTCCGTGAGGAGGGCGTTTCAGG
TGGATGATGACGCTAACCCTCTCGTGGGCTGCGACGGAAGAACCCAGGTC
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