mRNA_Ecto-sp13_S_contig17593.5309.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17593.5309.1
Unique NamemRNA_Ecto-sp13_S_contig17593.5309.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17593.5309.1 vs. uniprot
Match: D8LMV5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMV5_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 4.610e-120
Identity = 202/208 (97.12%), Postives = 204/208 (98.08%), Query Frame = 1 
Query:    1 MASATRKLYLVAMMICATSLRCYAFSTTTPCSSSRVADQHIMSNSPTTPRTGRGRCGSSMEMKGRNEDGQKRRISSSSSGSMNRGGFVRAAAAAALTLTVAGHRTTSPARAVGVQPGEXXXXXXXXLLLVPALRAKLAVQSVLKLMKDPEKWDEAREALKSPPLAPADFKECFRTYSDADPEQHLAFDLYRIQAQDALKAVSELLAYL 624
            MASATRKLYLVAMMICATSLRC AFSTT+ CSSSRVADQHIMSNSPTT RTGRGRCGSSMEMKGRNEDGQKRRISSSSSGS+NRGGFVRAAAAAALTLTVAGHRTTSPARAVGVQPGEXXXXXXXXLLLVPALRAKLAVQSVLKLMKDPEKW EAREALKSPPLAPADFKECFRTYSDADPEQHLAFDLYRIQAQDALKAVSELLAYL
Sbjct:    1 MASATRKLYLVAMMICATSLRCDAFSTTSSCSSSRVADQHIMSNSPTTRRTGRGRCGSSMEMKGRNEDGQKRRISSSSSGSVNRGGFVRAAAAAALTLTVAGHRTTSPARAVGVQPGEXXXXXXXXLLLVPALRAKLAVQSVLKLMKDPEKWGEAREALKSPPLAPADFKECFRTYSDADPEQHLAFDLYRIQAQDALKAVSELLAYL 208
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17593.5309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMV5_ECTSI4.610e-12097.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17593contigEcto-sp13_S_contig17593:1..3104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size624
Hectar predicted targeting categorychloroplast
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_003770.1
Cds size624
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462914.6466436-CDS-Ecto-sp13_S_contig17593:0..271681462914.6466436-CDS-Ecto-sp13_S_contig17593:0..27Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17593 1..27 -
1681462914.6572263-CDS-Ecto-sp13_S_contig17593:1574..17631681462914.6572263-CDS-Ecto-sp13_S_contig17593:1574..1763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17593 1575..1763 -
1681462914.6669478-CDS-Ecto-sp13_S_contig17593:2696..31041681462914.6669478-CDS-Ecto-sp13_S_contig17593:2696..3104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17593 2697..3104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17593.5309.1prot_Ecto-sp13_S_contig17593.5309.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17593 1..3104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17593.5309.1

>prot_Ecto-sp13_S_contig17593.5309.1 ID=prot_Ecto-sp13_S_contig17593.5309.1|Name=mRNA_Ecto-sp13_S_contig17593.5309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
MASATRKLYLVAMMICATSLRCYAFSTTTPCSSSRVADQHIMSNSPTTPR
TGRGRCGSSMEMKGRNEDGQKRRISSSSSGSMNRGGFVRAAAAAALTLTV
AGHRTTSPARAVGVQPGERTTAPPNALLLVPALRAKLAVQSVLKLMKDPE
KWDEAREALKSPPLAPADFKECFRTYSDADPEQHLAFDLYRIQAQDALKA
VSELLAYL
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mRNA from alignment at Ecto-sp13_S_contig17593:1..3104-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17593.5309.1 ID=mRNA_Ecto-sp13_S_contig17593.5309.1|Name=mRNA_Ecto-sp13_S_contig17593.5309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3104bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17593:1..3104- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCATCCGCTACTAGAAAACTTTATCTGGTAGCGATGATGATCTGTGC
GACGTCGCTGCGGTGTTACGCGTTCTCTACAACAACCCCGTGCAGCAGTA
GCAGAGTCGCCGATCAGCACATCATGTCGAACAGCCCTACGACTCCGAGG
ACGGGCCGAGGGCGCTGTGGAAGCTCAATGGAGATGAAGGGAAGGAACGA
AGACGGACAGAAACGAAGAATAAGCAGCAGTAGCAGTGGCAGCATGAACC
GGGGTGGCTTCGTGCGAGCTGCAGCAGCGGCAGCGCTCACTCTTACCGTT
GCCGGGCACCGAACGACGTCTCCCGCACGGGCCGTTGGCGTTCAGCCCGG
AGAGAGAACGACCGCTCCTCCCAACGCGTTGCTCCTTGTTCCTGCTCTTC
GCGCGAAGGTGTGTGGACTAAAGAGTTATTTAGCTGTTGCGAGGGAGCAG
ATCAGTAGCAAGAATGCAAAGGTATCGCTGGAACCTGCGAAACACATGTT
TCTGACTAGGCAAACTCTGCAACGTACTTGACGGCGGTCCACTGGCTGGT
GTCTACTGTTCTCTGCCGGTTGTAGATACTGCGTTTCGCGCATCGAGAGT
GCATTCCACTAGCACTTTACACAGCACCGTCGTGATTCCAGCAGTCCCTT
GTAAGAACCATGAATTCATCTCCATAAACCTACTTTACCTTAGAGAAGCA
CGACACACTTCACCGACAAATACGACGAGGTGCCGAAGAGGGACATGCGT
AGAGTCCTCACATTGACGAGATTGTTCCGGCCGGCGTCGTGTCCTTCACT
ACGTGGACGTTCCTACCCACCCTTTGAGTCCCGTTTTCGGTGCATCCTCG
ATCTGAAACCTCAACTTGGTCTGCGGGAGTGCTGGTGATATATGTCGTGG
TGAAATGACCGAGACTGGAAACCCGCGACTGAACGCGTTTTCCCTGATTT
CTGCATCCTCTGGGGTGCACCCTGGCACTTCGTCGTTGTTATTCAAGATG
CTGGTTGATTCTATTTGGGTGTAGCGCACGAACTTAGGAGTTTTGATAAA
CCTATCAACCCGAGACAGCTGCCCCCCGCGTGCTCTCCTCCCTCGTTCAA
CCTTCCCGCGGGACTGCCCACGCAAAGCAAGTTTATTACGAAGAAAAAAG
ACCACAGAGGGGGCACGCAGACCCTTACAACTTAACCCTAACCCCAGCTT
ACCCGGTTTTATATTTTATCCAGTATGTTTGATTGCTTCGATTAGCCTGC
GTAGACAACCGCTTCCACCTGTGGACCGACCACCCCGTGCGACGCCTTTC
GGATATGACGCTCGCGCTTATCTACAAACAACGTTTTCCAGCTCGCGGTC
CAGAGCGTGCTGAAGCTGATGAAGGACCCAGAGAAGTGGGACGAGGCTCG
GGAGGCCCTCAAATCGCCCCCGCTAGCTCCGGCCGACTTCAAGGAGTGCT
TCCGGACGTATAGCGACGCGGATCCCGAGCAGCACTTGGCGTTCGACCTC
TACCGCATACAGGCGCAAGACGCCCTCAAGGTGAATGATGACGTAGCTTC
TACACGATGTACGGCAGCCTTTCCTGTCAGCGCAACCCGTTGGCAATAAA
GTAGGCGCGGGGGCTAATTAACCCAGGCGCGGAAGGAATGCCCCTACTAT
ATTTTGGTTTTTGTCCCGTGTGCGATTCTCCTGAGAAAAATACAAATGTC
GAGCAAGCGCTAGATTAATCCTCTTGTCCCATAGAGCCAAGTGTCTACGA
GCGAAGAGAGCCACACCCGTGAACAAAGCGATTTCCTCGAGAGGGGGGAA
TATATCGCATTGCCTGCGCATGAACTGCCTTTGAGTACATGCAGGTCTAT
CCGCACTGTGACCGCCCACTGCACCACGCCCGCAACCCCGTTGAGTGCCT
GCGTGCAAAGCGAGTCGACCCGCACTGGGACCGCATACTACAACACGCCC
GAAATACCGATAAGTTCCTCCGAGCGAAGCGAGTCGACCCGCACTTTGAC
CGCACACTGCACCACGCCCGAAATAAAGTTCAAGTGCATTCGAGCGAAGC
CAGTTAAAATGCCACAGTCGCATTCACTCCACGCCCATTGCATCAACAAC
ACACCAAGTCAGTCTATGCGCTTGTTGTCGCGCTGACAGCTTGAACCGCA
CATTTGCAATCGCTTCGTGTCTGCAAACGAATTACAGCCGCTCGATGAAT
AGGAAACACGCGATCAGCCCTCCACGTACTACAGCTGTCACGACGACTAA
GCAACCTCTTGATCCACTGGTTGAATGCCGCCGTTCTTGTAGGCATAGGT
GGTTCTGAAATCTGACGCAACGACGCCAGCAGGTGGCGCGCGTTACGTAC
GTACTTCATCCTTGCTCGGTCATGTAGAGCACCTGTTTTCGGCGTACGCT
TTACAACACTCACTCGCGCGAAGAATATGACTGTTTGGATTATGGTGGCG
GAATGCAGACGTCCTCAGCTGCTCATTAGTGGCAGAAAACAGTTTGAGAC
TGCGAGTGAGTGTCGAAAAGCGCACACCGCACGACAACAGCTAGCTGCTC
TTTTTGAATGGGCAACGGATGTTCCTACGTAACGCCCTCCGCGCTGCTGG
CGTCGTCGCGTGTACTTAGAGGTCGTTTGCGCCGGACTTAGGAATCGGGC
AATATAAAAACGAATCGGTGTTGTTGTTATAGAATTTTGGGCCGTCGAAA
AGCACCGTCTGGCGTGCATCGCCGAACTCCTCGGCCCCGGCCAGCAAAAA
TCGTTTCTGCTGATGTTGCGCACGATGAGCATCTTTGTGTCGCACTGCGC
CACAACAACATGGAATGGTTCTTTGCATGCAGTTGCTGAAATACAGCCTA
GCCGCCGTGACCGAGGCCCGTGCCGCAACTCACAGGCGTTTTGTTGACCT
ACTTAACGGGCGCATCGCTCCCTCTGTGGACTCCAAAGCGTTGGAGGGGA
AGAGAAGACAAATTTGCAGCTCCTGGTTCGCCCTTTTCTTAGTTTTGTCT
TTGTAACGTTGTTCTTTCGTTTATTGGCAACAACGAAACACGCGTTGGTT
CCTTGCGACATAACACCCCCACCCCAGGCGGTCTCCGAGCTGCTGGCGTA
CCTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17593:1..3104-

>mRNA_Ecto-sp13_S_contig17593.5309.1 ID=mRNA_Ecto-sp13_S_contig17593.5309.1|Name=mRNA_Ecto-sp13_S_contig17593.5309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17593:1..3104- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCATCCGCTACTAGAAAACTTTATCTGGTAGCGATGATGATCTGTGC
GACGTCGCTGCGGTGTTACGCGTTCTCTACAACAACCCCGTGCAGCAGTA
GCAGAGTCGCCGATCAGCACATCATGTCGAACAGCCCTACGACTCCGAGG
ACGGGCCGAGGGCGCTGTGGAAGCTCAATGGAGATGAAGGGAAGGAACGA
AGACGGACAGAAACGAAGAATAAGCAGCAGTAGCAGTGGCAGCATGAACC
GGGGTGGCTTCGTGCGAGCTGCAGCAGCGGCAGCGCTCACTCTTACCGTT
GCCGGGCACCGAACGACGTCTCCCGCACGGGCCGTTGGCGTTCAGCCCGG
AGAGAGAACGACCGCTCCTCCCAACGCGTTGCTCCTTGTTCCTGCTCTTC
GCGCGAAGCTCGCGGTCCAGAGCGTGCTGAAGCTGATGAAGGACCCAGAG
AAGTGGGACGAGGCTCGGGAGGCCCTCAAATCGCCCCCGCTAGCTCCGGC
CGACTTCAAGGAGTGCTTCCGGACGTATAGCGACGCGGATCCCGAGCAGC
ACTTGGCGTTCGACCTCTACCGCATACAGGCGCAAGACGCCCTCAAGGCG
GTCTCCGAGCTGCTGGCGTACCTA
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