mRNA_Ecto-sp13_S_contig17592.5308.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17592.5308.1 vs. uniprot
Match: A0A6H5KID0_9PHAE (Beta_elim_lyase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KID0_9PHAE) HSP 1 Score: 660 bits (1702), Expect = 7.950e-228 Identity = 439/475 (92.42%), Postives = 445/475 (93.68%), Query Frame = 1
Query: 1 QVSGPDIQRTVSMMKEVLEEAGLNPLGVSRTPRYNAEDELEWHSPDDVEAAAXXXXXXXXXXDPTASPDQLGGTANGIVDGDEVVIVSEISNAVSGDAGPDSRGFPDSSFADAKTVVSPEMGSDGAATAELSTSAAAGXXXXXXXXAEAGLEAGGGADGLGEEGAGEKDKDELPPFVEKFEEVELQGMAVSTEGFVAIMTSKESTRALRLVVTPDDPMSGGLDVEQAETSEARTLLQLMQGIDVARHLPHDALGNLMDLSMRTGVQLSTVYVSHISPFSATLMAKVPQRDGETAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GVPETPVSPSVPGTTMGSGFGRPRLGLSKIAETTNAFEALGLALRYPSSRIFVRAELLAPTAEGGEAMGRKDSSSASSFESGDLAELYPNLMKLTDAKERRSASERMDSQFEMQKIRQQLESAV 1422
QVSGPDIQRTVSMMKEVLEEAGLNPL VSRTPRYNAEDELEWHSP++VEAAA XXXXXXXXX ASPDQLGGT NGIVDGDE VIVSEISNAVSGDAGPDSRGFPDSSF D KTVVSPEMGS A TAELSTS AAG AEAGLEAGGGADG+GEEGA + D DELPPFVEKFEEVELQGMAVSTEGFVAIMTSKESTRALRLVVTPDDPMSGGLDVEQAET EARTLLQLMQGIDVARHLPHDALGNLMDLSMRTGVQLSTVYVSHISPFSATLMAKVPQRDGETAAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GVPETPVSPSVPGTTMGSGF RPRLGLSKIAETTN+FEALGLALRYPSSRIFVRAELLAP AEGGEAMGRKDSSSASSFES DLAELYPNLMKLTDAKERRSASERMDSQFEMQKIRQQLESA+
Sbjct: 427 QVSGPDIQRTVSMMKEVLEEAGLNPLVVSRTPRYNAEDELEWHSPENVEAAAAXXXXXXXXXXXAASPDQLGGTVNGIVDGDEAVIVSEISNAVSGDAGPDSRGFPDSSFTDVKTVVSPEMGSGSATTAELSTSTAAGAEGAGGGSAEAGLEAGGGADGVGEEGAEDDDNDELPPFVEKFEEVELQGMAVSTEGFVAIMTSKESTRALRLVVTPDDPMSGGLDVEQAETPEARTLLQLMQGIDVARHLPHDALGNLMDLSMRTGVQLSTVYVSHISPFSATLMAKVPQRDGETAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPETPVSPSVPGTTMGSGFSRPRLGLSKIAETTNSFEALGLALRYPSSRIFVRAELLAPPAEGGEAMGRKDSSSASSFESRDLAELYPNLMKLTDAKERRSASERMDSQFEMQKIRQQLESAM 901
BLAST of mRNA_Ecto-sp13_S_contig17592.5308.1 vs. uniprot
Match: K8Z7D4_NANGC (Threonine aldolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z7D4_NANGC) HSP 1 Score: 84.7 bits (208), Expect = 3.210e-14 Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 1
Query: 544 EVELQGMAVSTEGFVAIMTSKEST-----------RALRLVVTPDDPMSGGLDVEQAETSEARTLLQLMQGIDVARHLPHDALGNLMDLSMRTGVQLSTVYVSHISP------------FSATLMAKVPQRDGETAAA 888
+V +QG++ S GFV ++ KE +AL++VVTP DPMS GLDV AET EA TLLQL+Q IDV +L HDAL +L+ + V L V + +S F A L +V +G +++A
Sbjct: 81 DVVVQGVSTSERGFVVVLAEKEGEGQEGSEGGRPRKALKVVVTPSDPMSAGLDVHAAETPEAITLLQLLQDIDVGSYLKHDALSSLVGVRAGHPVSLKRVVIEQLSAGRGVGGNNSNKRFKARLEVEVGDMEGASSSA 218
BLAST of mRNA_Ecto-sp13_S_contig17592.5308.1 vs. uniprot
Match: A0A4D9CZ25_9STRA (Beta_elim_lyase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ25_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 5.350e-14 Identity = 58/159 (36.48%), Postives = 80/159 (50.31%), Query Frame = 1
Query: 481 GEEGAGEKDKDELPPFVEKFEEVELQGMAVSTEGFVAIMTSKEST-----------RALRLVVTPDDPMSGGLDVEQAETSEARTLLQLMQGIDVARHLPHDALGNLMDLSMRTGVQLSTVYVSHISP------------FSATLMAKVPQRDGETAAA 888
G GAG + E +V +QG++ S GFV ++ KE +AL++VVTP DPMS GLDV AET EA TLLQL+Q IDV +L HDAL +L+ + V L V + +S F A L +V +G +++A
Sbjct: 524 GPTGAGSAAAGPVSQAEETLVDVVVQGVSTSARGFVVVLAEKEGEGQEGSEGGSPRKALKVVVTPSDPMSAGLDVHAAETPEAITLLQLLQDIDVGSYLKHDALSSLVGVRAGHPVSLKRVVIEQLSAGRGAGGNNSNKRFKARLEVEVGDMEGASSSA 682
BLAST of mRNA_Ecto-sp13_S_contig17592.5308.1 vs. uniprot
Match: A0A482SPV4_9ARCH (Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPV4_9ARCH) HSP 1 Score: 72.0 bits (175), Expect = 1.200e-9 Identity = 47/121 (38.84%), Postives = 68/121 (56.20%), Query Frame = 1
Query: 541 EEVELQGMAVSTEGFVAIMTSKESTRALRLVVTPDDPMSGGLDVEQAETSEARTLLQLMQGIDVARHLPHDALGNLMDLSMRTGVQLSTVYVSHISP----FSATLMAKVPQRDGETAAAE 891
EE ++ GM+VS +GF + R +++ VTP DPM GLD +QAE+SEA TLLQL+QGIDV LP AL + + + +L V V + F A L+A+ ++D A +
Sbjct: 451 EETQVFGMSVSDQGFCVFLQGLICDRFVKVQVTPSDPMVYGLDRDQAESSEAVTLLQLLQGIDVESFLPKGALSSRFN-DGKLKYKLMRVVVDDLQDNGAGFRAKLIAQARKQDNSQEALD 570 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17592.5308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17592.5308.1 >prot_Ecto-sp13_S_contig17592.5308.1 ID=prot_Ecto-sp13_S_contig17592.5308.1|Name=mRNA_Ecto-sp13_S_contig17592.5308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=482bp QVSGPDIQRTVSMMKEVLEEAGLNPLGVSRTPRYNAEDELEWHSPDDVEAback to top mRNA from alignment at Ecto-sp13_S_contig17592:87..2845+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17592.5308.1 ID=mRNA_Ecto-sp13_S_contig17592.5308.1|Name=mRNA_Ecto-sp13_S_contig17592.5308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2759bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17592:87..2845+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17592:87..2845+ >mRNA_Ecto-sp13_S_contig17592.5308.1 ID=mRNA_Ecto-sp13_S_contig17592.5308.1|Name=mRNA_Ecto-sp13_S_contig17592.5308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1446bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17592:87..2845+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |