mRNA_Ecto-sp13_S_contig1759.5307.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1759.5307.1
Unique NamemRNA_Ecto-sp13_S_contig1759.5307.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1759.5307.1 vs. uniprot
Match: D7FXG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG3_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 8.710e-53
Identity = 136/165 (82.42%), Postives = 138/165 (83.64%), Query Frame = 1 
Query:    1 MRQRHEQPVYGSGSRRSSSPGXXXXXXXXXXXXXXXXXXXXXXXXXXX-------SSTIFGSNVSGHSSYSGFSAMSSIHAFGGSELGNSSSXXXXXXXXXXXXXXXXXNNQ-ATWRTPPLGSQKGDPGDKSGNPPAHGSTGGALGWGSIMGSGGATRGTGEGPD 471
            MRQRHEQPVYGSGSRRS    XXXXXXXXXXXXXXXXXXXXXXXXXXX       SSTIFGSNVSGHSSYSGFSAMSS+HAFGGSELGNSS              XXXXNN  ATWRTPPLGSQKGDPGD+SGNPPAHGSTGGALGWGSIMGSGGATRGTGEGPD
Sbjct:    1 MRQRHEQPVYGSGSRRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTIFGSNVSGHSSYSGFSAMSSMHAFGGSELGNSSGGGGMAGVNAAADGXXXXNNNPATWRTPPLGSQKGDPGDESGNPPAHGSTGGALGWGSIMGSGGATRGTGEGPD 165
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BLAST of mRNA_Ecto-sp13_S_contig1759.5307.1 vs. uniprot
Match: A0A6H5L3L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L2_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 2.730e-52
Identity = 120/157 (76.43%), Postives = 122/157 (77.71%), Query Frame = 1 
Query:    1 MRQRHEQPVYGSGSRRSSSPGXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTIFGSNVSGHSSYSGFSAMSSIHAFGGSELGNSSSXXXXXXXXXXXXXXXXXNNQATWRTPPLGSQKGDPGDKSGNPPAHGSTGGALGWGSIMGSGGATRGTGEGPD 471
            MRQRHEQPVYGS SRRSSSPG             XXXXXXXXXXX   SSTIFGSNVSGHSSYSGFSAMSS+HAFGGSELGNSSS                 NN ATWRTPPLGSQKGDPGD+SGNPPAHGSTGGALGWGSIMGSGGATRGTGEGPD
Sbjct: 1568 MRQRHEQPVYGSCSRRSSSPGDASVPGGRTFSSAXXXXXXXXXXXPDDSSTIFGSNVSGHSSYSGFSAMSSMHAFGGSELGNSSSGGMAGGNAPADGSSSG-NNLATWRTPPLGSQKGDPGDESGNPPAHGSTGGALGWGSIMGSGGATRGTGEGPD 1723
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1759.5307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXG3_ECTSI8.710e-5382.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3L2_9PHAE2.730e-5276.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1759contigEcto-sp13_S_contig1759:13619..14092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size474
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003120.1
Cds size474
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462914.55478-CDS-Ecto-sp13_S_contig1759:13618..140921681462914.55478-CDS-Ecto-sp13_S_contig1759:13618..14092Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1759 13619..14092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1759.5307.1prot_Ecto-sp13_S_contig1759.5307.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1759 13619..14092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1759.5307.1

>prot_Ecto-sp13_S_contig1759.5307.1 ID=prot_Ecto-sp13_S_contig1759.5307.1|Name=mRNA_Ecto-sp13_S_contig1759.5307.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
MRQRHEQPVYGSGSRRSSSPGGASVPGGPTFSSAGGGASSSLANNPDDSS
TIFGSNVSGHSSYSGFSAMSSIHAFGGSELGNSSSGGMAGGNAAADGSSS
GNNNQATWRTPPLGSQKGDPGDKSGNPPAHGSTGGALGWGSIMGSGGATR
GTGEGPD*
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mRNA from alignment at Ecto-sp13_S_contig1759:13619..14092-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1759.5307.1 ID=mRNA_Ecto-sp13_S_contig1759.5307.1|Name=mRNA_Ecto-sp13_S_contig1759.5307.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1759:13619..14092- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCAGCGGCACGAGCAGCCGGTGTACGGCAGCGGCAGCCGGCGCTC
GTCTTCCCCGGGGGGCGCTTCGGTGCCGGGAGGGCCCACCTTTTCTTCGG
CCGGCGGCGGGGCGTCATCATCCCTGGCGAACAACCCGGACGACTCATCC
ACGATCTTTGGGTCGAACGTGTCCGGCCACTCGTCCTACTCGGGCTTCTC
CGCGATGTCCTCGATACACGCGTTCGGGGGAAGTGAGCTGGGCAACAGCA
GCAGCGGCGGCATGGCGGGGGGCAACGCGGCCGCCGACGGAAGCAGCAGC
GGCAACAACAACCAGGCGACGTGGCGGACACCTCCCTTGGGGTCCCAGAA
GGGAGACCCTGGCGATAAGTCCGGAAACCCTCCGGCGCATGGCTCGACCG
GGGGGGCGTTGGGGTGGGGGAGTATCATGGGCAGCGGCGGGGCAACGCGG
GGTACGGGAGAAGGGCCGGATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1759:13619..14092-

>mRNA_Ecto-sp13_S_contig1759.5307.1 ID=mRNA_Ecto-sp13_S_contig1759.5307.1|Name=mRNA_Ecto-sp13_S_contig1759.5307.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1759:13619..14092- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCAGCGGCACGAGCAGCCGGTGTACGGCAGCGGCAGCCGGCGCTC
GTCTTCCCCGGGGGGCGCTTCGGTGCCGGGAGGGCCCACCTTTTCTTCGG
CCGGCGGCGGGGCGTCATCATCCCTGGCGAACAACCCGGACGACTCATCC
ACGATCTTTGGGTCGAACGTGTCCGGCCACTCGTCCTACTCGGGCTTCTC
CGCGATGTCCTCGATACACGCGTTCGGGGGAAGTGAGCTGGGCAACAGCA
GCAGCGGCGGCATGGCGGGGGGCAACGCGGCCGCCGACGGAAGCAGCAGC
GGCAACAACAACCAGGCGACGTGGCGGACACCTCCCTTGGGGTCCCAGAA
GGGAGACCCTGGCGATAAGTCCGGAAACCCTCCGGCGCATGGCTCGACCG
GGGGGGCGTTGGGGTGGGGGAGTATCATGGGCAGCGGCGGGGCAACGCGG
GGTACGGGAGAAGGGCCGGATTGA
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