mRNA_Ecto-sp13_S_contig1759.5306.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1759.5306.1
Unique NamemRNA_Ecto-sp13_S_contig1759.5306.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1759.5306.1 vs. uniprot
Match: A0A6H5L6Q5_9PHAE (SREBP regulating gene protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Q5_9PHAE)

HSP 1 Score: 525 bits (1353), Expect = 1.350e-174
Identity = 430/550 (78.18%), Postives = 438/550 (79.64%), Query Frame = 2 
Query:  107 MDATPRFRLFDNRRGS-NQMDEEAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAACGAGVLASARLLARASLSYSSWPSSSSLPGYLHSSGAGXXXXXXXXXXXXXXXXXXXXXX--RRPAVSLGPDAIPSVLLVGRGPSGLPSGQALPGGARKASSLVDATGAVLGXXXXXETRRGGV-RENSSDPYRCRNTVQGATLVADSEGRVCHRAELVVEGDDDDNVRHRPGCCAPRPPALPLLPLRGXXXXXXXXXXXXXXXXXX-KHKHPPAAPRSVSMTTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXGV-------PPEEALSTPFSCWSCDVGEDGLSGNXXXXXXXXXXXXXXISYEFCVSCCQNPQRGKEREAIQASAALSGHPAYRHLLGPGNNDAANKRGPPXXXXXXXXXXXXEAGVGKSQQEEAEERGARELAFTHCAFRCRTYSGSVAHENSYRSPLKHCFGRFRPPAASAAAAALPGGWGRVVEGGESRGAPPLQLDPLLLELADP 1720
            MDATPRFRLFDNRRGS NQMDEEAGQ       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAACGAGVLASARLLARASLSYSSWPSSSSLPGYLHSSGAG   XXXXXXXXXXXXXXXXXXX  RRPAVSLGPDAIPSVLLV RGPSGLPSG ALPGGARKASSLVD TGAVLG        RGG  RENSS+PYRCRNTVQGATLVADSEGRVCHRAEL+VE  DD  VRHRPG                XXXXXXXXXXXXXXXXXX KHKHPPAAP S   TTR                        XXXX         PPEEALSTPFSCWSCDVGEDG SGNXXXXXXXXXXXXXX SYEFCVSCCQNPQRGKEREAIQASAALSGHPAYR LLGPGNNDA+N+R  P            EAGV KSQ EEAEER ARE+AF HCAFRCRTYSGSV HENSYRSPLKHCFGRFRPPAASAAAAALPGG   VVEG ESRGAPP Q+DPLL +LA+P
Sbjct:    1 MDATPRFRLFDNRRGSSNQMDEEAGQATATLPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAACGAGVLASARLLARASLSYSSWPSSSSLPGYLHSSGAGSTDXXXXXXXXXXXXXXXXXXXXXRRPAVSLGPDAIPSVLLVERGPSGLPSGPALPGGARKASSLVDVTGAVLGDGGGGGEIRGGEGRENSSNPYRCRNTVQGATLVADSEGRVCHRAELIVEEGDDXXVRHRPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKHKHPPAAPHSGPATTRTETRRGVEGGVSVELVELGELAHGXXXXXXXXXXXXFPPEEALSTPFSCWSCDVGEDGPSGNXXXXXXXXXXXXXXSSYEFCVSCCQNPQRGKEREAIQASAALSGHPAYRDLLGPGNNDASNRRELPPPRQLQASHAAAEAGVEKSQ-EEAEERDAREMAFAHCAFRCRTYSGSVVHENSYRSPLKHCFGRFRPPAASAAAAALPGGRAGVVEGRESRGAPPHQVDPLLFDLAEP 549
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BLAST of mRNA_Ecto-sp13_S_contig1759.5306.1 vs. uniprot
Match: D7FXG4_ECTSI (SREBP regulating gene protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG4_ECTSI)

HSP 1 Score: 454 bits (1169), Expect = 4.620e-147
Identity = 428/552 (77.54%), Postives = 435/552 (78.80%), Query Frame = 2 
Query:  107 MDATPRFRLFDNRRGS--NQMDEEAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAA---CGAGVLASARLLARASLSYSSWPSSSSLPGYLHSSGAGXXXXXXXXXXXXXXXXXXXXXXRRPAVSLGPDAIPSVLLVGRGPSGLPSGQALPGGARKASSLVDATGAVLGXXXXXETRRGGVRENSSDPYRCRNTVQGATLVADSEGRVCHRAELVVEGDDDDNVRHRPGCCAPRPPALPLLPLRGXXXXXXXXXXXXXXXXXXKHKHPPAAPRSVSMTTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPP-------EEALSTPFSCWSCDVGEDGLSGNXXXXXXXXXXXXXXISYEFCVSCCQNPQRGKEREAIQASAALSGHPAYRHLLGPGNNDAANKRGPPXXXXXXXXXXXXEAG-VGKS-QQEEAEERGARELAFTHCAFRCRTYSGSVAHENSYRSPLKHCFGRFRPPAASAAAAALPGGWGRVVEGGESRGAPPLQLDPLLLELADP 1720
            MDATPRFRLFDNRRGS  NQMDEEAG+        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      CGAGVLASARLLARAS S+SSWPSSSS PGYLHSSGAGXXXXXXXXXXXXXXXXXXXXX RRPAVSLGPDAIPSVLLV RGPSGLPSG ALPGGARKASSLVD  GAV G     ETR G  RENSS+PYRCRNTVQGATLVADSEGRVCHRAELVVE  D                         XXXXXXXXXXXXXXXXXX                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX           EEALSTPFSCWSCDVGEDG SG+               SYEFCVSCCQNPQRG+EREAIQASAALSGHPAYR LLG GNNDAAN R P XXXXXXXXXXXXEAG V K+ QQ EAEER ARELAF HCAFRCRTYSGSVAHENSYRSPLKHCFGRFRPPAASAAAAALPGGWG VVEGGESRGAPPLQLDPLL  LA+P
Sbjct:    1 MDATPRFRLFDNRRGSSINQMDEEAGRQTATTLPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGAGVLASARLLARASSSHSSWPSSSSAPGYLHSSGAGXXXXXXXXXXXXXXXXXXXXX-RRPAVSLGPDAIPSVLLVERGPSGLPSGPALPGGARKASSLVDPAGAVPGGGGG-ETRGGRGRENSSNPYRCRNTVQGATLVADSEGRVCHRAELVVEEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEALSTPFSCWSCDVGEDGPSGSNGGGNDSPSFSSCCSSYEFCVSCCQNPQRGEEREAIQASAALSGHPAYRDLLGSGNNDAANGREPXXXXXXXXXXXXXEAGGVEKNGQQVEAEERDARELAFAHCAFRCRTYSGSVAHENSYRSPLKHCFGRFRPPAASAAAAALPGGWGGVVEGGESRGAPPLQLDPLLFALAEP 550
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1759.5306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6Q5_9PHAE1.350e-17478.18SREBP regulating gene protein n=1 Tax=Ectocarpus s... [more]
D7FXG4_ECTSI4.620e-14777.54SREBP regulating gene protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1759contigEcto-sp13_S_contig1759:5191..7850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2660
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionUncharacterised protein family UPF0454
Ec32 orthologEc-07_003140.1
Cds size1617
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462914.5010312-UTR-Ecto-sp13_S_contig1759:5190..52961681462914.5010312-UTR-Ecto-sp13_S_contig1759:5190..5296Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1759 5191..5296 +
1681462914.5247324-UTR-Ecto-sp13_S_contig1759:6913..78501681462914.5247324-UTR-Ecto-sp13_S_contig1759:6913..7850Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1759 6914..7850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462914.5118127-CDS-Ecto-sp13_S_contig1759:5296..69131681462914.5118127-CDS-Ecto-sp13_S_contig1759:5296..6913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1759 5297..6913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1759.5306.1prot_Ecto-sp13_S_contig1759.5306.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1759 5297..6913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1759.5306.1

>prot_Ecto-sp13_S_contig1759.5306.1 ID=prot_Ecto-sp13_S_contig1759.5306.1|Name=mRNA_Ecto-sp13_S_contig1759.5306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=539bp
MDATPRFRLFDNRRGSNQMDEEAGQTTTTLPRRRMLTSSVAVARQRRRNR
RRPGARRGLAALVPRLLASSISRARRRRALLLLLVLAACGAGVLASARLL
ARASLSYSSWPSSSSLPGYLHSSGAGSADRDDDDNDDDDNDAAHRHKHRR
PAVSLGPDAIPSVLLVGRGPSGLPSGQALPGGARKASSLVDATGAVLGGG
GGGETRRGGVRENSSDPYRCRNTVQGATLVADSEGRVCHRAELVVEGDDD
DNVRHRPGCCAPRPPALPLLPLRGGGGGSGDLASSSPPAADDKHKHPPAA
PRSVSMTTRTETRRRGEGGAGVELVALANGGGGGGAGGVPPEEALSTPFS
CWSCDVGEDGLSGNNGGGNGSSSSSSCCISYEFCVSCCQNPQRGKEREAI
QASAALSGHPAYRHLLGPGNNDAANKRGPPPPRQLRASAAAAEAGVGKSQ
QEEAEERGARELAFTHCAFRCRTYSGSVAHENSYRSPLKHCFGRFRPPAA
SAAAAALPGGWGRVVEGGESRGAPPLQLDPLLLELADP*
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mRNA from alignment at Ecto-sp13_S_contig1759:5191..7850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1759.5306.1 ID=mRNA_Ecto-sp13_S_contig1759.5306.1|Name=mRNA_Ecto-sp13_S_contig1759.5306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1759:5191..7850+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCCGGAGCATTAGCGAGAGTGTCGTCCGCTGCTATCATACTACTTTCC
TCCTCCAGTTGCGGCTGACACGGTTGTTCGGAGGGCTTGGTCGCCCGTTT
TTCGCGATGGACGCTACCCCTCGTTTCCGGCTGTTCGACAACCGCCGGGG
GAGCAATCAGATGGACGAAGAAGCAGGTCAGACGACGACGACCCTGCCCC
GCCGGCGCATGCTTACCTCCTCCGTCGCCGTCGCGAGGCAGCGAAGGCGG
AACCGGAGGAGGCCCGGCGCCCGCCGAGGCCTAGCGGCTCTCGTCCCGCG
ACTGCTGGCTTCTTCCATCTCGAGAGCACGCCGGCGCCGAGCGCTGCTGC
TCCTGCTGGTGCTCGCGGCGTGCGGCGCCGGGGTGCTTGCGAGCGCTAGG
CTGCTGGCCCGGGCGTCGTTGTCGTATTCATCGTGGCCGTCCTCGTCGTC
CCTGCCAGGATACTTGCATTCATCTGGCGCAGGCTCCGCTGATAGAGACG
ACGACGACAATGATGACGATGACAATGATGCTGCCCATCGCCATAAGCAC
CGACGCCCAGCCGTGAGTCTCGGCCCAGACGCGATCCCTTCCGTGCTATT
AGTCGGGCGAGGGCCGTCAGGCTTGCCGTCTGGCCAGGCGCTGCCCGGCG
GCGCGCGGAAAGCGAGCAGCCTTGTTGATGCGACGGGGGCCGTGCTAGGT
GGCGGCGGCGGGGGCGAGACACGGAGAGGGGGGGTGCGAGAGAACAGTAG
TGATCCCTACCGGTGTCGAAACACCGTTCAAGGGGCTACGCTCGTGGCAG
ACTCGGAAGGGAGGGTGTGTCACCGTGCGGAGCTAGTGGTAGAGGGAGAC
GACGATGATAATGTCCGCCACCGCCCGGGGTGTTGCGCCCCGCGCCCGCC
AGCGCTGCCGCTGCTGCCGCTGCGCGGCGGCGGCGGCGGCAGCGGTGATC
TCGCCTCCAGTTCGCCTCCAGCGGCTGACGACAAACACAAGCATCCTCCC
GCGGCGCCACGTTCCGTCTCGATGACGACAAGAACAGAGACCCGCCGCAG
GGGAGAGGGAGGCGCGGGCGTGGAGCTGGTGGCTCTGGCGAACGGCGGCG
GCGGCGGGGGGGCGGGGGGGGTTCCACCGGAAGAGGCCCTGTCGACGCCA
TTCTCGTGCTGGAGCTGCGACGTGGGAGAAGACGGCCTCTCCGGGAACAA
CGGCGGCGGCAACGGCAGCTCTTCTTCCTCGTCGTGCTGCATCTCGTACG
AGTTTTGCGTGTCGTGCTGCCAGAACCCCCAGCGGGGAAAGGAGCGGGAG
GCCATCCAGGCGTCAGCCGCACTTTCGGGACACCCGGCCTATCGCCACCT
CCTAGGGCCCGGTAACAACGACGCGGCAAACAAGAGAGGACCGCCGCCCC
CGCGTCAACTCCGGGCTTCGGCTGCGGCAGCGGAAGCAGGAGTTGGAAAA
AGCCAACAAGAGGAAGCGGAGGAACGCGGCGCGCGAGAATTGGCCTTCAC
CCACTGCGCCTTCCGATGTCGGACCTACTCCGGAAGCGTCGCGCACGAGA
ACTCTTACCGCAGCCCCCTCAAGCACTGCTTCGGGAGGTTCCGCCCTCCA
GCTGCATCAGCAGCAGCGGCTGCGTTGCCCGGGGGATGGGGTAGGGTTGT
AGAGGGCGGGGAGAGCCGAGGGGCGCCGCCACTCCAGTTGGACCCTCTTC
TTTTAGAACTGGCGGACCCATGAGCTTTGAAGCCGGAGGGCGGATGGACC
GGGTCTACACGTCTGTCTGTACATAGCCACGTGTGTCGTTTTCATGGTGG
ATGGACGAGTGTTCCCGCCGGGATTCGGCAGAGGTATTTTGCTGCGGGCA
AAGGTTGCCCAAGTCGTACACCATACAATAATAGAGCCTGAAGATATTTT
GTACATATTCTATGCACATCACTTGCTGTTGTTTTCTTCTTGCGCGTGTG
AAGGAACGTAACTTGTAGATCTTGATGCCATTTCTCGCTCTTGAGCGGAT
CGGTTGGGATAGCTTCAGATATCGATGTAGCTCAGTTAATATTTTCTTTG
GAGGCCTGTCCCTGGCTCCTTTACCTTTGTGTCCATCCTCTTTCGTGTAT
TGCGCCTGACTGGCATTCGGAGATGTATGTGTGGATGGATGCAAACGTGC
GAAAATCAGAGACAAGCGTACCGTAGGTGCGCTTCGTACGGGGGCAATCA
AAAGTGAGAGGGGACCTTGCCGGCGGATGTCTTTAGCTTCGAACCGAACA
ATGCGCCGAAGAGAATGAGCACATACAGCAGTATTGTTCCTTCCTTCCCA
GCCGGAATTGAACAGTTTTTTTTTGTGGAAGAATTGATCATAAACGCATG
ACGAACGACAGTAATTGGCCGACTAAAAATTGAATTAAGTTAGCCGGTGA
CCGCGGGAATCCACCGCGTCAAGTGTTTGATCAGCACGGACAGCTGGAGG
AACTGGATGGAGAGACCGGAACGTTTTTACATGTGAAGGACAACAACAAC
ACGGGCGCCCCGCCGGGTCGCTCAGAGGGAAACCTCCTTCACCTGACGTT
TTTGGACGTTAGCGAGGGCGAATCTCAGCGCAACCTCTGCAGAACTTGAG
CAGTGTGCATCACGATTGCGAATCGTGGATACGCGAAGTTCGAAGTCACG
GTCGACAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1759:5191..7850+

>mRNA_Ecto-sp13_S_contig1759.5306.1 ID=mRNA_Ecto-sp13_S_contig1759.5306.1|Name=mRNA_Ecto-sp13_S_contig1759.5306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1617bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1759:5191..7850+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCTACCCCTCGTTTCCGGCTGTTCGACAACCGCCGGGGGAGCAA
TCAGATGGACGAAGAAGCAGGTCAGACGACGACGACCCTGCCCCGCCGGC
GCATGCTTACCTCCTCCGTCGCCGTCGCGAGGCAGCGAAGGCGGAACCGG
AGGAGGCCCGGCGCCCGCCGAGGCCTAGCGGCTCTCGTCCCGCGACTGCT
GGCTTCTTCCATCTCGAGAGCACGCCGGCGCCGAGCGCTGCTGCTCCTGC
TGGTGCTCGCGGCGTGCGGCGCCGGGGTGCTTGCGAGCGCTAGGCTGCTG
GCCCGGGCGTCGTTGTCGTATTCATCGTGGCCGTCCTCGTCGTCCCTGCC
AGGATACTTGCATTCATCTGGCGCAGGCTCCGCTGATAGAGACGACGACG
ACAATGATGACGATGACAATGATGCTGCCCATCGCCATAAGCACCGACGC
CCAGCCGTGAGTCTCGGCCCAGACGCGATCCCTTCCGTGCTATTAGTCGG
GCGAGGGCCGTCAGGCTTGCCGTCTGGCCAGGCGCTGCCCGGCGGCGCGC
GGAAAGCGAGCAGCCTTGTTGATGCGACGGGGGCCGTGCTAGGTGGCGGC
GGCGGGGGCGAGACACGGAGAGGGGGGGTGCGAGAGAACAGTAGTGATCC
CTACCGGTGTCGAAACACCGTTCAAGGGGCTACGCTCGTGGCAGACTCGG
AAGGGAGGGTGTGTCACCGTGCGGAGCTAGTGGTAGAGGGAGACGACGAT
GATAATGTCCGCCACCGCCCGGGGTGTTGCGCCCCGCGCCCGCCAGCGCT
GCCGCTGCTGCCGCTGCGCGGCGGCGGCGGCGGCAGCGGTGATCTCGCCT
CCAGTTCGCCTCCAGCGGCTGACGACAAACACAAGCATCCTCCCGCGGCG
CCACGTTCCGTCTCGATGACGACAAGAACAGAGACCCGCCGCAGGGGAGA
GGGAGGCGCGGGCGTGGAGCTGGTGGCTCTGGCGAACGGCGGCGGCGGCG
GGGGGGCGGGGGGGGTTCCACCGGAAGAGGCCCTGTCGACGCCATTCTCG
TGCTGGAGCTGCGACGTGGGAGAAGACGGCCTCTCCGGGAACAACGGCGG
CGGCAACGGCAGCTCTTCTTCCTCGTCGTGCTGCATCTCGTACGAGTTTT
GCGTGTCGTGCTGCCAGAACCCCCAGCGGGGAAAGGAGCGGGAGGCCATC
CAGGCGTCAGCCGCACTTTCGGGACACCCGGCCTATCGCCACCTCCTAGG
GCCCGGTAACAACGACGCGGCAAACAAGAGAGGACCGCCGCCCCCGCGTC
AACTCCGGGCTTCGGCTGCGGCAGCGGAAGCAGGAGTTGGAAAAAGCCAA
CAAGAGGAAGCGGAGGAACGCGGCGCGCGAGAATTGGCCTTCACCCACTG
CGCCTTCCGATGTCGGACCTACTCCGGAAGCGTCGCGCACGAGAACTCTT
ACCGCAGCCCCCTCAAGCACTGCTTCGGGAGGTTCCGCCCTCCAGCTGCA
TCAGCAGCAGCGGCTGCGTTGCCCGGGGGATGGGGTAGGGTTGTAGAGGG
CGGGGAGAGCCGAGGGGCGCCGCCACTCCAGTTGGACCCTCTTCTTTTAG
AACTGGCGGACCCATGA
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