prot_Ecto-sp13_S_contig1759.5305.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1759.5305.1
Unique Nameprot_Ecto-sp13_S_contig1759.5305.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length136
Homology
BLAST of mRNA_Ecto-sp13_S_contig1759.5305.1 vs. uniprot
Match: D7FXG5_ECTSI (Arginine/serine-rich splicing factor 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXG5_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 1.580e-95
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
Query:    1 MTNRIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRD 136
            MTNRIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRD
Sbjct:    1 MTNRIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRD 136          
BLAST of mRNA_Ecto-sp13_S_contig1759.5305.1 vs. uniprot
Match: A0A7S0Q5F1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q5F1_9EUKA)

HSP 1 Score: 147 bits (371), Expect = 5.770e-43
Identity = 67/133 (50.38%), Postives = 98/133 (73.68%), Query Frame = 0
Query:    4 RIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRD 136
            R+Y+G LS +TR+RDL+R F RYGR+E++D++ GFAF+EF D RDA+DAV +M GR+ DG RI V+  +G R  G +   + +  RI VEGLD  TSWQDLKDFGR+ G ++Y+DV+    +++G++EY  ++
Sbjct:    6 RVYVGGLSSYTRERDLERVFDRYGRVERVDLKRGFAFVEFSDDRDADDAVYDMHGRDLDGRRITVEHAKGGR--GARGPAKGSGFRIKVEGLDMRTSWQDLKDFGRKVGDIMYTDVWVDGSKKFGIMEYGRKE 136          
BLAST of mRNA_Ecto-sp13_S_contig1759.5305.1 vs. uniprot
Match: A0A7S0DYD6_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DYD6_9CRYP)

HSP 1 Score: 132 bits (333), Expect = 6.530e-36
Identity = 62/133 (46.62%), Postives = 90/133 (67.67%), Query Frame = 0
Query:    4 RIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRD 136
            R+Y+GHLS   R+RDLD  F R+G+I  I ++ GFAF+E++   DAE AV +MDG   +G RI+V+  +     GPK  +    +R+  E L  +TSWQDLKDF R+AG+V+++DVF  +G R G++EY +RD
Sbjct:   13 RVYVGHLSSRVRERDLDDEFSRFGKIRDISLKQGFAFVEYDHSEDAEYAVRKMDGVNLEGMRILVEFAKETPKRGPKGGS---GYRLYAENLSQNTSWQDLKDFARKAGKVIFTDVFSERGERLGIIEYATRD 142          
BLAST of mRNA_Ecto-sp13_S_contig1759.5305.1 vs. uniprot
Match: L1JS00_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JS00_GUITC)

HSP 1 Score: 131 bits (330), Expect = 2.310e-35
Identity = 62/133 (46.62%), Postives = 90/133 (67.67%), Query Frame = 0
Query:    4 RIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRD 136
            R+Y+GHLS   R+RDLD  F R+G+I  I ++ GFAF+E++   DAE AV +MDG   +G RI+V+  +     GP+  +    +RI  E L  +TSWQDLKDF R+AG+V+Y+DVF  +G + GV+EY +R+
Sbjct:    6 RVYVGHLSSRVRERDLDDEFSRFGKIRDISLKQGFAFVEYDHSEDAEYAVRKMDGVNLEGMRILVEFAKETPKRGPRGGS---GYRIYAENLSQNTSWQDLKDFARKAGKVIYTDVFSERGEKLGVIEYATRE 135          
BLAST of mRNA_Ecto-sp13_S_contig1759.5305.1 vs. uniprot
Match: A0A6P8RXC7_GEOSA (serine/arginine-rich splicing factor 5-like isoform X1 n=4 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8RXC7_GEOSA)

HSP 1 Score: 129 bits (324), Expect = 1.870e-34
Identity = 70/155 (45.16%), Postives = 95/155 (61.29%), Query Frame = 0
Query:    4 RIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQP-----GRGHRPNGPKFATR-----------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRD 136
            R++IG LSPH R+RD+++ F  YGRI++I+++ GF F+EFED RDA+DAV E++G+E    R+ ++      GRG    G +F TR                 RT+HRI VE L S  SWQDLKDF R+AG+V Y D   R  +  GVVE+ S D
Sbjct:    5 RVFIGRLSPHARERDVEKFFKGYGRIKEINLKNGFGFVEFEDHRDADDAVYELNGKELCNERVTIEHARNRRGRGRFGGGGRFPTRFSYQYRSSGSSRYGPPLRTKHRIIVENLSSRVSWQDLKDFMRKAGEVTYVDAH-RSNKNEGVVEFASFD 158          
BLAST of mRNA_Ecto-sp13_S_contig1759.5305.1 vs. uniprot
Match: A0A7S0YN20_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YN20_9CRYP)

HSP 1 Score: 125 bits (314), Expect = 6.890e-34
Identity = 65/134 (48.51%), Postives = 89/134 (66.42%), Query Frame = 0
Query:    3 NRIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRD 136
            +RIY+G+LS   R+RDLD  FGRYGRI  I ++ GFAFIEFE   DA  A+ ++DG   DG R+ V+  +     GP+   + T  R+TVE L   TSWQDLKDFGR  G+VLY+DV   +G + GV+E+ +++
Sbjct:   20 SRIYVGNLSHRLRERDLDDEFGRYGRIRDIFLKSGFAFIEFERPDDASYAIRKLDGVTLDGQRLQVEKAKEAPKRGPRPG-QSTGFRVTVENLSVATSWQDLKDFGRTGGRVLYTDVHNERGGKVGVIEFETKE 152          
BLAST of mRNA_Ecto-sp13_S_contig1759.5305.1 vs. uniprot
Match: A0A6P7IBI1_9TELE (serine/arginine-rich splicing factor 6-like isoform X1 n=3 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7IBI1_9TELE)

HSP 1 Score: 129 bits (325), Expect = 6.920e-34
Identity = 68/149 (45.64%), Postives = 96/149 (64.43%), Query Frame = 0
Query:    4 RIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATR----------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGR-RWGVVEYVSR 135
            R+Y+G LS H R++D+ R F  YG++ ++D++ G+ F+EFED RDA+DAV E++G+E  G R+V++  RG R +G  +A R                RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D    +GR   GV+E+ SR
Sbjct:    3 RVYVGRLSYHVREKDIQRFFSGYGKLLEVDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGYGYAGRSSSWNRPGRDKYGPPVRTEHRLIVENLSSKCSWQDLKDFMRQAGEVTYADA--HKGRANEGVIEFRSR 149          
BLAST of mRNA_Ecto-sp13_S_contig1759.5305.1 vs. uniprot
Match: UPI001403BE55 (serine/arginine-rich splicing factor 5-like n=3 Tax=Elasmobranchii TaxID=7778 RepID=UPI001403BE55)

HSP 1 Score: 128 bits (321), Expect = 7.900e-34
Identity = 70/154 (45.45%), Postives = 97/154 (62.99%), Query Frame = 0
Query:    1 MTNRIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNG---------------PKFATR-----RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVS 134
            M++R++IG LSPH R+RD+++ F  YGRI++ID++ GF F+EF+D RDA+DAV E+DG+E    R+ V+  R  RP G               P+  +R     RTE+R+ VE L S  SWQDLKDF RQAG+V ++D   R     GVVE+ S
Sbjct:    1 MSSRVFIGRLSPHARERDVEKFFKGYGRIKEIDLKNGFGFVEFDDHRDADDAVYELDGKELCSERVTVEHARA-RPRGGRGGGRYQGRFSPRRPRSESRNGPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAH-RHKMNEGVVEFAS 152          
BLAST of mRNA_Ecto-sp13_S_contig1759.5305.1 vs. uniprot
Match: H2V8W5_TAKRU (Uncharacterized protein n=2 Tax=Takifugu TaxID=31032 RepID=H2V8W5_TAKRU)

HSP 1 Score: 129 bits (323), Expect = 8.500e-34
Identity = 72/154 (46.75%), Postives = 95/154 (61.69%), Query Frame = 0
Query:    4 RIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREF-------DGARIVVQPGRGHRPNGPKFATR----------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVS 134
            RI+IG LSP  R++D++R F  YGRI  ID++ GF F+EF+D RDAEDAV E+DG+E        + AR+ ++ GRG RP G +F+ R                RTE+R+ VE L S  SWQDLKDF RQAG+V ++D   R     GVVE+ S
Sbjct:    5 RIFIGRLSPTAREKDVERFFKGYGRIRDIDLKKGFGFVEFDDPRDAEDAVYELDGKELCNERVTIEHARVRLRGGRGRRPGGGRFSDRYGRGSQSSRSRNPPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAH-RPKLNEGVVEFAS 157          
BLAST of mRNA_Ecto-sp13_S_contig1759.5305.1 vs. uniprot
Match: UPI00159C61E2 (serine/arginine-rich splicing factor 6 isoform X1 n=4 Tax=Carangaria TaxID=1489904 RepID=UPI00159C61E2)

HSP 1 Score: 129 bits (324), Expect = 1.330e-33
Identity = 69/155 (44.52%), Postives = 95/155 (61.29%), Query Frame = 0
Query:    4 RIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATR----------------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGR-RWGVVEYVSR 135
            R+Y+G LS H R++D+ R F  YG++ +ID++ G+ F+EFED RDA+DAV E++G+E  G R+V++  RG R +G  F  R                      RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D    +GR   G++EY SR
Sbjct:    3 RVYVGKLSYHVREKDIQRFFSGYGKLLEIDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGSGFGGRSKFSGGHSSWNRTGRDKYGPPVRTEHRLIVENLSSRCSWQDLKDFMRQAGEVTYADA--HKGRANEGIIEYRSR 155          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1759.5305.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXG5_ECTSI1.580e-95100.00Arginine/serine-rich splicing factor 6 n=2 Tax=Ect... [more]
A0A7S0Q5F1_9EUKA5.770e-4350.38Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S0DYD6_9CRYP6.530e-3646.62Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1JS00_GUITC2.310e-3546.62Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A6P8RXC7_GEOSA1.870e-3445.16serine/arginine-rich splicing factor 5-like isofor... [more]
A0A7S0YN20_9CRYP6.890e-3448.51Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6P7IBI1_9TELE6.920e-3445.64serine/arginine-rich splicing factor 6-like isofor... [more]
UPI001403BE557.900e-3445.45serine/arginine-rich splicing factor 5-like n=3 Ta... [more]
H2V8W5_TAKRU8.500e-3446.75Uncharacterized protein n=2 Tax=Takifugu TaxID=310... [more]
UPI00159C61E21.330e-3344.52serine/arginine-rich splicing factor 6 isoform X1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 4..69
e-value: 5.2E-20
score: 82.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 5..66
e-value: 3.3E-16
score: 58.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 3..73
score: 17.012
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 87..136
e-value: 3.2E-9
score: 38.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..82
e-value: 4.8E-22
score: 80.0
NoneNo IPR availablePANTHERPTHR23003:SF27NUCLEOLAR PROTEIN 3coord: 1..136
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 1..136
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..135

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1759contigEcto-sp13_S_contig1759:3..4528 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1759.5305.1mRNA_Ecto-sp13_S_contig1759.5305.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1759 3..4528 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1759.5305.1 ID=prot_Ecto-sp13_S_contig1759.5305.1|Name=mRNA_Ecto-sp13_S_contig1759.5305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
MTNRIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAE
DAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTS
WQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf