mRNA_Ecto-sp13_S_contig17582.5302.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17582.5302.1
Unique NamemRNA_Ecto-sp13_S_contig17582.5302.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17582.5302.1 vs. uniprot
Match: D8LDG4_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG4_ECTSI)

HSP 1 Score: 410 bits (1055), Expect = 1.990e-140
Identity = 215/234 (91.88%), Postives = 217/234 (92.74%), Query Frame = 1
Query:    1 RYLNSPVTFDLTGEILKASNTLLNFTGDNAIEGADSIPQDLIADARGLAFITFVKAGLFVTARVGTGLVVARRPDGGWSAPSALGSFGLGWGFQVGGELTDVVIVLNTTSAVEAFSGTGQVSLGTELSLSVGPVGRTASTDIRAGDGGVAAAFSYAHSKGVFIGVSLEAATMVTRKDTNRDFYGTKVSAQELLLGDFPPPKAAEPLYKALEEVGESWQTWHEFRMIVRGAVVVG 702
            RYLNSPVTFDLTGEILKASNTLLNFTGDN IEGADSIPQDLIADARGLAFITFVKAGLFVTARVGTGLVVARRPDGGWSAPSALGSFGLGWGFQVGGELTDVVIVLNT SAVEAF+GTGQVSLGTELSLSVGPVGRTASTDIRAGDGGVAAAFSYAHSKGVFIGVSLEAATMVTRKDTNRDFYGTKVSAQELLLGDFPPPKAAEPLYKALEEV      W   R+I  G    G
Sbjct:  113 RYLNSPVTFDLTGEILKASNTLLNFTGDNVIEGADSIPQDLIADARGLAFITFVKAGLFVTARVGTGLVVARRPDGGWSAPSALGSFGLGWGFQVGGELTDVVIVLNTMSAVEAFTGTGQVSLGTELSLSVGPVGRTASTDIRAGDGGVAAAFSYAHSKGVFIGVSLEAATMVTRKDTNRDFYGTKVSAQELLLGDFPPPKAAEPLYKALEEVETRHTVWERSRLIPPGTAAAG 346          
BLAST of mRNA_Ecto-sp13_S_contig17582.5302.1 vs. uniprot
Match: A0A835ZIT6_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIT6_9STRA)

HSP 1 Score: 285 bits (728), Expect = 6.790e-91
Identity = 144/216 (66.67%), Postives = 176/216 (81.48%), Query Frame = 1
Query:    1 RYLNSPVTFDLTGEILKASNTLLNFTGDNAIEGADSIPQDLIADARGLAFITFVKAGLFVTARVGTGLVVARRPDGGWSAPSALGSFGLGWGFQVGGELTDVVIVLNTTSAVEAFSGTGQVSLGTELSLSVGPVGRTASTDIRAGDGGVAAAFSYAHSKGVFIGVSLEAATMVTRKDTNRDFYGTKVSAQELLLGDFPPPKAAEPLYKALEEVGES 648
            RY NSP+   L  EI+KA++ L NFT DN IEG D +P DLI  A G+AFITFV+AGLF T +VGTGLVV+RRPDG WSAP+A+ S G+GWGFQ G ++TDV+++L+T  AV+AFSG G VSLGT+LS+SVGPVGR ASTDIRAGD G+A+ FSYAHSKG+F+G S EA T+V+R D N+ FYGT VSA+ELLLG++P PKAAEPLY+ALEEV  S
Sbjct:  122 RYFNSPLRLSLQDEIVKATHALQNFTCDNRIEGEDRLPGDLIRAAAGVAFITFVRAGLFFTGKVGTGLVVSRRPDGIWSAPAAIASAGVGWGFQAGADVTDVLVLLHTRKAVDAFSGRGSVSLGTQLSISVGPVGRGASTDIRAGDAGLASVFSYAHSKGLFLGASFEAGTIVSRTDANQTFYGTAVSAKELLLGNYPAPKAAEPLYRALEEVESS 337          
BLAST of mRNA_Ecto-sp13_S_contig17582.5302.1 vs. uniprot
Match: A0A7S4DC62_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC62_HETAK)

HSP 1 Score: 280 bits (717), Expect = 2.780e-90
Identity = 141/213 (66.20%), Postives = 172/213 (80.75%), Query Frame = 1
Query:    1 RYLNSPVTFDLTGEILKASNTLLNFTGDNAIEGADSIPQDLIADARGLAFITFVKAGLFVTARVGTGLVVARRPDGGWSAPSALGSFGLGWGFQVGGELTDVVIVLNTTSAVEAFSGTGQVSLGTELSLSVGPVGRTASTDIRAGDGGVAAAFSYAHSKGVFIGVSLEAATMVTRKDTNRDFYGTKVSAQELLLGDFPPPKAAEPLYKALEEV 639
            RY N+P +F L  +I KAS TLLNFT +N +EGAD++P++L+ +A G+A +TFVKAG F T R GTGLVV R P GGWSAPSA+ S G+GWGFQ+GGE+TDVV+VLNT SAVEAF+ + QVSLGTELS+SVGP+GR A+TD+RAGDGGV AAFSYAHS+G+F+GVSLEAA +  R D N  FYG KVS +ELLLG   PP AA PLY+A+ EV
Sbjct:  131 RYFNAPFSFSLADQIKKASYTLLNFTAENQLEGADTLPRELLWEAEGIAILTFVKAGFFFTGRFGTGLVVGRLPGGGWSAPSAVASSGVGWGFQIGGEVTDVVVVLNTRSAVEAFTSSAQVSLGTELSVSVGPLGRGAATDVRAGDGGVTAAFSYAHSRGLFVGVSLEAAVLTARDDINEAFYGHKVSPKELLLGMQDPPPAARPLYEAIAEV 343          
BLAST of mRNA_Ecto-sp13_S_contig17582.5302.1 vs. uniprot
Match: A0A8J2SNQ8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNQ8_9STRA)

HSP 1 Score: 244 bits (622), Expect = 2.350e-75
Identity = 123/214 (57.48%), Postives = 161/214 (75.23%), Query Frame = 1
Query:    1 RYLNSPVTFDLTGEILKASNTLLNFTGDNAIEGA-DSIPQDLIADARGLAFITFVKAGLFVTARVGTGLVVARRPDGGWSAPSALGSFGLGWGFQVGGELTDVVIVLNTTSAVEAFSGTGQVSLGTELSLSVGPVGRTASTDIRAGDGGVAAAFSYAHSKGVFIGVSLEAATMVTRKDTNRDFYGTKVSAQELLLGDFPPPKAAEPLYKALEEV 639
            RYLN P+ FD+  EI KA++TLLNF  DNA+EGA D +P DLIA A GLAF+T ++AG F +ARVG+GLV+AR  DGGWSAPSA+ + G GWG Q+GGE+TD+++VLN+  AV+AF+ T Q+SLGTE+ ++VGP GR+A T + AGDGG +A FSYAHSKG+F GV+L A  ++ R D N  FYG   +   +L G    P+AA+PLY AL+EV
Sbjct:  125 RYLNVPLQFDMRSEIQKATHTLLNFCADNALEGASDQVPADLIASAWGLAFLTTMQAGFFFSARVGSGLVIARTRDGGWSAPSAVCTAGAGWGLQIGGEVTDMLVVLNSQDAVDAFASTAQMSLGTEIGMAVGPFGRSAETAVTAGDGGASAVFSYAHSKGLFAGVALHACVVLARPDCNESFYGADHAVDAILSGAVERPRAAQPLYDALDEV 338          
BLAST of mRNA_Ecto-sp13_S_contig17582.5302.1 vs. uniprot
Match: A0A024UDI5_9STRA (FYVE-type domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UDI5_9STRA)

HSP 1 Score: 223 bits (569), Expect = 6.760e-68
Identity = 114/216 (52.78%), Postives = 156/216 (72.22%), Query Frame = 1
Query:    1 RYLNSPVTFDLTGEILKASNTLLNFTGDNAIEGADSIPQDLIADARGLAFITFVKAGLFVTARVGTGLVVARRPDGGWSAPSALGSFGLGWGFQVGGELTDVVIVLNTTSAVEAFSGTGQVSLGTELSLSVGPVGRTASTDIRAGDGGVAAAFSYAHSKGVFIGVSLEAATMVTRKDTNRDFYGTKVSAQELLLGDFPPPKAAEPLYKALEEVGES 648
            R+ NSP +F L  E+ KA+ ++ NF  +  I+   SIP  L+ +A+G+AF+T +K G  VT R+GTGLV+++ PDG WSAPSA+ + G+GWG QVGGE+TD V++LNT +AV+ F   GQV+LG EL ++ GPVGR A+  + AG GG+A  +SY+HSKG+FIG+SLE + ++ R D NR+FYG  V+A ELL G   PP AA+PLY ALEEV  S
Sbjct:  139 RFFNSPYSFTLREEVRKAAYSIKNFMLEGVIKD-QSIPLPLLTNAQGIAFLTVLKVGFVVTGRLGTGLVLSKLPDGSWSAPSAIATAGIGWGAQVGGEVTDFVMILNTRAAVDTFCAQGQVNLGAELGVAAGPVGRVAAGAVEAGPGGIAPCYSYSHSKGLFIGISLEGSVIMARPDVNREFYGKDVTAAELLGGRERPPVAAQPLYDALEEVAMS 353          
BLAST of mRNA_Ecto-sp13_S_contig17582.5302.1 vs. uniprot
Match: A0A485KLR6_9STRA (Aste57867_8862 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLR6_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.030e-67
Identity = 115/216 (53.24%), Postives = 155/216 (71.76%), Query Frame = 1
Query:    1 RYLNSPVTFDLTGEILKASNTLLNFTGDNAIEGADSIPQDLIADARGLAFITFVKAGLFVTARVGTGLVVARRPDGGWSAPSALGSFGLGWGFQVGGELTDVVIVLNTTSAVEAFSGTGQVSLGTELSLSVGPVGRTASTDIRAGDGGVAAAFSYAHSKGVFIGVSLEAATMVTRKDTNRDFYGTKVSAQELLLGDFPPPKAAEPLYKALEEVGES 648
            R+LNSP +F L  E+ KA+ ++ NF  D  I+   SIP  L+ +A+G+AF+T +K G  VT R+GTGLV+++  DG WSAPSA+G+ G+GWG QVGGE+TD VI+LNT +AV+ F   GQV+LG EL ++ GP+GR A+  + AG GG+A  +SY+HSKG+FIG+SLE + +V R D NR+FYG  ++A ELL G   PP AA PLY ALE V  S
Sbjct:  138 RFLNSPYSFTLREEVRKAAYSVKNFMLDGLIKD-QSIPLPLLTNAQGIAFLTVLKVGFVVTGRLGTGLVLSKLADGSWSAPSAIGTAGIGWGAQVGGEVTDFVIILNTRAAVDTFCAQGQVNLGAELGVAAGPLGRVAAGSMEAGPGGIAPCYSYSHSKGLFIGISLEGSVIVARPDVNREFYGRDITAAELLSGQERPPVAAMPLYDALEAVALS 352          
BLAST of mRNA_Ecto-sp13_S_contig17582.5302.1 vs. uniprot
Match: T0R042_SAPDV (Ysc84 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R042_SAPDV)

HSP 1 Score: 222 bits (565), Expect = 1.490e-67
Identity = 113/216 (52.31%), Postives = 155/216 (71.76%), Query Frame = 1
Query:    1 RYLNSPVTFDLTGEILKASNTLLNFTGDNAIEGADSIPQDLIADARGLAFITFVKAGLFVTARVGTGLVVARRPDGGWSAPSALGSFGLGWGFQVGGELTDVVIVLNTTSAVEAFSGTGQVSLGTELSLSVGPVGRTASTDIRAGDGGVAAAFSYAHSKGVFIGVSLEAATMVTRKDTNRDFYGTKVSAQELLLGDFPPPKAAEPLYKALEEVGES 648
            R+LNSP +F L  EI KA+ ++ NF  D  I+   SIP  L+ +A+G+AF+T +K G  VT RVGTGLV+A+ PDG WSAPSA+ + G+GWG Q+GG +TD VI+LNT SAV+ F   GQV++G EL ++ GP+GR A+  + AG GG+A  +SY+HSKG+FIG+S+E + ++ R D N +FYG +V+A +LL G  PPP AA+PLY AL    ES
Sbjct:  135 RFLNSPYSFTLREEIRKAAYSVKNFMYDGVIKD-QSIPLPLLTNAKGIAFLTVLKVGFVVTGRVGTGLVIAKLPDGSWSAPSAIATAGIGWGAQIGGGVTDFVIILNTRSAVDTFCAQGQVNMGAELGVAAGPLGRVAAGAMEAGPGGIAPCYSYSHSKGLFIGISVEGSVVLARPDVNLEFYGKEVTAADLLSGREPPPVAAQPLYDALTMAVES 349          
BLAST of mRNA_Ecto-sp13_S_contig17582.5302.1 vs. uniprot
Match: D8LEA9_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEA9_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 3.280e-67
Identity = 113/213 (53.05%), Postives = 156/213 (73.24%), Query Frame = 1
Query:    4 YLNSPVTFDLTGEILKASNTLLNFTGDNAIEGADSIPQDLIADARGLAFITFVKAGLFVTARVGTGLVVARRPDGGWSAPSALGSFGLGWGFQVGGELTDVVIVLNTTSAVEAFSGTGQVSLGTELSLSVGPVGRTASTDIRAGDGGVAAAFSYAHSKGVFIGVSLEAATMVTRKDTNRDFYGTKVSAQELLLGDFPPPKAAEPLYKALEEVG 642
            YLN P+ F L  E+ KA+ T+ NF+ +  I+   SIPQ+L++ A+GLAF+T +K G  V  RVGTGLV+++  +G WSAPSA+ + G+GWG  +GGE+TD V+VLNT +A+EAFSG GQVS+G ELS++VGPVGRT + ++     GVA A+SY+HS+G+F G+SLE   +V+R D NR FYG +VS ++LL G   PP AA PLY+AL+  G
Sbjct:  321 YLNRPIVFTLGAEVRKAAYTIHNFSKEGMIQD-QSIPQELLSRAKGLAFLTVIKGGFIVAGRVGTGLVISKTDEGVWSAPSAIATLGMGWGALIGGEITDFVLVLNTDAALEAFSGRGQVSIGAELSVAVGPVGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRDLLSGSVAPPPAARPLYEALDNRG 532          
BLAST of mRNA_Ecto-sp13_S_contig17582.5302.1 vs. uniprot
Match: A0A067CDH3_SAPPC (FYVE-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CDH3_SAPPC)

HSP 1 Score: 218 bits (556), Expect = 2.480e-66
Identity = 112/216 (51.85%), Postives = 154/216 (71.30%), Query Frame = 1
Query:    1 RYLNSPVTFDLTGEILKASNTLLNFTGDNAIEGADSIPQDLIADARGLAFITFVKAGLFVTARVGTGLVVARRPDGGWSAPSALGSFGLGWGFQVGGELTDVVIVLNTTSAVEAFSGTGQVSLGTELSLSVGPVGRTASTDIRAGDGGVAAAFSYAHSKGVFIGVSLEAATMVTRKDTNRDFYGTKVSAQELLLGDFPPPKAAEPLYKALEEVGES 648
            R+LNSP +F L  EI KA+ ++ NF  D  I+   SIP  L+ +A+G+AF+T +K G  VT RVGTGLV+A+ PDG WSAPSA+ + G+GWG Q+GG +TD VI+LNT SAV+ F   GQV++G EL ++ GP+GR A+  + AG GG+A  +SY+HSKG+FIG+S+E + ++ R D N +FYG +V+A +LL G   PP AA+PLY AL    ES
Sbjct:  126 RFLNSPYSFTLREEIRKAAYSVKNFMYDGVIKD-QSIPLPLLTNAKGIAFLTVLKVGFVVTGRVGTGLVIAKLPDGSWSAPSAIATAGIGWGAQIGGGVTDFVIILNTRSAVDTFCAQGQVNMGAELGVAAGPLGRVAAGAMEAGPGGIAPCYSYSHSKGLFIGISVEGSVVLARPDVNLEFYGKEVTAADLLSGRERPPVAAQPLYDALTMAVES 340          
BLAST of mRNA_Ecto-sp13_S_contig17582.5302.1 vs. uniprot
Match: A0A8K1C966_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C966_PYTOL)

HSP 1 Score: 218 bits (555), Expect = 9.150e-66
Identity = 115/211 (54.50%), Postives = 153/211 (72.51%), Query Frame = 1
Query:    1 RYLNSPVTFDLTGEILKASNTLLNFTGDNAIEGADSIPQDLIADARGLAFITFVKAGLFVTARVGTGLVVARRPDGGWSAPSALGSFGLGWGFQVGGELTDVVIVLNTTSAVEAFSGTGQVSLGTELSLSVGPVGRTASTDIRAG-DGGVAAAFSYAHSKGVFIGVSLEAATMVTRKDTNRDFYGTKVSAQELLLGDFPPPKAAEPLYKAL 630
            R+LNSP +F L  EI KA+ ++ NF  D  I+   SIP  L+A A+G+AF+T +K G  +T RVGTGLV+++ PDG WSAPSA+G+ G+GWG Q+GGELTD VI+LNT  AV+AF+  GQV+LG EL ++ GP+GRTA+  + A  D  +A  +SY+HSKG+F G+SLE + ++TR D NR FYG +V A ELL G   PP AA PLY+AL
Sbjct:  140 RFLNSPYSFTLREEIRKAAYSVKNFMYDGVIKD-QSIPLPLLAKAKGIAFLTVIKVGFVLTGRVGTGLVISKLPDGRWSAPSAIGTAGIGWGAQIGGELTDFVIILNTKRAVDAFTSKGQVNLGAELGVAAGPLGRTAAGSVEASADLDIAPCYSYSHSKGLFAGISLEGSVILTRPDINRAFYGREVQATELLGGMEAPPNAATPLYEAL 349          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17582.5302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDG4_ECTSI1.990e-14091.88FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835ZIT6_9STRA6.790e-9166.67FYVE-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S4DC62_HETAK2.780e-9066.20Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J2SNQ8_9STRA2.350e-7557.48Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A024UDI5_9STRA6.760e-6852.78FYVE-type domain-containing protein n=3 Tax=Aphano... [more]
A0A485KLR6_9STRA1.030e-6753.24Aste57867_8862 protein n=1 Tax=Aphanomyces stellat... [more]
T0R042_SAPDV1.490e-6752.31Ysc84 domain-containing protein n=1 Tax=Saprolegni... [more]
D8LEA9_ECTSI3.280e-6753.05FYVE-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A067CDH3_SAPPC2.480e-6651.85FYVE-type domain-containing protein n=2 Tax=Saprol... [more]
A0A8K1C966_PYTOL9.150e-6654.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17582contigEcto-sp13_S_contig17582:6..3570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score414.5
Seed ortholog evalue3.4e-113
Seed eggNOG ortholog2880.D8LDG4
Model size702
KEGG koko:K20523
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.regulation of ruffle assembly
EggNOG OGsCOG2930@1,KOG1843@2759
Cds size702
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462914.2682247-CDS-Ecto-sp13_S_contig17582:5..1701681462914.2682247-CDS-Ecto-sp13_S_contig17582:5..170Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17582 6..170 +
1681462914.277771-CDS-Ecto-sp13_S_contig17582:1451..15801681462914.277771-CDS-Ecto-sp13_S_contig17582:1451..1580Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17582 1452..1580 +
1681462914.2859728-CDS-Ecto-sp13_S_contig17582:2080..21461681462914.2859728-CDS-Ecto-sp13_S_contig17582:2080..2146Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17582 2081..2146 +
1681462914.2940774-CDS-Ecto-sp13_S_contig17582:2577..26941681462914.2940774-CDS-Ecto-sp13_S_contig17582:2577..2694Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17582 2578..2694 +
1681462914.3021886-CDS-Ecto-sp13_S_contig17582:3345..35701681462914.3021886-CDS-Ecto-sp13_S_contig17582:3345..3570Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17582 3346..3570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17582.5302.1prot_Ecto-sp13_S_contig17582.5302.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17582 6..3570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17582.5302.1

>prot_Ecto-sp13_S_contig17582.5302.1 ID=prot_Ecto-sp13_S_contig17582.5302.1|Name=mRNA_Ecto-sp13_S_contig17582.5302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=234bp
RYLNSPVTFDLTGEILKASNTLLNFTGDNAIEGADSIPQDLIADARGLAF
ITFVKAGLFVTARVGTGLVVARRPDGGWSAPSALGSFGLGWGFQVGGELT
DVVIVLNTTSAVEAFSGTGQVSLGTELSLSVGPVGRTASTDIRAGDGGVA
AAFSYAHSKGVFIGVSLEAATMVTRKDTNRDFYGTKVSAQELLLGDFPPP
KAAEPLYKALEEVGESWQTWHEFRMIVRGAVVVG
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mRNA from alignment at Ecto-sp13_S_contig17582:6..3570+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17582.5302.1 ID=mRNA_Ecto-sp13_S_contig17582.5302.1|Name=mRNA_Ecto-sp13_S_contig17582.5302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3565bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17582:6..3570+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTACCTCAACTCCCCCGTGACGTTCGACCTCACGGGCGAGATCTTGAA GGCCTCCAACACGCTGCTGAACTTCACCGGAGACAACGCCATCGAGGGCG CGGACAGCATCCCGCAGGACCTGATCGCAGACGCGAGAGGCCTGGCCTTC ATCACCTTCGTCAAGGTGAGGTGCAAGCGATCACACGTGAACGTGGACTT GGCTGTTTTCAACGGCACTGAGACTGGCGTCTCTTCGTCAGTCAACCGGT TTTAGCGGTCGATTCTACAAGTACCGTAGGTTTCACAAGATACCACACCC CCTGGACCGATTTTCGGAACTCGATACCTCGGCAGGAAAAGCAGTGACGG TGCCGAAAATGGCGGCGTTCGAACCGTCTCGTCGAGTGCTATCCGAAAAT GTATACTTCAGTTTCGTTATCCTTTTGGTCGTGGAGTGGTCGAGGTTTGA AAATCGGTCCAAGAGGTGTGATATCTTATGCAACCGACGGTAATACATTG GGTGGGGGGGGGGGGGGGGGGGGGACCTACTCGAGTTCCACGCGTTGGTT TTCCCACATCCTCCTCACCCCCCTACATGGGGAGAGNNNNNNNNNNGTGG GTTGGGGGTGAATGATTAAAAATGGGAAATGTTGGTGGTATTTCTTAGGC ACGAGGGGGTATTGGGGGGGGGGGGGGGGGGGCTGTTTATTGCAGCCGTG TGCCCAGGGAATGTGACCGGCACTTTTCGAAGATTAGCATGGCTTGCGGT GATTAAGCCTGCGCCAGCCGAACATACCGTCAATATAGCGGGCACCGGCA CGAAATAGCCCCCCCCCAATGTAGTAATAACACACACGAACGGCCAGCAA GCACGGTTGGCTCATGATGCCACGGGACTACTGCTGTGGCTTTATTTATT TATTTCGGGAAGGACCGAGCTACATGTTTGTGGAGATCGTACCTGCTGTA CCTCTGGCGTGCAGTCTTTTGAAATGAAATGTGCTTCCTCCATGAGCGTT CGTGAGGGTCACAAGGCTCCTGCACCTTTTTGATTGGTGGAGGTTTTGTG AAGGTCAATAGAGGACTGTGATGTCTACGACAGCTTTCATTACCTTTGGT GGACGCCCGCCAACCAAACATTGCATGTTGCGCGGCGCAATTAGAAAAAT ATTCGACTTTGTTTGATTTTTGCGCTGTCCATCCACTACTGCGATCTGAA GAAACAGTCGCCGTGCAATTCCTGTTATCGATACGCGCGCAAAGTTACCG CTGTTTATGTGCAGGCGGGAGAGAACAGCTTGTTGTCTGCCCACAGCAGT GTGTAGACGAGCACAGGAATAATCATCGCGGCCATCCATACTTGTCGTCC TAGCTAGCTGATTGGTGTGCTTGTGCACATGATTGTGTGTACTTATCGCG TCGATGGAACCCGCGGCGTACACCACGTGGGGGACCAAACCACCAGGCCG GGCTGTTCGTGACGGCGAGAGTGGGCACGGGTCTGGTGGTGGCGAGAAGG CCGGACGGGGGGTGGTCCGCGCCCTCGGCCCTGGGGAGCTTCGGCCTCGG CTGGGGGTTTCAAGTCGGCGGAGAAGTGAGCACGTTTTTCTTTCGTGTAC AAAAGTAGTGCTTTCGTTGTTGATGTTTGTGTTGGTGTTTTTTGGTGTTA TGCTGTTGTATTGCTGTTTGATGTGCTTTATTTATGTTGCCATTGTTGTT GTTGCTGCTGCTGTTTCGTTGCTGTTGTTGTTTTTGTTGAATTTCTTGCT GTGCCTGTTCGCATGTGGTAATCTTTCGAAGGGTGTGGCTGCGCCATCCC CAACTAATGCAACATATCCCCTCCGTCTTGGGTGCGCACTCAGACAGCGC TAATCGGCTCTCACCCTCTTGTGTGTTTGCCAAAGCACTACTTGTAACGG CGGCTGCGGCCGGACCCGAAGAGTTTTTGTGCACAAAAGCGTTTTTCTGT GCAAGTTCGTTTTTTTTCTCAAGAGTCAACAGCACCGCCATCACCATCCT GTACGCATGAAACGCCTGCTATTTTTTACGTTTCTCCCGCTTGATTGTGC TTGTGCGGCTGGGTGCGTAATGCAGCTGACGGACGTGGTGATCGTGCTGA ACACCACGAGCGCCGTGGAGGCCTTCTCTGGGACCGGACAGGTACTTGTA TGAGATATGACCCTTCCTCGGAATGGAAGGGTCGTTGTCGATGCTGTTGC TGTTGTTGTCCTTGTCTCTGGTGGTGGTGGTGGTGTGTTGCTGCTTTGTT TCCGAAGCGGTGGGTTGAGAATGGTCTACAGCGACATCACCCCCCCCCCC CTCGTCCACGAACATAGGTGATCGGTCGTGCGGGAACAATGCTCCGTCCT CTCGAGGACGCGTTGTCAATGGTCTAACCGCTAAGGCATGCCAAACATAA GAGAACGCCCCCTCCCCCACAAACGCATTTGGTGATGTGCTAGCCTAATC CGGTGAAAGCCCGGCAGGCTCCTTCCCGGCTCTGTAGGGGTGCGAGGTCA ATCGTCTACGGCGTGCACGGCCATGAGTACCCCCCGCCCCCCAACCCAAA CCGTACCACTGTGCCCCCCAAGGTATCTCTCGGAACGGAGCTGAGCCTCT CCGTCGGACCCGTCGGCAGAACTGCCTCAACCGACATCAGGGCCGGTGAC GGTGGCGTAGCGGCTGCCTTTTCGTACGCCCACTCCAAGGTATGCGGACA CACCGCCGTGTGCTGCCTCTAGCTCTGGTTAAGTGATAGTACTTTATAGG CGCGCCTTAACCCGTAAACTGGCTTCTGCCTTTCGTTCTCCCACTCCAAG ATATAGGCACTCACTGTGTGTTGCTACTGTTGCTGTATGGGCTCCGTTTA ATGGCAAGCGTACCATAACCCGTGAGCTAGTGGTAATTTTGCGTCACCCC TCACAGCGAGGAGGACGGGAGTTCAAAGCTCGGGGAAGAGCTGCTTCCCG AGAGGGACATCGTCCTTTTTCGACGATGGCCACCCGAGCAGGGAGGGATG GCATTGTATGGAGAGGAGAAGACACCACAGGATGCGCGGATGGCACGAAG GGTCTGATGGATTACATATTCTACACGTTCCTGGTGCCTGGTCTGCAAAC GCCAGCGGTTGTTTGAGCGTAGGAAGAACTTCTATTGGACCGCCATTTAA AACGGTGATGCAAGAATGGCGCCATTTTCCGCTCACCGCCACCACAAACT CTCCGTACTCTCATAGACGGATTCAAGGTAGCCACTTGAACCCCCCCCCC CTCGCTGCATGTCCGCCCATTTCCCGCCTTCCTTGCTCGCGTCAAACCCG CGCAAATTCGGCCCTTCCTCCTACTGTGGCTACCAAACAGGGCGTGTTCA TCGGGGTGTCTCTCGAGGCAGCCACCATGGTTACCCGCAAAGACACGAAC CGCGATTTCTACGGGACCAAGGTTTCCGCCCAGGAGCTCCTGCTGGGCGA CTTCCCCCCCCCGAAGGCAGCCGAACCTCTCTACAAAGCCCTCGAGGAGG TGGGAGAATCATGGCAGACTTGGCACGAGTTTCGTATGATTGTGCGTGGT GCCGTAGTTGTGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17582:6..3570+

>mRNA_Ecto-sp13_S_contig17582.5302.1 ID=mRNA_Ecto-sp13_S_contig17582.5302.1|Name=mRNA_Ecto-sp13_S_contig17582.5302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17582:6..3570+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTACCTCAACTCCCCCGTGACGTTCGACCTCACGGGCGAGATCTTGAA
GGCCTCCAACACGCTGCTGAACTTCACCGGAGACAACGCCATCGAGGGCG
CGGACAGCATCCCGCAGGACCTGATCGCAGACGCGAGAGGCCTGGCCTTC
ATCACCTTCGTCAAGGCCGGGCTGTTCGTGACGGCGAGAGTGGGCACGGG
TCTGGTGGTGGCGAGAAGGCCGGACGGGGGGTGGTCCGCGCCCTCGGCCC
TGGGGAGCTTCGGCCTCGGCTGGGGGTTTCAAGTCGGCGGAGAACTGACG
GACGTGGTGATCGTGCTGAACACCACGAGCGCCGTGGAGGCCTTCTCTGG
GACCGGACAGGTATCTCTCGGAACGGAGCTGAGCCTCTCCGTCGGACCCG
TCGGCAGAACTGCCTCAACCGACATCAGGGCCGGTGACGGTGGCGTAGCG
GCTGCCTTTTCGTACGCCCACTCCAAGGGCGTGTTCATCGGGGTGTCTCT
CGAGGCAGCCACCATGGTTACCCGCAAAGACACGAACCGCGATTTCTACG
GGACCAAGGTTTCCGCCCAGGAGCTCCTGCTGGGCGACTTCCCCCCCCCG
AAGGCAGCCGAACCTCTCTACAAAGCCCTCGAGGAGGTGGGAGAATCATG
GCAGACTTGGCACGAGTTTCGTATGATTGTGCGTGGTGCCGTAGTTGTGG
GC
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