mRNA_Ecto-sp13_S_contig1758.5301.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1758.5301.1
Unique NamemRNA_Ecto-sp13_S_contig1758.5301.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1758.5301.1 vs. uniprot
Match: D7G5P4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P4_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 3.690e-64
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 
Query:    1 MPGNKKKNKGANKAKNAPARSNAANKDDLAGLDEILSNPEQMAEAQREAVEASGFKPRSGKQNAQIGLKGFTQATQNPAMFKDAMSMLGDPSXXXXXXXXXXXXEFKSEINQYMETLKNNS 363
            MPGNKKKNKGANKAKNAPARSNAANKDDLAGLDEILSNPEQMAEAQREAVEASGFKPRSGKQNAQIGLKGFTQATQNPAMFKDAMSMLGDPSXXXXXXXXXXXXEFKSEINQYMETLKNNS
Sbjct:    1 MPGNKKKNKGANKAKNAPARSNAANKDDLAGLDEILSNPEQMAEAQREAVEASGFKPRSGKQNAQIGLKGFTQATQNPAMFKDAMSMLGDPSXXXXXXXXXXXXEFKSEINQYMETLKNNS 121
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BLAST of mRNA_Ecto-sp13_S_contig1758.5301.1 vs. uniprot
Match: A0A835YIF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIF9_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.990e-15
Identity = 40/79 (50.63%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:   40 AKNAPARSNAANKDDLAGLDEILSNPEQMAEAQREAVEASGFKPRSGKQNAQIGLKGFTQATQNPAMFKDAMSMLGDPS 276
            +K+   +SNAANK+DL GLDE+L++P  M + + + V  +  K ++G +NA+IG++GF+QAT+NPAMF +AMSML DP+
Sbjct:   11 SKSPTRKSNAANKEDLDGLDELLADPALMKQFEDKTVPPA--KKKTGAENARIGMEGFSQATKNPAMFAEAMSMLSDPN 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1758.5301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5P4_ECTSI3.690e-64100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YIF9_9STRA1.990e-1550.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1758contigEcto-sp13_S_contig1758:12424..15847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size363
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_008620.1
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462914.214096-CDS-Ecto-sp13_S_contig1758:12423..125331681462914.214096-CDS-Ecto-sp13_S_contig1758:12423..12533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1758 12424..12533 +
1681462914.2243092-CDS-Ecto-sp13_S_contig1758:14610..147191681462914.2243092-CDS-Ecto-sp13_S_contig1758:14610..14719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1758 14611..14719 +
1681462914.2336257-CDS-Ecto-sp13_S_contig1758:15703..158471681462914.2336257-CDS-Ecto-sp13_S_contig1758:15703..15847Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1758 15704..15847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1758.5301.1prot_Ecto-sp13_S_contig1758.5301.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1758 12424..15847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1758.5301.1

>prot_Ecto-sp13_S_contig1758.5301.1 ID=prot_Ecto-sp13_S_contig1758.5301.1|Name=mRNA_Ecto-sp13_S_contig1758.5301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
MPGNKKKNKGANKAKNAPARSNAANKDDLAGLDEILSNPEQMAEAQREAV
EASGFKPRSGKQNAQIGLKGFTQATQNPAMFKDAMSMLGDPSAVKEAEAM
MNDPEFKSEINQYMETLKNNS
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mRNA from alignment at Ecto-sp13_S_contig1758:12424..15847+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1758.5301.1 ID=mRNA_Ecto-sp13_S_contig1758.5301.1|Name=mRNA_Ecto-sp13_S_contig1758.5301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3424bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1758:12424..15847+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGGCAACAAGAAGAAGAACAAGGGCGCCAACAAGGCCAAGAATGC
GCCTGCTAGGAGCAACGCCGCTAATAAGGATGACTTGGCCGGGCTTGACG
AGATCTTGAGGTGAGGCAATGCTCGAGGAGCGGAGGCAAGCAGGCACAAC
ATCACGCCCCGAGCTACAGCAAGAGCATGCATCCTTCAACACAACATACA
GCTGCAGCACAGCGGTCGAACCTACTGAGATTCCCCGATACGCATGTGAC
TCTCTCCACATGGGCCACGGTGCACTCTTTGCATGATGCCGAGGGGAATG
ATATCAAGGCGTCGACTGGATGCCGCCCTTAGTGCGTGCGACTCGCGCGC
TCGAACCATCAGCTCGTTTGTAAGCAGTGGGCCTGATCTGCATCTGCTTG
ATGTGTGCAGACGTGCGGACAAAACCGGCTCGTGTATCATACGCTGGTTC
ACGTTCATACACATTTCAATGTCGGTGGCGACTTCTCCGGTCACCTACTG
TAGTGGCCGAAAGGATGCCCCTTTCGAAAAGTACTCTCCTCTATTGCAAT
GGCGGAATTCTTGTCTCTGTAGCTCTGCTTGTAGCATGCACTGCTGTGTA
CCAGTTCTCATCGCACGCTGCTGTTGTGGGTGCATTGTGGGTGCATCCAT
CCCTTGGTTGAAGTCTGTGCTCCGGCTTTGGTGAACGTGCCGACCTACTC
AAGTTTGACCGCTTACATGAGTCTTGTTCTAGTAATAAAAATGTCTCTCA
TGCTTGGTTGAGCATTAAGCAGCATGGTGTTTTGCGATTACCATGGGCTG
CTGTAGAACAAACCAAATACACACCTTCGGCCATGTATACTGCTGTCGGG
TGCTCAGCAGCACCACTACACAGCTATGTAGACAGCAGTGTGTACGGCGG
GAGTACCACCACCAAAAGGGGGCATGCCGGGGGCTCCGTATACTAGGCGT
TACGGCAGTATACCAGGACACAGCAGTACATCCTACCTGTTCTTGACGTG
TTCGGTATCAAGTTTCAATACTGTGCCAAAAGGTGCATTCTCAATCCGCT
TCGTAGGTACTTGCCCCCGTCGGTTATTTGACAGACAGCGTTTGTTTGGG
CAGGCCTCTTTCAATCGCAACCCTTACCGCTGGCCGTTGGGGTGCCGTTC
TCCAGGCGGCTCCGCACTCGTTGTGTCACCGTTTAAACCCCGTGGCATCA
TCCCTGGTGGTGTTTTGTAAGCTTCGACCACTCCCAAAACCATGTACATC
AATCACTACCCCAGATGTGTCGTGCCCTCCGTGAGGTATATTGGCCGCAG
TCGTATCTTCTGCCAGAAACCTGTGGTGGGCGCCAAATACTTGTTTCATT
CACTTGAGGTCATTCAGCCGCTCGAATTTCTCAGGGAGAATCATAAAGGG
GTCGAGATTGAACGATCCACGGTTCCTTTTTGAGCACATGCGATACGAGG
CGCATCCTGGCGACAAACGATTACATCGCGGTTGAGTTGGGGGGAGGGGG
GTGGGCATCGTCACCGACTCTCACCGCATCCACAACTCATGATTTGTGTA
ATTTACCTCTCTCCGTTTTATGTCTGAGAGCATCTGAGAGCATGGGATGA
TGAACCAGGTGGCAGCAGTGCACACCGAGAAACGTGAAAGCATTTTCAGA
CTTGAAGCTGGCTGGCAACCTCTGCATTTTAGGAGCTGATTTCGACCGCT
GAATCCCTGATTCCGCTTCGCACCACGTTTCCTTATGCCATTTGTGTGGT
GGGCCCGGTGGACAACCTCGCTCGAAGAACAATTGCCGGCGGTCCGGAGA
AGTGTAGCAACCTACGATACTCACGTGTTTAGCGGCAACGATTGAGCGCG
ACAGAAAAATCGGTTTGCCGTGGAAGGAGGCGGTTAGAAGGTTGGGTCGA
AACGACACCGGCAGAAGAACATCACGGAGTTTCATCGTTAACGCCCTACG
GACCGCTCCGGTCGAAGCTACAAATCTTTCTACGCATATTCTCACGGTTG
ACTCTTTGGGCAAAAACTCTTCTCTTCTCTTGTCAACACGTCATCGGCGA
AGAAGAAACAGCGGTGTGGCCCTCGAACAGTGTAGACTGGGTAATGTTGG
CGTTACTTCCCGCTCTCGACTGCAGCTGCAGCTCCTTACCCCCCTCCTCT
ATCCTCCGGCCTGCTGTGCCGTCTGCTCTGTACTCAGTAACCCGGAGCAA
ATGGCGGAGGCGCAAAGAGAGGCGGTGGAAGCGAGCGGCTTCAAGCCGCG
CTCGGGCAAGCAGAACGCCCAGATCGGCCTCAAGGGCTTCACCCAGGTGA
ATTACTTCGCAGGAGGCTGAAGTTGGTTGTGACGAAACGTTTGGACTACC
ACCCTGTCCGATTTGTGTATTGTATACCGCGGCAAGACTTGGTGGTGCTG
GTGTGAAGGCATACAGAGTGCGCTAGCACCTAAGAACCTCTTGTTTCGCA
CAATGTTCGGTTCTTGTTTCCTCTGCCAAGTAAACAAGCCAACAGCGAAT
GTAACACTGGTAGGTTTCAGTGTAGGATACTTAACGTAACTCCTGGTAAG
ACTCAAGAAAATACGTCCTGTTTTTTTTAAGCCTGAATTACTTGTCTCCA
AGTTTGTTGAGGTGGTGGGGCGTACTGTGAGAGCATGAACAGGTTATTAC
GTCCTTTCGTTACGATCTATTGACAGCACTACCTACCCATATACATGTGC
CGTACATTGACGACGAGCCGATTCGGCCTACGTTACTGTGCCCCGACTTA
GCTTGCCGGTGGAGTGCGACTCGCGAAGCCATGGATGGAATAGAGGCAGG
TGTAACCCTCATGCTTGATGGACTCCTGTTGTCCGGAAGACGTGGGGCAT
GGACGACCGCCAGCGATCAAACTTCATCCAATTTGTTTTGCCATGTACTC
GGTAGTAGGTTTAGATGCGCAAGAATACTTGCCCGTCACGAACGGCGTTG
GATTCGGCCACATGCAAAGCAAATGCACATACACACCCGAAAACAAACGC
GCGCATCCACTTCGATCTTGGGTGTTTTCGTCTTCGGTCCGGGCCTGCGT
TGACCGCTCTGTCATGGAGCCTTTGCAAAACTCGGTTGAAAAATGTTTGA
AGGACTTTTTTCCGGTGTGTGCGCGTGTGTGTTTCGTTTCGTGTGCTATA
TTTGTGTCCGATGGTAGGTGTCCACGAATCGCAGTTGTCCTCTCCGGTGT
CATTTGTTTGTTTCGAGTCATGACAACACGCATGACAAACAGCATCAACA
CCAACTCCAACACCATCACCCCGACAACAGGCGACCCAGAACCCGGCAAT
GTTCAAGGACGCGATGAGCATGCTAGGGGACCCGTCGGCGGTGAAGGAAG
CGGAGGCGATGATGAACGACCCGGAGTTCAAGTCGGAGATCAACCAGTAC
ATGGAGACGCTTAAGAACAACTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1758:12424..15847+

>mRNA_Ecto-sp13_S_contig1758.5301.1 ID=mRNA_Ecto-sp13_S_contig1758.5301.1|Name=mRNA_Ecto-sp13_S_contig1758.5301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1758:12424..15847+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGGCAACAAGAAGAAGAACAAGGGCGCCAACAAGGCCAAGAATGC
GCCTGCTAGGAGCAACGCCGCTAATAAGGATGACTTGGCCGGGCTTGACG
AGATCTTGAGTAACCCGGAGCAAATGGCGGAGGCGCAAAGAGAGGCGGTG
GAAGCGAGCGGCTTCAAGCCGCGCTCGGGCAAGCAGAACGCCCAGATCGG
CCTCAAGGGCTTCACCCAGGCGACCCAGAACCCGGCAATGTTCAAGGACG
CGATGAGCATGCTAGGGGACCCGTCGGCGGTGAAGGAAGCGGAGGCGATG
ATGAACGACCCGGAGTTCAAGTCGGAGATCAACCAGTACATGGAGACGCT
TAAGAACAACTCG
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