mRNA_Ecto-sp13_S_contig100324.53.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig100324.53.1
Unique NamemRNA_Ecto-sp13_S_contig100324.53.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100324.53.1 vs. uniprot
Match: D7FJS7_ECTSI (MAP kinase phosphatase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS7_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 2.410e-26
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 GRFNFLRLNFYDHRTEDCAWFMYQAFDFMKAAEEQRGRVLVHCVQGVSR 147
            GRFNFLRLNFYDHRTEDCAWFMY+AFDFMKAAEEQRGRVLVHCVQGVSR
Sbjct:   76 GRFNFLRLNFYDHRTEDCAWFMYKAFDFMKAAEEQRGRVLVHCVQGVSR 124
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BLAST of mRNA_Ecto-sp13_S_contig100324.53.1 vs. uniprot
Match: A0A6H5L2L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L8_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 4.810e-26
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 GRFNFLRLNFYDHRTEDCAWFMYQAFDFMKAAEEQRGRVLVHCVQGVSR 147
            GRFNFLRLNFYDHRTEDCAWFMYQAFDFMKAAEEQRGRVLVHCVQGVSR
Sbjct:  196 GRFNFLRLNFYDHRTEDCAWFMYQAFDFMKAAEEQRGRVLVHCVQGVSR 244
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BLAST of mRNA_Ecto-sp13_S_contig100324.53.1 vs. uniprot
Match: A0A7S2V0L7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0L7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.940e-8
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:   13 FLRLNFYDHRTEDCAWFMYQAFDFMKAAEEQRGRVLVHCVQGVSR 147
            +L  N +D + ED   F+YQ+FDF+++  E  GRVLVHCV+GVSR
Sbjct:  131 YLSFNLFDSKMEDITCFLYQSFDFIESCREAGGRVLVHCVEGVSR 175
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BLAST of mRNA_Ecto-sp13_S_contig100324.53.1 vs. uniprot
Match: A0A7S2WVL7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVL7_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.470e-6
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:   13 FLRLNFYDHRT--EDCAWFMYQAFDFMKAAEEQRGRVLVHCVQGVSR 147
            + +LN YD +   ED +WF+YQ  D +    +  G+VLVHCVQGVSR
Sbjct:  260 YTKLNMYDSKDGEEDISWFVYQVIDVIDQVRQAGGKVLVHCVQGVSR 306
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BLAST of mRNA_Ecto-sp13_S_contig100324.53.1 vs. uniprot
Match: A0A498KLG7_MALDO (Uncharacterized protein n=7 Tax=Maleae TaxID=721813 RepID=A0A498KLG7_MALDO)

HSP 1 Score: 49.3 bits (116), Expect = 1.920e-5
Identity = 22/38 (57.89%), Postives = 25/38 (65.79%), Query Frame = 1 
Query:   34 DHRTEDCAWFMYQAFDFMKAAEEQRGRVLVHCVQGVSR 147
            D  TED    +Y  FD+ +   EQRGRVLVHC QGVSR
Sbjct:  204 DSPTEDITSILYDVFDYFEDVREQRGRVLVHCCQGVSR 241
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BLAST of mRNA_Ecto-sp13_S_contig100324.53.1 vs. uniprot
Match: A0A830HCY9_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HCY9_9CHLO)

HSP 1 Score: 47.8 bits (112), Expect = 6.700e-5
Identity = 24/49 (48.98%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:    1 GRFNFLRLNFYDHRTEDCAWFMYQAFDFMKAAEEQRGRVLVHCVQGVSR 147
            G+  +  L   D   ED A  +Y  FDF+++A   RGRVLVHC QGVSR
Sbjct:  259 GKLAYKTLWLQDSPGEDIASVLYPCFDFIESARASRGRVLVHCSQGVSR 307
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BLAST of mRNA_Ecto-sp13_S_contig100324.53.1 vs. uniprot
Match: A0A1D6LHJ1_MAIZE (Protein-tyrosine-phosphatase MKP1 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6LHJ1_MAIZE)

HSP 1 Score: 47.8 bits (112), Expect = 6.730e-5
Identity = 21/38 (55.26%), Postives = 24/38 (63.16%), Query Frame = 1 
Query:   34 DHRTEDCAWFMYQAFDFMKAAEEQRGRVLVHCVQGVSR 147
            D  TED    +Y  FD+ +   EQRGRV VHC QGVSR
Sbjct:  199 DSPTEDITSILYDVFDYFEDVREQRGRVFVHCCQGVSR 236
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BLAST of mRNA_Ecto-sp13_S_contig100324.53.1 vs. uniprot
Match: A0A4D9AMJ3_SALSN (Atypical dual specificity phosphatase n=6 Tax=Salvia TaxID=21880 RepID=A0A4D9AMJ3_SALSN)

HSP 1 Score: 47.8 bits (112), Expect = 6.740e-5
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:   34 DHRTEDCAWFMYQAFDFMKAAEEQRGRVLVHCVQGVSR 147
            D  +ED    +Y  FD+ +  +EQRGRVLVHC QGVSR
Sbjct:  190 DCPSEDITSILYDVFDYFEDVQEQRGRVLVHCFQGVSR 227
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BLAST of mRNA_Ecto-sp13_S_contig100324.53.1 vs. uniprot
Match: A0A4D9C1F1_SALSN (Atypical dual specificity phosphatase n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9C1F1_SALSN)

HSP 1 Score: 47.8 bits (112), Expect = 6.760e-5
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:   34 DHRTEDCAWFMYQAFDFMKAAEEQRGRVLVHCVQGVSR 147
            D  +ED    +Y  FD+ +  +EQRGRVLVHC QGVSR
Sbjct:  207 DCPSEDITSILYDVFDYFEDVQEQRGRVLVHCFQGVSR 244
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100324.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FJS7_ECTSI2.410e-2697.96MAP kinase phosphatase 1 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L2L8_9PHAE4.810e-26100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V0L7_9STRA4.940e-853.33Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2WVL7_9STRA5.470e-648.94Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A498KLG7_MALDO1.920e-557.89Uncharacterized protein n=7 Tax=Maleae TaxID=72181... [more]
A0A830HCY9_9CHLO6.700e-548.98Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
A0A1D6LHJ1_MAIZE6.730e-555.26Protein-tyrosine-phosphatase MKP1 n=1 Tax=Zea mays... [more]
A0A4D9AMJ3_SALSN6.740e-555.26Atypical dual specificity phosphatase n=6 Tax=Salv... [more]
A0A4D9C1F1_SALSN6.760e-555.26Atypical dual specificity phosphatase n=1 Tax=Salv... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100324contigEcto-sp13_S_contig100324:325..474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score106.3
Seed ortholog evalue4.2e-21
Seed eggNOG ortholog2880.D7FJS7
Model size150
KEGG koko:K04459,ko:K21278
KEGG Pathwayko04010,ko04726,ko05418,map04010,map04726,map05418
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG1716@2759
Ec32 ortholog descriptionProtein-tyrosine phosphatase-like
Ec32 orthologEc-06_010330.1
EC3.1.3.16,3.1.3.48
Cds size150
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462501.8677764-CDS-Ecto-sp13_S_contig100324:324..4741681462501.8677764-CDS-Ecto-sp13_S_contig100324:324..474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig100324 325..474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100324.53.1prot_Ecto-sp13_S_contig100324.53.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig100324 325..474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig100324.53.1

>prot_Ecto-sp13_S_contig100324.53.1 ID=prot_Ecto-sp13_S_contig100324.53.1|Name=mRNA_Ecto-sp13_S_contig100324.53.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
GRFNFLRLNFYDHRTEDCAWFMYQAFDFMKAAEEQRGRVLVHCVQGVSR*
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mRNA from alignment at Ecto-sp13_S_contig100324:325..474+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100324.53.1 ID=mRNA_Ecto-sp13_S_contig100324.53.1|Name=mRNA_Ecto-sp13_S_contig100324.53.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100324:325..474+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCGGTTCAACTTCTTGCGGCTGAACTTCTACGACCACCGAACGGAGGA
CTGTGCGTGGTTTATGTACCAGGCCTTTGACTTCATGAAGGCCGCGGAGG
AGCAAAGAGGAAGGGTGCTGGTGCACTGCGTGCAAGGGGTTTCCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100324:325..474+

>mRNA_Ecto-sp13_S_contig100324.53.1 ID=mRNA_Ecto-sp13_S_contig100324.53.1|Name=mRNA_Ecto-sp13_S_contig100324.53.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100324:325..474+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCGGTTCAACTTCTTGCGGCTGAACTTCTACGACCACCGAACGGAGGA
CTGTGCGTGGTTTATGTACCAGGCCTTTGACTTCATGAAGGCCGCGGAGG
AGCAAAGAGGAAGGGTGCTGGTGCACTGCGTGCAAGGGGTTTCCAGGTGA
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