mRNA_Ecto-sp13_S_contig17577.5297.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17577.5297.1
Unique NamemRNA_Ecto-sp13_S_contig17577.5297.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17577.5297.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 1.490e-54
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:  343 AEGDGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSDDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEV 615
            AEGDGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDS+DRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFE+
Sbjct:    4 AEGDGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEI 94
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BLAST of mRNA_Ecto-sp13_S_contig17577.5297.1 vs. uniprot
Match: D7FJ38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ38_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 4.330e-32
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:   16 GDCGNGVAGIVSGDSCCAESCGTCGGVGCSGREGGAMSCCTSAIEGVGVLCETTSAGPCRISSA 207
            GDCGNGVAGIVSG SCCAESCGTCGGVGC GREGGAMSCCTSAIEG GVLC+TTSAGPCRIS+A
Sbjct:   21 GDCGNGVAGIVSGGSCCAESCGTCGGVGCGGREGGAMSCCTSAIEGAGVLCDTTSAGPCRISTA 84
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BLAST of mRNA_Ecto-sp13_S_contig17577.5297.1 vs. uniprot
Match: D7FZV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV1_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 4.660e-30
Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:   16 GDCGNGVAGIVSGDSCCAESCGTCGGVGCSGREGGAMSCCTSAIEGVGVLCETTSAGPCRISSA 207
            GDCGNGVAGIVSG SCCAESCGTCGGVGCSGREGGAMSCCTSAIE  GVLC+TTSAGPC IS A
Sbjct:   21 GDCGNGVAGIVSGGSCCAESCGTCGGVGCSGREGGAMSCCTSAIERAGVLCDTTSAGPCWISYA 84
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BLAST of mRNA_Ecto-sp13_S_contig17577.5297.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 7.140e-18
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:  346 EGDGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSDDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEV 615
            + +G GCFT++DLY ++   ++G++KGP+F LD            + KWLLTA+L +TGGA  YCRG  +GG+C ELRI+ST  +DF EV
Sbjct:   81 DAEGEGCFTITDLYNFR-LESDGSAKGPIFNLDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEV 169
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BLAST of mRNA_Ecto-sp13_S_contig17577.5297.1 vs. uniprot
Match: D7FHN7_ECTSI (von Willebrand A domain containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN7_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 3.270e-10
Identity = 50/136 (36.76%), Postives = 66/136 (48.53%), Query Frame = 1 
Query:    1 PQTETGDCGNGVAGIVS--GDSCCAESCGTCGGVGCSGREGGAMSCCTSAIEGVGVLCETTSAGPCRISSADLVPATLTTLESTSPTPVPTIPDSCTEANPPFRWNPDTGLNGRLYAEGDGGGCFTLS-DLYAWQG 399
            P ++   C NGV GI S  G +CCA +CG+CGGVGCSGR GG+  CC S I   G  C  T A PC I   ++       L+   P+  P +P+   E + P                G GGG ++ S D  +W G
Sbjct:  100 PISDIERCSNGVYGIESSNGKACCALTCGSCGGVGCSGRPGGSYDCCESEIVEEGEACAATGASPCYIDGDEV-------LDPVVPSMSPVVPE---ETDMP---------------SGFGGGSYSYSYDFVSWDG 210
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BLAST of mRNA_Ecto-sp13_S_contig17577.5297.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.480e-9
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   22 CGNGVAGIVSGDSCCAESCGTCGGVGCSGREGGAMSCCTSAIEGVGVLCETTSAGPCRISSA 207
            C  G+ GI S D CC+ SCG+CGG GCSGR+GG+ SCC   + G G  C  T   PC   +A
Sbjct:  320 CDGGIVGIQSSDVCCSASCGSCGGSGCSGRDGGSESCCGGGVRGSGRYCSVTGEAPCMTGAA 381
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BLAST of mRNA_Ecto-sp13_S_contig17577.5297.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.740e-9
Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:    1 PQTETGDCGNGVAGIVSGDSCCAESCGTCGGVGCSGREGGAMSCCTSAIEGVGVLCETTSAGPCRISSADL-VPATLTTLESTSPT 255
            P +E   C  G+ GI + + CC+ SCG+CGGVGCSGR+GG+ +CC   +   G LC  T   PC    A    P+   T+E  +PT
Sbjct:  132 PTSEVPMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSDACCGGGVTASGRLCSVTGEAPCITGPAPTPAPSPPXTVEGPAPT 217
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BLAST of mRNA_Ecto-sp13_S_contig17577.5297.1 vs. uniprot
Match: A0A6H5JVK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK3_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.520e-9
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:   22 CGNGVAGIVSGDSCCAESCGTCGGVGCSGREGGAMSCCTSAIEGVGVLCETTSAGPCRISSA 207
            C  G+ GI + D CC+ SCG+CGG GCSGR+GG+ +CC   +   G  C  T   PC    A
Sbjct:    2 CDGGIVGIQASDVCCSASCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPCMTGPA 63
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BLAST of mRNA_Ecto-sp13_S_contig17577.5297.1 vs. uniprot
Match: A0A6H5K8Q7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Q7_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.810e-9
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:   22 CGNGVAGIVSGDSCCAESCGTCGGVGCSGREGGAMSCCTSAIEGVGVLCETTSAGPCRISSA 207
            C   + GI S D CC+ SCG+CGG GC+GR+GG+ SCC   +   G  C  T   PC   +A
Sbjct:    2 CDGDIVGIQSSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCMTGAA 63
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BLAST of mRNA_Ecto-sp13_S_contig17577.5297.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 6.790e-9
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    4 QTETGDCGNGVAGIVSGDSCCAESCGTCGGVGCSGREGGAMSCCTSAIEGVGVLCETTSAGPC 192
            Q E   C  G+ GI S D CC+ SCG+CGG GC+GR+GGA +CC   +   G  C  T   PC
Sbjct:   47 QAEVPTCDGGIVGIQSSDVCCSLSCGSCGGTGCTGRDGGADACCGGGVRSSGRFCSVTGEAPC 109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17577.5297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRR8_ECTSI1.490e-5497.80Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FJ38_ECTSI4.330e-3292.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZV1_ECTSI4.660e-3090.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRM4_ECTSI7.140e-1847.78Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7FHN7_ECTSI3.270e-1036.76von Willebrand A domain containing protein n=2 Tax... [more]
D7G4E0_ECTSI1.480e-950.00N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5JWJ0_9PHAE1.740e-941.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVK3_9PHAE5.520e-945.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8Q7_9PHAE5.810e-945.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVC9_9PHAE6.790e-947.62AMOP domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17577contigEcto-sp13_S_contig17577:567..3326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score114.8
Seed ortholog evalue4.9e-23
Seed eggNOG ortholog2880.D8LC73
Model size615
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Cds size615
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462913.8874063-CDS-Ecto-sp13_S_contig17577:566..7741681462913.8874063-CDS-Ecto-sp13_S_contig17577:566..774Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17577 567..774 +
1681462913.9070215-CDS-Ecto-sp13_S_contig17577:1062..11941681462913.9070215-CDS-Ecto-sp13_S_contig17577:1062..1194Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17577 1063..1194 +
1681462913.9168696-CDS-Ecto-sp13_S_contig17577:2272..24581681462913.9168696-CDS-Ecto-sp13_S_contig17577:2272..2458Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17577 2273..2458 +
1681462913.927007-CDS-Ecto-sp13_S_contig17577:3237..33261681462913.927007-CDS-Ecto-sp13_S_contig17577:3237..3326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17577 3238..3326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17577.5297.1prot_Ecto-sp13_S_contig17577.5297.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17577 567..3326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17577.5297.1

>prot_Ecto-sp13_S_contig17577.5297.1 ID=prot_Ecto-sp13_S_contig17577.5297.1|Name=mRNA_Ecto-sp13_S_contig17577.5297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=205bp
PQTETGDCGNGVAGIVSGDSCCAESCGTCGGVGCSGREGGAMSCCTSAIE
GVGVLCETTSAGPCRISSADLVPATLTTLESTSPTPVPTIPDSCTEANPP
FRWNPDTGLNGRLYAEGDGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSD
DRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGS
DFFEV
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mRNA from alignment at Ecto-sp13_S_contig17577:567..3326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17577.5297.1 ID=mRNA_Ecto-sp13_S_contig17577.5297.1|Name=mRNA_Ecto-sp13_S_contig17577.5297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2760bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17577:567..3326+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCAAACTGAAACAGGAGACTGCGGCAACGGTGTCGCTGGTATCGTGAG
CGGTGACTCATGTTGTGCTGAGTCCTGCGGCACTTGCGGAGGAGTGGGGT
GCAGCGGTCGTGAGGGCGGAGCAATGTCGTGTTGCACGTCAGCCATCGAG
GGCGTAGGCGTCTTGTGCGAAACCACGTCCGCGGGGCCGTGCCGGATCTC
GTCTGCCGGTGATGACTAGATGATCGTATGCAACATACATGCAGTCCTTC
TGGTCTGTGTCCTCAATGTACCATACTGTGGGGTTCTTGGGGTCAACGCC
GGCTATTCATCCACATCACTTTTGCGTCGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTCTTGCTGCTGTTGCGAGCCAAACCATTTGGTTC
AAAGGCACGGAGTTCGTAATAAAATGTTCACCAACATACGTTTCGCACAC
GTCATGCGTCTGCCGTTTCGCCATGTGCTCTGCCGTCAACCGCCAGATCT
TGTTCCAGCAACACTGACAACACTGGAGTCCACATCGCCAACACCTGTTC
CAACTATCCCGGACTCGTGTACTGAAGCCAATCCCCCTTTCCGATGGAAC
CCGGACACCGGCCTCAATGGACGTCTGTGTGAGTGCATGCCATGCACCTT
GCGACCTCACGTTGCTCGCTCGAGTCGAAGTTTGACTGTGTCGGTTAGAC
TTTGTCGGCATGACTGCCTTCCCTGGTGTCTGGAGCGGCGTTGCTTCGCG
GGAGAGATGACTGAGTTCCGTGCAGCCTCGCTAGTTTACCCATTCTTCCG
TACGATACTTTCTTTCCAAACGCCAGTGTATGGTATGTCAGCACGTTCAG
CGTTTTGACAGTGTAGTCTTCCGTATGGGGATTGCGGTTTTGGAGGCATC
GGACCAGAAGGCATGCATGGCACTCCGAGAGTGCGTGCAGCGGCTGTAAC
AGTAGTGCGATCAATCCCTCCAACGTCTCTCGGCTTGGTTCAAGGAACGT
TCCTTGTTGGGCCCAATCTGTCGATGGACTAAAATACTCATGTTATTCTA
CGTATTGTAAGCACTCGCTCTTCAGTCATCTAGACACCGTTATTGCGAGG
CCGTTGCCGCTGCGACATATCGTTTGCTTGCTATGGGTTTTGCCGCGACT
TTCCTACCGACTATGTAGTCTCACACCAACCTCACCCACTCCGCGAAATA
TTCTGCAGCCGTAGAAGCTGCAAGTACAAGTAACTTTTTGCGGAGCCCCC
TGTACATACTCCTTTCATTTATAGACCACGAGATGCACATAATGTACAAT
GACATAACTGGCTGGAGAGCTCTCGTTCAGAAATTTTGCGGTTGCAACGT
CTGTCGAGGGCCATCAATTATCTTTTTTCCGTGTTGCTCGGTTGGTCCCG
CTGAGCATTCCTCCTCACATACTATCACGAGGAGAAATATGTAGCGAACC
TCTTGTAGCCGGCACGTACGTCCGAGTCTAGTGGGGTCGGTGAGGGTAAG
TAGACGTGGAGGACTCCAGGGTACCTGATGAGGTTACACATGTACTACTG
CTTTTTGCTCTCGACTCCGGCCTCACGGCCGTGGCTTCCGCAGCACATGC
AAGAGATGTTCACACGTTGTCCTCCCGACCGCCCCAATGTTTCGGACGGA
CGCCTGTTTCGTCGTAATACTGTAATATCAATGGAATGCTGTGATATTCT
TTGTAGATGCGGAGGGCGACGGCGGGGGCTGCTTCACCCTGTCAGACCTG
TATGCCTGGCAAGGGTTTTACAACAACGGCAACTCCAAGGGCCCCGTGTT
TGTCTTGGACAGCGACGACAGGGTCGACGAAACGGCCACCACCACAACGG
GAAAGTGGCTCCTCACGGCAGACCTGTTCGTCACCGGTGGAGGTATGGAA
TGGCCTGTAGCCTACAGACTACCCTAGACTGCTGAATGTGTAGGCTTAGT
TTCTTTGCTGAAGCACGTGTCGACTGTTTCGTCTCTTTTCCCGCCATGCG
TAAGTGGTTCTTGGGTTTTGATGCGTGCCCGCCCACGCGACTCTTTCGAC
TACATGACTTTGTATGTAGCTGAGTAAGATGAAGGGTCGTTCTTGCGGAA
TTCCGTGTGCTTGAGGGTTGAGGGTATGGAGATCATGTGAGGAGGCGGGT
GGAACGGCTTGATTTTTCTCGACGCGCTCTCTCCGAAAGTGATGGATCGT
ATATCGTTCTATTGTGGTGTTGACGTTTGACTTCTTCAAGAGTCCAACCG
CTCCTTCTCGTGCCTGATACAGGTGAATATTGTCTACCGTAGAAACGGTT
GAGGGGAGGACACGTCTATCCACGTTCTGAGACAGTTGGTGAAGGACTTT
AGTTCGAGCGCACTGCGATTGGTGCATCTTCACTCCTCTCAAATGCATGT
TGGCGTCTACGGATGAATATCGACGTTTTTTTTTAGGAACAGTGAACGGG
ATCAGCGAGAGAGATCATACACATGTTCGCGCAGTGATTCCAGCCAGCTT
CTTGTACTTTGCGATACGGTACAATATCGGAGTTATACCAGCTGACTGAA
AAAAGGGAAGGGTGCAGGTGGCAAGATGGGTACGCGCCGTTTGGCATGTT
GCACAACTTTTTGTCCCCGCAAGAGTGAGTGACACTCTATCGCTCGTTCG
CCGTGTCATGTGCTGTTGCAGCTACGCTTTATTGCCGTGGTAAGGGCGTC
GGGGGGAACTGTGCCGAACTCCGCATCCGGTCAACGAGTGGAAGCGACTT
CTTCGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17577:567..3326+

>mRNA_Ecto-sp13_S_contig17577.5297.1 ID=mRNA_Ecto-sp13_S_contig17577.5297.1|Name=mRNA_Ecto-sp13_S_contig17577.5297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17577:567..3326+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCAAACTGAAACAGGAGACTGCGGCAACGGTGTCGCTGGTATCGTGAG
CGGTGACTCATGTTGTGCTGAGTCCTGCGGCACTTGCGGAGGAGTGGGGT
GCAGCGGTCGTGAGGGCGGAGCAATGTCGTGTTGCACGTCAGCCATCGAG
GGCGTAGGCGTCTTGTGCGAAACCACGTCCGCGGGGCCGTGCCGGATCTC
GTCTGCCGATCTTGTTCCAGCAACACTGACAACACTGGAGTCCACATCGC
CAACACCTGTTCCAACTATCCCGGACTCGTGTACTGAAGCCAATCCCCCT
TTCCGATGGAACCCGGACACCGGCCTCAATGGACGTCTGTATGCGGAGGG
CGACGGCGGGGGCTGCTTCACCCTGTCAGACCTGTATGCCTGGCAAGGGT
TTTACAACAACGGCAACTCCAAGGGCCCCGTGTTTGTCTTGGACAGCGAC
GACAGGGTCGACGAAACGGCCACCACCACAACGGGAAAGTGGCTCCTCAC
GGCAGACCTGTTCGTCACCGGTGGAGCTACGCTTTATTGCCGTGGTAAGG
GCGTCGGGGGGAACTGTGCCGAACTCCGCATCCGGTCAACGAGTGGAAGC
GACTTCTTCGAGGTG
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