prot_Ecto-sp13_S_contig17569.5290.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17569.5290.1
Unique Nameprot_Ecto-sp13_S_contig17569.5290.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length279
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17569.5290.1 vs. uniprot
Match: D8LM40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM40_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 1.210e-73
Identity = 133/188 (70.74%), Postives = 142/188 (75.53%), Query Frame = 0 
Query:   91 MLFQWQKASADSGSTTIRVVLLSVLFNIISYSWKIMTAVGVISDVVSAWWDARLFFPLTEGFMILPTAIVISVWMDVANSSLSRLKSKTKLARTKKALQLGTATHVALLLLICIFGHLELAMTVQLGAIGLGLTACGSGAAKLCHTLRGLGENSANIADNVFRVSRAMGISLYGVFIGETMLLSSRTR 278
            MLFQ Q+AS DSGSTTIRVVL SVL +I  Y+WKI+TA G+ISD VSA W+ARLFFPLTEGF+ILPTAIVISVWMDVANSSLSRLK                                  AMTVQL A+GLGLTACGSGAAKLCHTLRGLGENSANIAD VF+VSRAMGISLYGVFIG TMLLSSRTR
Sbjct:    1 MLFQRQEAS-DSGSTTIRVVLFSVLLDISCYAWKILTAAGMISDYVSASWNARLFFPLTEGFLILPTAIVISVWMDVANSSLSRLK----------------------------------AMTVQLCAVGLGLTACGSGAAKLCHTLRGLGENSANIADTVFKVSRAMGISLYGVFIGNTMLLSSRTR 153
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BLAST of mRNA_Ecto-sp13_S_contig17569.5290.1 vs. uniprot
Match: A0A6H5KG93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG93_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.800e-29
Identity = 62/67 (92.54%), Postives = 62/67 (92.54%), Query Frame = 0 
Query:  212 MTVQLGAIGLGLTACGSGAAKLCHTLRGLGENSANIADNVFRVSRAMGISLYGVFIGETMLLSSRTR 278
            MTVQLGAIGLGLTACGSGAAKLCHTLR LGENSA IA  VFRVSRAMGISLYGVFIGE MLLSSRTR
Sbjct:    1 MTVQLGAIGLGLTACGSGAAKLCHTLRDLGENSAIIAHTVFRVSRAMGISLYGVFIGEAMLLSSRTR 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17569.5290.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM40_ECTSI1.210e-7370.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KG93_9PHAE2.800e-2992.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..70
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 71..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..132
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 133..143
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 168..186
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 235..278
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 187..208
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 209..213
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..45
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 214..234
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 144..167
NoneNo IPR availableTMHMMTMhelixcoord: 109..131
NoneNo IPR availableTMHMMTMhelixcoord: 46..68
NoneNo IPR availableTMHMMTMhelixcoord: 186..208
NoneNo IPR availableTMHMMTMhelixcoord: 151..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17569contigEcto-sp13_S_contig17569:1162..3644 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17569.5290.1mRNA_Ecto-sp13_S_contig17569.5290.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17569 991..3644 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17569.5290.1 ID=prot_Ecto-sp13_S_contig17569.5290.1|Name=mRNA_Ecto-sp13_S_contig17569.5290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=279bp
MEEVSTSAVCEYTTECEGVGFQCIDRRCMCNPLWAHAGPNCDELRWASWG
LVVVLTLVSIFSVAVLATAAKSLKRASSLKCGSGLLQLGSMLFQWQKASA
DSGSTTIRVVLLSVLFNIISYSWKIMTAVGVISDVVSAWWDARLFFPLTE
GFMILPTAIVISVWMDVANSSLSRLKSKTKLARTKKALQLGTATHVALLL
LICIFGHLELAMTVQLGAIGLGLTACGSGAAKLCHTLRGLGENSANIADN
VFRVSRAMGISLYGVFIGETMLLSSRTR*
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