mRNA_Ecto-sp13_S_contig17569.5290.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17569.5290.1
Unique NamemRNA_Ecto-sp13_S_contig17569.5290.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17569.5290.1 vs. uniprot
Match: D8LM40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM40_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 8.340e-73
Identity = 133/188 (70.74%), Postives = 142/188 (75.53%), Query Frame = 1 
Query:  442 MLFQWQKASADSGSTTIRVVLLSVLFNIISYSWKIMTAVGVISDVVSAWWDARLFFPLTEGFMILPTAIVISVWMDVANSSLSRLKSKTKLARTKKALQLGTATHVALLLLICIFGHLELAMTVQLGAIGLGLTACGSGAAKLCHTLRGLGENSANIADNVFRVSRAMGISLYGVFIGETMLLSSRTR 1005
            MLFQ Q+AS DSGSTTIRVVL SVL +I  Y+WKI+TA G+ISD VSA W+ARLFFPLTEGF+ILPTAIVISVWMDVANSSLSRLK                                  AMTVQL A+GLGLTACGSGAAKLCHTLRGLGENSANIAD VF+VSRAMGISLYGVFIG TMLLSSRTR
Sbjct:    1 MLFQRQEAS-DSGSTTIRVVLFSVLLDISCYAWKILTAAGMISDYVSASWNARLFFPLTEGFLILPTAIVISVWMDVANSSLSRLK----------------------------------AMTVQLCAVGLGLTACGSGAAKLCHTLRGLGENSANIADTVFKVSRAMGISLYGVFIGNTMLLSSRTR 153
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BLAST of mRNA_Ecto-sp13_S_contig17569.5290.1 vs. uniprot
Match: A0A6H5KG93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG93_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.040e-28
Identity = 62/67 (92.54%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:  805 MTVQLGAIGLGLTACGSGAAKLCHTLRGLGENSANIADNVFRVSRAMGISLYGVFIGETMLLSSRTR 1005
            MTVQLGAIGLGLTACGSGAAKLCHTLR LGENSA IA  VFRVSRAMGISLYGVFIGE MLLSSRTR
Sbjct:    1 MTVQLGAIGLGLTACGSGAAKLCHTLRDLGENSAIIAHTVFRVSRAMGISLYGVFIGEAMLLSSRTR 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17569.5290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM40_ECTSI8.340e-7370.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KG93_9PHAE1.040e-2892.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17569contigEcto-sp13_S_contig17569:991..3644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1008
Hectar predicted targeting categorysignal anchor
Exons6
Cds size837
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17569.5290.1prot_Ecto-sp13_S_contig17569.5290.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17569 1162..3644 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462913.4092252-UTR-Ecto-sp13_S_contig17569:990..11611681462913.4092252-UTR-Ecto-sp13_S_contig17569:990..1161Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17569 991..1161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462913.4183993-CDS-Ecto-sp13_S_contig17569:1161..12411681462913.4183993-CDS-Ecto-sp13_S_contig17569:1161..1241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17569 1162..1241 +
1681462913.430464-CDS-Ecto-sp13_S_contig17569:1485..17031681462913.430464-CDS-Ecto-sp13_S_contig17569:1485..1703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17569 1486..1703 +
1681462913.4424372-CDS-Ecto-sp13_S_contig17569:1991..22211681462913.4424372-CDS-Ecto-sp13_S_contig17569:1991..2221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17569 1992..2221 +
1681462913.4549005-CDS-Ecto-sp13_S_contig17569:2725..28931681462913.4549005-CDS-Ecto-sp13_S_contig17569:2725..2893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17569 2726..2893 +
1681462913.467969-CDS-Ecto-sp13_S_contig17569:3110..32011681462913.467969-CDS-Ecto-sp13_S_contig17569:3110..3201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17569 3111..3201 +
1681462913.4857142-CDS-Ecto-sp13_S_contig17569:3594..36441681462913.4857142-CDS-Ecto-sp13_S_contig17569:3594..3644Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17569 3595..3644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17569.5290.1

>prot_Ecto-sp13_S_contig17569.5290.1 ID=prot_Ecto-sp13_S_contig17569.5290.1|Name=mRNA_Ecto-sp13_S_contig17569.5290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=279bp
MEEVSTSAVCEYTTECEGVGFQCIDRRCMCNPLWAHAGPNCDELRWASWG
LVVVLTLVSIFSVAVLATAAKSLKRASSLKCGSGLLQLGSMLFQWQKASA
DSGSTTIRVVLLSVLFNIISYSWKIMTAVGVISDVVSAWWDARLFFPLTE
GFMILPTAIVISVWMDVANSSLSRLKSKTKLARTKKALQLGTATHVALLL
LICIFGHLELAMTVQLGAIGLGLTACGSGAAKLCHTLRGLGENSANIADN
VFRVSRAMGISLYGVFIGETMLLSSRTR*
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mRNA from alignment at Ecto-sp13_S_contig17569:991..3644+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17569.5290.1 ID=mRNA_Ecto-sp13_S_contig17569.5290.1|Name=mRNA_Ecto-sp13_S_contig17569.5290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17569:991..3644+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCATAGGTGGCGAGTTTGCCATTTGAAACGTCTGACACTCAAGACCTCC
CCCGCTACAACAGTCCCCACCAGTCTGGTCATCATGCTTGGCATGAGGAC
GGTCCCTGCTTCTTCGCTTTCTCCCTAGCAGCAATTGTGTCATTGTGCTG
TCATGCACGGCGGTGGTGGCGATGGAAGAAGTATCGACTAGTGCAGTTTG
CGAGTACACCACCGAGTGTGAAGGGGTTGGATTCCAGTGCATCGACAGAA
GGTGAACGCATGTTTCTGCCCTCGTCATCCGGCGCCTCAGCTCAGTGCCA
TTTCACTTTCGCAAGCAAGCCTGTGCCGGCTATTATGACATTAACTGATC
AATACTTCTATGCACGAAGTATTAGCTATGCAAGCCGCGGGTAAAAGCTT
ATGAAAACGTGCCATCACCGCCCGTCCTTAAATTGAATTTGCGTCTGACG
GCCGTCGCATGGTGTTGGTACCTTCTGCGGGTTGGCGGGAGGCAGATGCA
TGTGTAACCCTCTATGGGCTCACGCAGGGCCAAACTGTGACGAACTGAGG
TGGGCTTCGTGGGGGTTGGTGGTTGTACTCACGCTCGTGAGCATCTTCTC
TGTCGCCGTGCTGGCTACCGCGGCGAAGAGCCTCAAGAGAGCTTCCTCGT
TGAAGTGTGGTTCGGGATTGTTGCAACTCGGAAGTATGCTGTTCCAATGG
CAAAAGGCATCAGGTGCGTACAAAAACAACTACATGTGCGTGAAGTCACG
AGATGAGAGAGCGAAGAAAATTTCGCCACGCGAAGCACCTCTACCCTTCG
GAAATGGTCTCCATGCACAGGGCGCTACTGCTTTACCTAAGTTGACCCGC
AAGAGTAGCATGCTTGACAACTGCAAACGACTGCAGCGATGCTGTGCTCT
CACATAGTCTGCAATCTTAGTATGCACACGACGAAAACGACCGAACGGGG
TGATTGTTTGACTGTTGTGTGCGTGTCTGTCCGTCCTGCCTGCCGTGTAA
GCAGATTCGGGCTCCACAACGATACGCGTTGTTCTATTGTCGGTGCTGTT
CAACATCATCAGCTACTCGTGGAAGATAATGACAGCTGTCGGTGTGATCT
CAGACGTTGTTTCCGCCTGGTGGGATGCAAGACTCTTTTTCCCGCTGACG
GAAGGATTCATGATTCTACCCACCGCGATTGTGATTTCAGTGTGGATGGA
CGTGGCAAACTCGTCCTTGTCACGCTTGAAGGTAGGATACCACAGAAGCT
TCCGGAATGCCATTGATCTGTGTGTCGTCGTGATCCAGCCACAACATACC
CTCGTTGCGATCGGCCCCGCCAAGTCTGGCGTTGTTTGTTGGTGTTGGTT
ACCGCCGCAAAGAAGCAACATGCGGCTTCTCCTTAGAATCTGATGCGGCA
CACGCTACGAAGGATCGCTACTCTTTCGTCAAAAAGCCATGTTGTCGTGC
CGGCTACATCAGAACTAACCCTAACCCTAAGCGAACAAGAGGGGCACACA
GACCGCGACTGGGAGCTCCAATTCTGGTTTTTGTAGTTTGGAGGGTATCC
TATCCACTGGAAAGCGCCCGCCTTTATGCATTGCTAGAGTACACTAGGGT
GTGCCAGCCCTGTGATGTGCAACGACATGCCTTCGTACTCGCCCCCCATC
CCCCCCCCCCCTTGCGCTACTGTTTGATTAATTTCGTTATTCTCGATCTT
GGTCACGCCCCGGTCACATCTCGTCAATCCCGTAGTCAAAGACAAAACTG
GCAAGGACAAAGAAGGCGCTCCAGCTAGGGACGGCCACCCACGTCGCCCT
CCTCCTGTTGATATGCATCTTTGGCCATTTGGAGCTGGCGATGACGGTGC
AGCTAGGTGCGATCGGGCTGGGCCTGACCGCGTGCGGATCTGGAGCGGCG
AAGGTAAGCGTAGGGTCTAGGTGTCGATCACAATAAGAATCTTTTCGGGT
GTTGGTCGGCCACTCGCAGAAATTGTGGTTCAGGCTTGATGCTTAGCGTC
AAGTCCTTGAAGGATGAAAAACTCGACCCCACAAACATGTTTGTTATCCG
GACCACATGCAATGCTGTAACCCCACCGCCACACCCCCGCCGCCCTCTCG
CTTCTCTTTCTCTCTCGTAGCTTTGCCATACCCTTCGGGGCTTGGGGGAA
AACAGCGCCAACATCGCGGATAACGTCTTCAGGGTGTCTCGGGCAATGGG
CATTTCTCTCTGTGAGTTGCATCTAACTGCTCCCTCCATTTTGTATAGTA
CTGTCAGAACATCGACAACGCGATACAGTAGCCGGGCCTACAACCTTGCC
ATCGTGGACACGATCACCGTGCGTGAGCAAGGTGCTTCTAATCGTGAAAG
AGAAGATCGCGTCTGTACAAGGGGCATCCTTTGTACGGAATCATGAAGGA
CAAACAACACTGGTCATGCACCATCTAAATTGGCCTGTTCAATTCACCTG
TAGCCTGGAACCCCACACAAAAGCCATTCATACAAAAACAACAGTATAGA
AATAGCGTAACAGCGTTACCACTCAATCGACCACAGGTGTCTTTGATCGA
TTTGTGACACATGCTCCCGAATGTATCTCCTCCGCGTTCCGTTCCCGCGA
GCAGATGGCGTTTTTATCGGCGAAACGATGCTCCTCTCAAGTCGTACCAG
GTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17569:991..3644+

>mRNA_Ecto-sp13_S_contig17569.5290.1 ID=mRNA_Ecto-sp13_S_contig17569.5290.1|Name=mRNA_Ecto-sp13_S_contig17569.5290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=837bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17569:991..3644+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGAAGTATCGACTAGTGCAGTTTGCGAGTACACCACCGAGTGTGA
AGGGGTTGGATTCCAGTGCATCGACAGAAGATGCATGTGTAACCCTCTAT
GGGCTCACGCAGGGCCAAACTGTGACGAACTGAGGTGGGCTTCGTGGGGG
TTGGTGGTTGTACTCACGCTCGTGAGCATCTTCTCTGTCGCCGTGCTGGC
TACCGCGGCGAAGAGCCTCAAGAGAGCTTCCTCGTTGAAGTGTGGTTCGG
GATTGTTGCAACTCGGAAGTATGCTGTTCCAATGGCAAAAGGCATCAGCA
GATTCGGGCTCCACAACGATACGCGTTGTTCTATTGTCGGTGCTGTTCAA
CATCATCAGCTACTCGTGGAAGATAATGACAGCTGTCGGTGTGATCTCAG
ACGTTGTTTCCGCCTGGTGGGATGCAAGACTCTTTTTCCCGCTGACGGAA
GGATTCATGATTCTACCCACCGCGATTGTGATTTCAGTGTGGATGGACGT
GGCAAACTCGTCCTTGTCACGCTTGAAGTCAAAGACAAAACTGGCAAGGA
CAAAGAAGGCGCTCCAGCTAGGGACGGCCACCCACGTCGCCCTCCTCCTG
TTGATATGCATCTTTGGCCATTTGGAGCTGGCGATGACGGTGCAGCTAGG
TGCGATCGGGCTGGGCCTGACCGCGTGCGGATCTGGAGCGGCGAAGCTTT
GCCATACCCTTCGGGGCTTGGGGGAAAACAGCGCCAACATCGCGGATAAC
GTCTTCAGGGTGTCTCGGGCAATGGGCATTTCTCTCTATGGCGTTTTTAT
CGGCGAAACGATGCTCCTCTCAAGTCGTACCAGGTAA
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