mRNA_Ecto-sp13_S_contig17558.5288.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17558.5288.1
Unique NamemRNA_Ecto-sp13_S_contig17558.5288.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17558.5288.1 vs. uniprot
Match: D8LMQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ8_ECTSI)

HSP 1 Score: 334 bits (857), Expect = 1.530e-114
Identity = 173/176 (98.30%), Postives = 175/176 (99.43%), Query Frame = 1 
Query:    1 QSTIQRTPMMSLVGLLVGFVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAKSLLSVAFLGGFAGYLVSQFPFVFLPTFMLALGGGGFLAYLATTKNARGDLTRLLGMRTVAFLGLVSE 528
            +STIQRTP+MSLVGLLVG VLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAKSLLSVAFLGGFAGYLVSQFPFVFLPTFMLALGGGGFLAYLATTKNARGDLTRLLGMRTVAFLGLVSE
Sbjct:    4 KSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAKSLLSVAFLGGFAGYLVSQFPFVFLPTFMLALGGGGFLAYLATTKNARGDLTRLLGMRTVAFLGLVSE 179
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BLAST of mRNA_Ecto-sp13_S_contig17558.5288.1 vs. uniprot
Match: A0A6H5K822_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K822_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 9.180e-110
Identity = 172/176 (97.73%), Postives = 174/176 (98.86%), Query Frame = 1 
Query:    1 QSTIQRTPMMSLVGLLVGFVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAKSLLSVAFLGGFAGYLVSQFPFVFLPTFMLALGGGGFLAYLATTKNARGDLTRLLGMRTVAFLGLVSE 528
            +STIQRTP+MSLVGLLVG VLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAKSLLSVAFLGGFAGYLVSQFPFVFLPTFMLALGGGGFLAYLAT KNARGDLTRLLGMRTVAFLGLVSE
Sbjct:  222 KSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAKSLLSVAFLGGFAGYLVSQFPFVFLPTFMLALGGGGFLAYLATMKNARGDLTRLLGMRTVAFLGLVSE 397
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BLAST of mRNA_Ecto-sp13_S_contig17558.5288.1 vs. uniprot
Match: A0A835Z6C8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C8_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.130e-32
Identity = 80/175 (45.71%), Postives = 104/175 (59.43%), Query Frame = 1 
Query:    1 QSTIQRTPMMSLVGLLVGFVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAKSLLSVAFLGGFAGYLVSQFPFVFLPTFMLALGGGGFLAYLATTKNARGDLTRLLGMRTVAFLGLVS 525
            +ST+ +TP M+L GL +G +LS+ARGAFGDL RALGL + L V RS  + ++YP LP  + A+ M PRRPFPP            I E      P+  G    EFS  K+LL++AF+GG AGY  S+ P   LP  + AL   G  AY  T + + GDL RL GMR  A LG+V+
Sbjct:  168 ESTVHKTPSMALAGLFLGLMLSIARGAFGDLLRALGLGAYLTVVRSASIGSKYPILPQLKAAMHMGPRRPFPPVP----------IGESLSRYRPVPGGP---EFSTMKALLAMAFMGGMAGYFGSK-PVPLLPEVLGALATAGCAAYATTLRTSAGDLARLGGMRFAALLGVVT 328
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17558.5288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMQ8_ECTSI1.530e-11498.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K822_9PHAE9.180e-11097.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6C8_9STRA1.130e-3245.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17558contigEcto-sp13_S_contig17558:2..3563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score318.9
Seed ortholog evalue1.4e-84
Seed eggNOG ortholog2880.D8LMQ8
Model size528
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG OGs2E303@1,2SA5N@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_003310.1
Cds size504
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462913.2939355-CDS-Ecto-sp13_S_contig17558:1..681681462913.2939355-CDS-Ecto-sp13_S_contig17558:1..68Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17558 2..68 -
1681462913.3108022-CDS-Ecto-sp13_S_contig17558:459..5931681462913.3108022-CDS-Ecto-sp13_S_contig17558:459..593Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17558 460..593 -
1681462913.322404-CDS-Ecto-sp13_S_contig17558:3236..35391681462913.322404-CDS-Ecto-sp13_S_contig17558:3236..3539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17558 3237..3539 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462913.33279-UTR-Ecto-sp13_S_contig17558:3539..35631681462913.33279-UTR-Ecto-sp13_S_contig17558:3539..3563Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17558 3540..3563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17558.5288.1prot_Ecto-sp13_S_contig17558.5288.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17558 2..3539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17558.5288.1

>prot_Ecto-sp13_S_contig17558.5288.1 ID=prot_Ecto-sp13_S_contig17558.5288.1|Name=mRNA_Ecto-sp13_S_contig17558.5288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp
MMSLVGLLVGFVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPY
ARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMA
KSLLSVAFLGGFAGYLVSQFPFVFLPTFMLALGGGGFLAYLATTKNARGD
LTRLLGMRTVAFLGLVSE
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mRNA from alignment at Ecto-sp13_S_contig17558:2..3563-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17558.5288.1 ID=mRNA_Ecto-sp13_S_contig17558.5288.1|Name=mRNA_Ecto-sp13_S_contig17558.5288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3562bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17558:2..3563- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTCGACGATTCAGCGTACCCCCATGATGTCCCTGGTGGGCCTCCTCGT
GGGCTTCGTCCTCAGCGTGGCCAGGGGGGCCTTCGGCGACCTATTCCGAG
CCCTGGGCCTCGCCTCTGTCCTTGCCGTCTCCCGCAGCCGCCGTCTGTCG
GCCGAGTACCCCTTCCTCCCGTACGCCAGGCGGGCCCTGGTGATGCTGCC
GCGGCGGCCGTTCCCCCCCGCGGAGAACCCGTGGAAGTACAAGAGGGCGG
ACGCGATAGCGGAGCTGGAGGACGCCGGGGTGCCGCTGGACGCCGGGAAC
CTGCCGGCGGAGTTCAGCATGGCTAAGGTGAAAAATAGGGGCGTTGTTGT
TGTTGCTGTTGTTGTTGTTGTTGTGCAGAGTTCAGCATGAGTAAGGTGAA
AGTTGGTGTTGTTGTTGCTGTTGTTGTTGCTGTTGTTTTGTAGAGTCGGC
GTGGCTAAGGTGAGATTCAGTAGTTCTACAGGGGCGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTGCAGAGTTCGGCATGGCGAAGGTGAGTTCA
GTGTCTTCTAAGGTATTGTTGGTTGTGGATGTCACGGTTATGGTGTTGCC
TCGCGGGGGTGTCAGAAGAGGCCATTTTTCACTTCGCAAGGAGGGGAGCT
GGGGTAGGTCTCTAGGGGGAGCACGGTGCGGCAGAAGAGGGGAGAGGAGG
AATGTGTTCGTGCGTGGGGCTGCTTGCCTGTTAGGCGACTTATCCCACCC
GCTTTCGTCTCTTCGACACGGGTGTGGTCGTGTCTCAGGGCCACCCGATT
TTTTTCTCTCTTTCGAAAGCATCTATCCGTCGCTTGGTCCTTTTGGCGGT
CATTGTCAGCTTTCTGGTGATAGTCCGGAACGCGCTGGTTGTCTCTCCCA
TGAGGTACATGCAGTTACGTGACTCTTTCGGCCCGGTGGGGTTGAACCGA
ACGGAACGCGTGGGTACGCAACTATGACTTGCACGTCACGCATTCAGACA
AGTGTTCCGTCAAGTGGTCGATCAATACGGACAGATGAAGGTACTGGGCA
GAGAGATCGGAACGGTTTTTCTTATGTAGAGACAACAACAACAATCAGAC
TGTTGTTTTTTGGGACACAGACACGCGTTGATGTCGACATCGGCCGCGCC
GGCGAGGCGGGGGCTTGCTTGGACATCTTGTGGGGAAAAAAAAGCACGAT
ATGATTCCGCATGGACAACGCTGCTGCACACAACTCAGGGACAGACGTGG
GGGATAACACAAAAGCACCGGCAGAGGCTGATTTGAGACAGGTTATTAGC
CGCAGCCAAGCTAACCATACGAGGAATCCATCACATGGCAGTGACGTGTT
TTGGGGGAGCTCGTCAATCTCACCGTAGCCAAGTGCATAGGTCGACGATC
CTCTTGCATACGAAGCAGGGTGGACGAGAGGTGTTGCCAGATAGCAGCCT
CGGAACTTCGCACACCTGAGGACGTCGCAAAAGAGCTGACATCGTCGCGC
CGATTCTCGTCGGATCCGCCGATTCCACAGCAGACGCTCCATCCAACCAG
AGCGCCAGCGGGCGGTACCGACGATGCCGCCGGCATAAATACCGGCACCG
GTAAACTCAGCGACGACGACCGTACTGCCGTGGCCTGTGCGGAGTACTGC
TGTACCGTAGGAAGTAGGAAAGAAGGGGCCACGGCATGGAACGTCGGCGC
CAGCGACATGGGCTGCATTCCCCCCGCCATCACACCGTTCCAATTGTGCT
GCTTGGTTAGCCCTGCGTGCAGACGCGCTTCCGTAGAATTTCTTGCGAGT
GCCTCATAGTCTACCTTGCCGCTTATTTCTGATGGGAGAGGCCAACTTCT
GGTGCAAAGCCATGAACCCTACCACCGGGTCCCGCACGGTCTCGCTATGG
TCCATCATCGCTTAACAGTAGCGCCGTGAGCTGTTACCGAAGCTACTGCT
AGCGATGATACACCTATAGAGCGAGATCGTCCAGGACCCGGTGGTAGGGT
GCATGGCTTTGCACCGGAAGTTGGCCTCTTCATCAAAAATAAGCGGCATG
GTAGACTATGAGGCATTTCGCGAGAAATTCTACGGAAGCGCGTCTGCACG
CAGGGCTAACCAAGCAGCACAATTGGAACGGTGTGATGGCGGGGGGAATG
CAGCCCATGTCGCTGGCGCCGGCGTTCCATGCCGTGGCCCCTTCTTTCCT
ACTTCCTACGGTACAGCAGTACTCCGCACAGGCCACGGCAGTACGTTCGT
AGTCGCTGAGTTTACCGGTGCCGGTATTTGTGCCGGCGGCATCGTCGGTA
CCGCCCGCTGGCGCTCGGGTTGGATGGAGCGTCTCCTGCGGAATCGGCGG
ATCCGACGAGAATCGGCGCTTTTTGTGTCCGCTGCCGGCGACCTCCTCGG
GTGCGAAGCAAGTGCCGGACGTGCTATCTGGCAACACCTCTCGTCCACCC
TGCTTCGTGTGCAGTCGATCGATACTGGGCCGCGGAGATGTACAAGAAGG
GAGAGGGAAGTGTGCATGAGTGAGCCGGGAAAAGTAGAAGGAAAGTACAG
GGAGATGTTTGAGGCATGGAATAGACAGGATAAGACGTTGGCTGTACTGG
GGCATAGGAAGCGGGTTGAAAAGGCGGAAATTGATATCGGTCGGATAAGC
AAGACTAGGTAAGAAATTTTTGAACCACCTTTTGCAAAGTAGGAGGGAAT
GATTGGCCATCGATTATCGGTCCGGTGGGAACAATGCTCCGTCCTCTAGA
GGACGCGTGGTCGATGGTCAAATCGCTAAATGGCATGCAAAACATGAGAG
TACGCCGCCCGCCCCCTCCCCCCTGTCTCCATCTTGCCCAAATCAACCAA
TGATATGAAACCGTCACTGCTATCGGTGACGTGTTCCTCGGGGGCGTCGC
AAATGACATGAACGCGCCCCCCCCCCTCCTTGTCCCCCTCTTGCCCAAAT
CAACCAATGGTATGAAACAGTCACTGCTGTCGGTGGCGTTCCTCGGGGGG
TTTGCGGGGTACCTGGTGTCCCAGTTCCCGTTCGTGTTTCTACCGACCTT
CATGCTGGCGTTGGGCGGGGGCGGCTTCCTGGCCTATCTGGCGACAACGA
AGAAGTGAGTCAACAGCAGCACGAGCGGTGCCATGATGTTGTTTGGTGTC
GCCAGAGGGTGGTGCCGTTTGGGTGCAATGTGTTTGTTTTTTGCTGTGCT
GCGGGCACCCCGACGCCTCCCTCCCCCTGCCCCGCACGTTTCGCCGTTTG
GCTTGGTAGGGTGGGGTAAGGAAGGGAAGGGTCTCGACCGCAAGTATCAC
CTTCTCTTGCAAATGTTGAGTTCCTCTGGCTATGCATCGTGTGAATTGTA
TGATTGAGGCGTTCACCTGTCGTGGCCCCTATTCGCCCGCCCACTGCCTC
ACTCCCCCGTCTCCTCCGACTTTGTCCTGTCTTCTACTCGCACGTTTCGG
ACTGCCGGCTCTCTGACACGCTTTTTCTTTGTTTTATTTTTTCAGTGCTC
GCGGTGACCTTACCCGTCTTCTCGGGATGCGGACCGTGGCTTTCCTGGGC
CTGGTGTCGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17558:2..3563-

>mRNA_Ecto-sp13_S_contig17558.5288.1 ID=mRNA_Ecto-sp13_S_contig17558.5288.1|Name=mRNA_Ecto-sp13_S_contig17558.5288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17558:2..3563- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGTCCCTGGTGGGCCTCCTCGTGGGCTTCGTCCTCAGCGTGGCCAG
GGGGGCCTTCGGCGACCTATTCCGAGCCCTGGGCCTCGCCTCTGTCCTTG
CCGTCTCCCGCAGCCGCCGTCTGTCGGCCGAGTACCCCTTCCTCCCGTAC
GCCAGGCGGGCCCTGGTGATGCTGCCGCGGCGGCCGTTCCCCCCCGCGGA
GAACCCGTGGAAGTACAAGAGGGCGGACGCGATAGCGGAGCTGGAGGACG
CCGGGGTGCCGCTGGACGCCGGGAACCTGCCGGCGGAGTTCAGCATGGCT
AAGTCACTGCTGTCGGTGGCGTTCCTCGGGGGGTTTGCGGGGTACCTGGT
GTCCCAGTTCCCGTTCGTGTTTCTACCGACCTTCATGCTGGCGTTGGGCG
GGGGCGGCTTCCTGGCCTATCTGGCGACAACGAAGAATGCTCGCGGTGAC
CTTACCCGTCTTCTCGGGATGCGGACCGTGGCTTTCCTGGGCCTGGTGTC
GGAG
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