mRNA_Ecto-sp13_S_contig1755.5285.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1755.5285.1
Unique NamemRNA_Ecto-sp13_S_contig1755.5285.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1755.5285.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 6.110e-87
Identity = 123/164 (75.00%), Postives = 144/164 (87.80%), Query Frame = 1 
Query:  571 DDSLQFAVLRDPRAVAVSTYFYVQERPNSDFGQLSKGKSLDEAVLLILPQVCQFTTIRHILFDGQMSDRSEVFWYEDALRDPVDWHYRWASLAGFSLPTTWMKDVNATLTKGQQEPKRDRHPGGLEVSSNRTWELEVSPGIREEMDAILRTWLPGVLLARLGVP 1062
            DDSLQFAVLRDPRAVAVSTYFYV+  P      +S+GKSLDEAVLLILPQ+CQFTTIRH+LFDGQ+SD+SE+FWYEDA+RDP+ WHYRWAS AGF+LP +W+KD++ATL + QQ+ KRD HPGG +VSS RTWE E+SP IREEMD+ILRTWLPGVLL RLG+P
Sbjct:   27 DDSLQFAVLRDPRAVAVSTYFYVKSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDIDATLPEAQQKVKRDPHPGGQQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLERLGIP 190
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BLAST of mRNA_Ecto-sp13_S_contig1755.5285.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 6.720e-84
Identity = 124/227 (54.63%), Postives = 155/227 (68.28%), Query Frame = 1 
Query:  382 ISRVEVAASTRYKHVFPVPKSCRWKHSNGILHVGEGCGSVNGVPVENAADLWLCMKEASCEYSDDSLQFAVLRDPRAVAVSTYFYVQERPNSDFGQLSKGKSLDEAVLLILPQVCQFTTIRHILFDGQMSDRSEVFWYEDALRDPVDWHYRWASLAGFSLPTTWMKDVNATLTKGQQEPKRDRHPGGLEVSSNRTWELEVSPGIREEMDAILRTWLPGVLLARLGVP 1062
            + RVE++ ST  KH  PV +SC W H +G +H G+GC S +G PVE  ADLW CM++  CE +D+ LQF  +RDPRAVAVSTYF+   R + D        SLD+ VL ILP +C FTT+RHILF G +S+R+E+FWYE  + DP DWHYRWAS AG  LP  W   ++  + + Q     + HPGG E S NRTW+ EVSPGIR EMD+ILR WLPGVLLAR G+P
Sbjct:    2 LRRVEISISTVDKHRLPVNESCPWSHGSGTVHEGDGCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFH---RVHKDNNYQKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGW---IDGMVAENQAHKHLNPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLARYGIP 222
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BLAST of mRNA_Ecto-sp13_S_contig1755.5285.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 2.350e-71
Identity = 109/160 (68.12%), Postives = 132/160 (82.50%), Query Frame = 1 
Query:  595 LRDPRAVAVSTYFYVQERPNSDFGQLSKGKSLDEAVLLILPQVCQFTTIRHILFDGQMSDRSEVFWYEDALRDPVDWHYRWASLAGFSLPTTWMKDVNATLTKG-QQEPKRDRHPGGLEVSSNRTWELEVSPGIREEMDAILRTWLPGVLLARLGVPARE 1071
            +RDPRAVAVSTYFY++  P       S+GKSLDEAV++ILPQ+CQFTTIRHILFDGQ+SDRSE+FWYEDA+RDP+ W+ RWASLAGF+LP  W+KD+ A+LT+  + + KR+ HPGG  VSS+RTWE EVSP  R EM++ILRTWLPGVLLAR  VPA E
Sbjct:    1 MRDPRAVAVSTYFYIKRSP-IHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLTEAAENDRKREPHPGGQVVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLARFDVPASE 159
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BLAST of mRNA_Ecto-sp13_S_contig1755.5285.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 3.570e-65
Identity = 120/355 (33.80%), Postives = 185/355 (52.11%), Query Frame = 1 
Query:   88 LGTGQCIPCEGLFARLEEATNGKLQQSSHIELRGEPKSGTHLSWSWAEGILTHTCEHLQDMYGSDTCIIEY------------------IDGRPNNMRMVFEPGLAR--------SDEHCSCQGISRVEVAASTRYKHVFPVPKSCRWKHSNGILHVGEGCGSVNGVPVENAADLWLCMKEASCEYSDDSLQFAVLRDPRAVAVSTYFYVQERPNSDFGQLSKGKSLDEAVLLILPQVCQFTTIRHILFDGQMSDRSEVFWYEDALRDPVDWHYRWASLAGFSLPT-TWMKDVNATLTK--GQQEPKRDRHPGGLEVSSNRTWELEVSPGIREEMDAILRTWLPGVLLARLGVPA 1065
            L   +C PCE +F +L  A     QQ   ++LRGEPKSGT   + WA   L  TCE L  +YG  TC   +                  +D +   +  VF+P            S   C C  + +V +  S+ +KH  PVP SC W+H + +    +GC +VNG  V N  D   C+++  C   DD +Q  +LRDPRAVAVS++F+++   +  +  L+  +S+D  VL +LP +C F  +R+++   ++  ++  F Y+++L DP+ WH RW S  G + P    ++  N +L +  G      D+HPGG E +  RTWE E+S  + E+++ I R WLP VLL + G+ A
Sbjct:   78 LQADECPPCETMFGKLNGA-----QQHVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMK--EVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLT-DESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKFGIGA 424
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BLAST of mRNA_Ecto-sp13_S_contig1755.5285.1 vs. uniprot
Match: D7FUF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF6_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.840e-30
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  751 LFDGQMSDRSEVFWYEDALRDPVDWHYRWASLAGFSLPTTWMKDVNATLTKGQQEPKRDRHPGGLEVSSNRTWELEVSPGIREEMDAILRTWLPGVLLARLGVP 1062
            +F+G +SDRSE+FWYE+ L DP  WHYRWAS AG  LP  W   ++  +   Q+    +RHPGG + ++ RTW  EVSPGI  +M++ILR WLP VLLAR  VP
Sbjct:    1 MFEGLLSDRSEMFWYEETLEDPFAWHYRWASFAGLILPRAW---IDGMVAVNQERLFFNRHPGGGKRTAKRTWRDEVSPGIHHDMESILRKWLPPVLLARFEVP 101
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BLAST of mRNA_Ecto-sp13_S_contig1755.5285.1 vs. uniprot
Match: A0A6H5KK10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK10_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.990e-13
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:  895 LTKGQQEPKRDRHPGGLEVSSNRTWELEVSPGIREEMDAILRTWLPGVLLARLGVP 1062
            + + Q     + HPGG E    RTW+ EVSPGIR EMD+ILR WLPGVLLAR G+P
Sbjct:    2 VAENQAHKHLNPHPGGAETPFKRTWQNEVSPGIRPEMDSILRKWLPGVLLARYGIP 57
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1755.5285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JG38_9PHAE6.110e-8775.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDV7_9PHAE6.720e-8454.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2T4_ECTSI2.350e-7168.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJE4_ECTSI3.570e-6533.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUF6_ECTSI1.840e-3052.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KK10_9PHAE4.990e-1358.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1755contigEcto-sp13_S_contig1755:8489..11016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1074
Hectar predicted targeting categoryother localisation
Exons4
Cds size1074
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462913.042001-CDS-Ecto-sp13_S_contig1755:8488..89911681462913.042001-CDS-Ecto-sp13_S_contig1755:8488..8991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1755 8489..8991 -
1681462913.0531743-CDS-Ecto-sp13_S_contig1755:9161..93431681462913.0531743-CDS-Ecto-sp13_S_contig1755:9161..9343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1755 9162..9343 -
1681462913.0647998-CDS-Ecto-sp13_S_contig1755:10300..105011681462913.0647998-CDS-Ecto-sp13_S_contig1755:10300..10501Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1755 10301..10501 -
1681462913.075486-CDS-Ecto-sp13_S_contig1755:10828..110161681462913.075486-CDS-Ecto-sp13_S_contig1755:10828..11016Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1755 10829..11016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1755.5285.1prot_Ecto-sp13_S_contig1755.5285.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1755 8489..11016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1755.5285.1

>prot_Ecto-sp13_S_contig1755.5285.1 ID=prot_Ecto-sp13_S_contig1755.5285.1|Name=mRNA_Ecto-sp13_S_contig1755.5285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=358bp
LQLALLGAYAASGIELYSENIAHTGPPETLGTGQCIPCEGLFARLEEATN
GKLQQSSHIELRGEPKSGTHLSWSWAEGILTHTCEHLQDMYGSDTCIIEY
IDGRPNNMRMVFEPGLARSDEHCSCQGISRVEVAASTRYKHVFPVPKSCR
WKHSNGILHVGEGCGSVNGVPVENAADLWLCMKEASCEYSDDSLQFAVLR
DPRAVAVSTYFYVQERPNSDFGQLSKGKSLDEAVLLILPQVCQFTTIRHI
LFDGQMSDRSEVFWYEDALRDPVDWHYRWASLAGFSLPTTWMKDVNATLT
KGQQEPKRDRHPGGLEVSSNRTWELEVSPGIREEMDAILRTWLPGVLLAR
LGVPARE*
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mRNA from alignment at Ecto-sp13_S_contig1755:8489..11016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1755.5285.1 ID=mRNA_Ecto-sp13_S_contig1755.5285.1|Name=mRNA_Ecto-sp13_S_contig1755.5285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1755:8489..11016- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCAATTGGCTCTCCTAGGGGCGTACGCTGCCAGCGGGATCGAACTTTA
TTCGGAGAACATCGCCCACACCGGACCGCCTGAGACACTGGGGACAGGTC
AATGTATACCGTGTGAAGGGCTGTTTGCGAGACTGGAAGAGGCAACCAAT
GGAAAGCTCCAGCAATCATCCCACATTGAACTCCGGGGGTGGGTACAGTG
CGGTACTGTGTGTGGTTTTGTGTAGAATCGCCTACCAGATTTGTACCAGG
ACGAAAGTATAGGGTACAGGTCATGGTAAAAATGCTACGGTGTAAAGAAA
AATCGGTCGTGACTTCGGTCATGACTCTTACTTCCCGAAATGTGTGGATG
GTGGTCACCGGACTCCTCCTCCCCTTCAGTGTCGACGCAACGACACACCA
CTATATGTGAAAAGGACGATGATGCGAACATGGAACCCGTTCAGACTCCT
CAGCTCGAGCTTTACTTTCTACCCTTTCAATTTTCCTCGTCTGTTGTGCT
ACTCCAACGTCGAAGCGAGCCCAAGAGTGGTACCCATTTATCGTGGTCCT
GGGCAGAGGGCATCCTAACGCATACGTGCGAGCATTTGCAAGACATGTAC
GGGTCAGATACATGCATAATCGAATACATCGACGGCAGGCCGAACAACAT
GCGAATGGTGTTCGAGCCGGGCTTGGCTCGAAGCGATGAACATTGCTCAT
GTCAAGGGATAAGTAGGTGAGCACGTCTGGGGAAGGTGTTCGGCATTGGG
CCGCGTAGGTGGGCTTCCTTCTACTTTCCTCCTCCACAGTACGTAGGAAC
CCACGTTCATGGAAAGGCGATAAGAGAAAATGATAAAAAAAGAGAGCAAT
GTAGGTCGGGGTTGTTTCGTGGGCAACAGGCGATCTGAGAAACTTGATGG
CAGCCCATAAAGTCTCTCTTGGATCCCTGAAGCAATCAATTGGGCATGCC
GGCGCTCCGAGAAATATATACTATTCCAGGAATGCAGTGGGTGATGGTGT
ATCTCTTCTTGTGAGTTTCTCACGCCTATTGGTTGGCATTTACTCATCAG
TGGAGGGTAATACACTCACTAGCGCCTTTACTCGTGGGGTACTCGCATGC
GTCATCATTAGCCTCATAACCTGTCTGTCAATGCTGCAGACAAAATGTGC
GGAAATGGTTCCCGGGGTAGATATTATCGTGTGGTCGGCTAGAGTGCGTC
ACCTGAGATGAAGCAAAATGTGAAATGTAGTCAGAGGTAGAGAGAATGAA
CGAACACTGTTTGCGTCGTTTGTGCGATGGGTTAACACGTTCCGCGTTTT
TCCCCTCTTGGGTGTGAAAAACTGCGATCTACGACATCAAAATGGTGGGC
GGTTCTCGGAGAAATAATGCTAGCGAGTTGGAGGAATGTCCATCACAAAC
TGAAATATTTTCCAACAAGTATTTGATATCGCCGGGTGTCGGCAATGCGA
ACTACAGTTCAGGCTCGCCAGTACGGAAGCTTACGTTAGAACAATGGCCT
TCACGTTTCAAGAATAACAAGAGAAATCTTTCAAGGAATACACCCCAACC
GTAAATCCTACATTGAAATCTCCTCTTGACCTATGCTCGACGGTGTGATG
AAATTCGAAGTTGCAACCTCCATTCCAAATGCGTAAATCTCGTTCACGGG
CCGCGACTTTGTTGATCCTACAGGGTAGAGGTTGCTGCTTCGACTCGTTA
CAAGCACGTGTTTCCTGTACCCAAGTCCTGCCGCTGGAAACACTCTAATG
GAATCCTCCATGTAGGGGAGGGATGTGGAAGCGTCAACGGAGTACCTGTG
GAAAATGCCGCAGATTTGTGGCTTTGCATGAAAGAAGCATCGTGCGAGTA
TTCAGGTACGGGTCGTCCAAACCCAACTCTGAATTGCTCGAGTAATTACC
CTCACATTTGTCAATTGCCCAGGGTAGAAGGGCAATGCATTTTTTTTGTC
GGCCAGCGCGCTTCCAACTTCACGGTCCGGAAACGTAAGCCCTACCACAT
GGTTTCGCCCGAATATCCCGACCAGATGATTCACTCCAGTTCGCGGTGTT
ACGGGACCCACGTGCTGTGGCTGTCAGCACCTACTTCTACGTCCAAGAAC
GCCCTAATTCAGACTTCGGTCAGCTATCCAAGGGCAAATCTTTGGACGAG
GCCGTGTTGTTGATTCTTCCGCAAGTCTGCCAGTTCACCACGATTCGACA
CATCTTGTTCGATGGGCAAATGTCTGACAGAAGTGAAGTGTTCTGGTACG
AAGATGCTTTGAGAGATCCGGTAGACTGGCACTACCGATGGGCATCGCTC
GCGGGCTTTTCGCTGCCCACAACTTGGATGAAGGACGTAAATGCGACCCT
AACAAAGGGGCAGCAGGAGCCCAAGCGTGATCGTCACCCTGGAGGACTGG
AGGTTTCTTCAAACAGAACCTGGGAGCTCGAGGTTTCTCCGGGGATACGC
GAAGAGATGGACGCCATTCTTCGAACGTGGCTGCCTGGGGTACTTCTAGC
GCGACTCGGCGTACCGGCTCGAGAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1755:8489..11016-

>mRNA_Ecto-sp13_S_contig1755.5285.1 ID=mRNA_Ecto-sp13_S_contig1755.5285.1|Name=mRNA_Ecto-sp13_S_contig1755.5285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1755:8489..11016- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCAATTGGCTCTCCTAGGGGCGTACGCTGCCAGCGGGATCGAACTTTA
TTCGGAGAACATCGCCCACACCGGACCGCCTGAGACACTGGGGACAGGTC
AATGTATACCGTGTGAAGGGCTGTTTGCGAGACTGGAAGAGGCAACCAAT
GGAAAGCTCCAGCAATCATCCCACATTGAACTCCGGGGCGAGCCCAAGAG
TGGTACCCATTTATCGTGGTCCTGGGCAGAGGGCATCCTAACGCATACGT
GCGAGCATTTGCAAGACATGTACGGGTCAGATACATGCATAATCGAATAC
ATCGACGGCAGGCCGAACAACATGCGAATGGTGTTCGAGCCGGGCTTGGC
TCGAAGCGATGAACATTGCTCATGTCAAGGGATAAGTAGGGTAGAGGTTG
CTGCTTCGACTCGTTACAAGCACGTGTTTCCTGTACCCAAGTCCTGCCGC
TGGAAACACTCTAATGGAATCCTCCATGTAGGGGAGGGATGTGGAAGCGT
CAACGGAGTACCTGTGGAAAATGCCGCAGATTTGTGGCTTTGCATGAAAG
AAGCATCGTGCGAGTATTCAGATGATTCACTCCAGTTCGCGGTGTTACGG
GACCCACGTGCTGTGGCTGTCAGCACCTACTTCTACGTCCAAGAACGCCC
TAATTCAGACTTCGGTCAGCTATCCAAGGGCAAATCTTTGGACGAGGCCG
TGTTGTTGATTCTTCCGCAAGTCTGCCAGTTCACCACGATTCGACACATC
TTGTTCGATGGGCAAATGTCTGACAGAAGTGAAGTGTTCTGGTACGAAGA
TGCTTTGAGAGATCCGGTAGACTGGCACTACCGATGGGCATCGCTCGCGG
GCTTTTCGCTGCCCACAACTTGGATGAAGGACGTAAATGCGACCCTAACA
AAGGGGCAGCAGGAGCCCAAGCGTGATCGTCACCCTGGAGGACTGGAGGT
TTCTTCAAACAGAACCTGGGAGCTCGAGGTTTCTCCGGGGATACGCGAAG
AGATGGACGCCATTCTTCGAACGTGGCTGCCTGGGGTACTTCTAGCGCGA
CTCGGCGTACCGGCTCGAGAATGA
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