mRNA_Ecto-sp13_S_contig17544.5283.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17544.5283.1
Unique NamemRNA_Ecto-sp13_S_contig17544.5283.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17544.5283.1 vs. uniprot
Match: D7G396_ECTSI (Fucosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G396_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 3.490e-60
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 1 
Query:    1 NRQENKVAVLGRYKFLLAFENNNQIRDYVTEKVYNGLQSGTLPVYWGAENVEDFVPTGSVVKASDFSSPAELGKHLKMLAANEEAYEAYFKWRDDPEEER 300
            NRQENKVAVLG YKFLLAFENNNQIRDYVTEKVYNGLQSGTLPVYWGAENVEDFVP GSVVKASDFSSPA+LG HLKMLAANEEAYEAYFKWRDDPEEER
Sbjct:  303 NRQENKVAVLGHYKFLLAFENNNQIRDYVTEKVYNGLQSGTLPVYWGAENVEDFVPKGSVVKASDFSSPADLGNHLKMLAANEEAYEAYFKWRDDPEEER 402
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17544.5283.1 vs. uniprot
Match: A0A6H5KXC7_9PHAE (Fucosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC7_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.230e-58
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 1 
Query:    1 NRQENKVAVLGRYKFLLAFENNNQIRDYVTEKVYNGLQSGTLPVYWGAENVEDFVPTGSVVKASDFSSPAELGKHLKMLAANEEAYEAYFKWRDDPEEER 300
            NRQENKVAVLG YKFLLAFENNNQIRDYVTEKVYNGLQSGTLPVYWGAENVEDFVP GSVVKASDFSSPAELGKHLKMLAANEEAYEAYFKWRDDPEEE+
Sbjct:  599 NRQENKVAVLGHYKFLLAFENNNQIRDYVTEKVYNGLQSGTLPVYWGAENVEDFVPKGSVVKASDFSSPAELGKHLKMLAANEEAYEAYFKWRDDPEEEK 698
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17544.5283.1 vs. uniprot
Match: D3B9Z0_POLPP (Fucosyltransferase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B9Z0_POLPP)

HSP 1 Score: 112 bits (280), Expect = 8.220e-27
Identity = 52/91 (57.14%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:   16 KVAVLGRYKFLLAFENNNQIRDYVTEKVYNGLQSGTLPVYWGAENVEDFVPTGSVVKASDFSSPAELGKHLKMLAANEEAYEAYFKWRDDP 288
            K  VLGRY F L+FENNN I DYVTEKVY+ L SG++P+Y GA+N++++VP  S++K SDF SPA+L K+L  L+ NEE Y  YF+W++ P
Sbjct:  252 KEKVLGRYLFSLSFENNN-ITDYVTEKVYSLLMSGSIPIYMGADNIDEYVPEKSIIKTSDFKSPADLVKYLLYLSENEEEYNKYFEWKNKP 341
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17544.5283.1 vs. uniprot
Match: A0A151ZKK2_9MYCE (Fucosyltransferase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZKK2_9MYCE)

HSP 1 Score: 111 bits (278), Expect = 1.460e-26
Identity = 49/91 (53.85%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:   16 KVAVLGRYKFLLAFENNNQIRDYVTEKVYNGLQSGTLPVYWGAENVEDFVPTGSVVKASDFSSPAELGKHLKMLAANEEAYEAYFKWRDDP 288
            K  VLG+Y F ++FENNN+  DYVTEKV+  L SG++P+Y GA+N++++VP GS++K SDF SP +L  HLK L +N  AYE YF+W+ +P
Sbjct:  233 KRKVLGKYMFSISFENNNKT-DYVTEKVFTSLLSGSVPIYMGADNIDEWVPKGSIIKTSDFKSPTDLVNHLKYLISNHTAYEEYFQWKTEP 322
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17544.5283.1 vs. uniprot
Match: UPI000644DE63 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644DE63)

HSP 1 Score: 110 bits (274), Expect = 5.200e-26
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:   16 KVAVLGRYKFLLAFENNNQIRDYVTEKVYNGLQSGTLPVYWGAENVEDFVPTGSVVKASDFSSPAELGKHLKMLAANEEAYEAYFKWRDDP 288
            K  VLGRY F LAFENNN I DYVTEKVY  L SGT+P+Y G+EN++++VP+ SV+K +DF SP +L  +LK L  NE+ Y  YF+W+  P
Sbjct:  240 KEKVLGRYMFALAFENNN-ITDYVTEKVYTLLLSGTIPIYMGSENIDEYVPSHSVIKTNDFKSPKDLSDYLKNLMENEDEYNKYFEWKKLP 329
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17544.5283.1 vs. uniprot
Match: UPI000644CFCA (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644CFCA)

HSP 1 Score: 108 bits (270), Expect = 8.150e-26
Identity = 51/91 (56.04%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:   16 KVAVLGRYKFLLAFENNNQIRDYVTEKVYNGLQSGTLPVYWGAENVEDFVPTGSVVKASDFSSPAELGKHLKMLAANEEAYEAYFKWRDDP 288
            K  ++  Y F LAFENNN I DYVTEKVYN +  GTLP+Y GA N+++FVP  S++K SDF SP  L K+L  LA+NE AY  YF W+  P
Sbjct:  245 KSKIMSEYLFGLAFENNN-ITDYVTEKVYNVILGGTLPIYMGAPNIDEFVPEKSIIKTSDFESPQALAKYLSYLASNESAYNEYFAWKSKP 334
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17544.5283.1 vs. uniprot
Match: A0A7S8IQX8_9HYPH (Alpha-1,3-fucosyltransferase n=1 Tax=Mesorhizobium sp. INR15 TaxID=2654248 RepID=A0A7S8IQX8_9HYPH)

HSP 1 Score: 105 bits (262), Expect = 3.020e-25
Identity = 50/93 (53.76%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:   10 ENKVAVLGRYKFLLAFENNNQIRDYVTEKVYNGLQSGTLPVYWGAENVEDFVPTGSVVKASDFSSPAELGKHLKMLAANEEAYEAYFKWRDDP 288
            E K+  +GRYKF L  E N+   DYVTEK++  L +GT+PVY GA+NV++FVP  S + A+DFS PA+L  +L  LAA  +AYEAYF WR  P
Sbjct:  176 ETKIDTIGRYKFCLGLE-NSVAPDYVTEKMFQPLSAGTIPVYLGAQNVDEFVPPNSYINAADFSGPADLAAYLHYLAATPQAYEAYFAWRSMP 267
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17544.5283.1 vs. uniprot
Match: A0A8J4Q3M5_9MYCE (Fucosyltransferase n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q3M5_9MYCE)

HSP 1 Score: 106 bits (265), Expect = 9.050e-25
Identity = 50/91 (54.95%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:   16 KVAVLGRYKFLLAFENNNQIRDYVTEKVYNGLQSGTLPVYWGAENVEDFVPTGSVVKASDFSSPAELGKHLKMLAANEEAYEAYFKWRDDP 288
            K  VL +Y F LAFENNN + DYVTEKVY  L SG++P+Y GA N++D+VP GSV+K SDF +P  L  HL  L  N  AY  YF W+ +P
Sbjct:  249 KRKVLSKYMFSLAFENNN-MTDYVTEKVYTSLLSGSVPIYMGAPNIDDWVPKGSVIKTSDFKNPKHLADHLNYLLNNHTAYNEYFNWKKEP 338
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17544.5283.1 vs. uniprot
Match: F0ZVJ8_DICPU (Fucosyltransferase n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZVJ8_DICPU)

HSP 1 Score: 106 bits (265), Expect = 9.180e-25
Identity = 50/91 (54.95%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:   16 KVAVLGRYKFLLAFENNNQIRDYVTEKVYNGLQSGTLPVYWGAENVEDFVPTGSVVKASDFSSPAELGKHLKMLAANEEAYEAYFKWRDDP 288
            K  VL  YKF LAFENNN I DYVTEKVY  L SG++P+Y G+ N++++VP  S++K  DF SP +L  +LK LA NE AY  YF W+  P
Sbjct:  263 KEKVLSTYKFSLAFENNN-ITDYVTEKVYTSLLSGSIPIYMGSPNIDEWVPEKSIIKTDDFKSPKDLADYLKFLADNETAYNEYFNWKKKP 352
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17544.5283.1 vs. uniprot
Match: F4PU18_CAVFA (Fucosyltransferase n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PU18_CAVFA)

HSP 1 Score: 106 bits (264), Expect = 1.230e-24
Identity = 50/92 (54.35%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   13 NKVAVLGRYKFLLAFENNNQIRDYVTEKVYNGLQSGTLPVYWGAENVEDFVPTGSVVKASDFSSPAELGKHLKMLAANEEAYEAYFKWRDDP 288
            NKV +LGRYKF L FENNN + DYV+EKVY  L SG LPVY GA N+  ++P  S+V  S FS+P +L  +L  L  NE AY+ YF W+  P
Sbjct:  240 NKVRILGRYKFALTFENNN-LTDYVSEKVYTALLSGALPVYMGAPNIYSYIPENSIVDTSKFSNPKQLADYLNYLTNNETAYQEYFAWKKKP 330
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17544.5283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G396_ECTSI3.490e-6096.00Fucosyltransferase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KXC7_9PHAE1.230e-5897.00Fucosyltransferase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D3B9Z0_POLPP8.220e-2757.14Fucosyltransferase n=1 Tax=Polysphondylium pallidu... [more]
A0A151ZKK2_9MYCE1.460e-2653.85Fucosyltransferase n=1 Tax=Tieghemostelium lacteum... [more]
UPI000644DE635.200e-2657.14hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
UPI000644CFCA8.150e-2656.04hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7S8IQX8_9HYPH3.020e-2553.76Alpha-1,3-fucosyltransferase n=1 Tax=Mesorhizobium... [more]
A0A8J4Q3M5_9MYCE9.050e-2554.95Fucosyltransferase n=1 Tax=Polysphondylium violace... [more]
F0ZVJ8_DICPU9.180e-2554.95Fucosyltransferase n=1 Tax=Dictyostelium purpureum... [more]
F4PU18_CAVFA1.230e-2454.35Fucosyltransferase n=1 Tax=Cavenderia fasciculata ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17544contigEcto-sp13_S_contig17544:1603..3257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score199.5
Seed ortholog evalue7.3e-49
Seed eggNOG ortholog2880.D7G396
Preferred nameFUT13
Model size300
KEGG rclassRC00002
KEGG koko:K00753,ko:K01509,ko:K09669,ko:K14412
KEGG ReactionR00086,R06015,R09318,R11318
KEGG Pathwayko00230,ko00513,ko01100,ko04742,map00230,map00513,map01100,map04742
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0005996,GO:0006004,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0008150,GO:0008152,GO:0008417,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010493,GO:0012505,GO:0016020,GO:0016051,GO:0016052,GO:0016740,GO:0016757,GO:0016758,GO:0018392,GO:0019317,GO:0019318,GO:0019320,GO:0019538,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0033692,GO:0034637,GO:0034645,GO:0036065,GO:0036211,GO:0042354,GO:0042355,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0046920,GO:0070085,GO:0071704,GO:0097708,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Exons3
EggNOG free text desc.alpha-(1->3)-fucosyltransferase activity
EggNOG OGsKOG2619@1,KOG2619@2759
Ec32 ortholog descriptionAlpha-(1,3)-fucosyltransferase, family GT10
Ec32 orthologEc-03_005030.1
EC2.4.1.214,2.4.1.65,3.6.1.3
Cds size300
COG Functional cat.M
CAZyGT10
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462912.9366963-CDS-Ecto-sp13_S_contig17544:1602..17161681462912.9366963-CDS-Ecto-sp13_S_contig17544:1602..1716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17544 1603..1716 -
1681462912.9501944-CDS-Ecto-sp13_S_contig17544:2531..26461681462912.9501944-CDS-Ecto-sp13_S_contig17544:2531..2646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17544 2532..2646 -
1681462912.9600716-CDS-Ecto-sp13_S_contig17544:3186..32571681462912.9600716-CDS-Ecto-sp13_S_contig17544:3186..3257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17544 3187..3257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17544.5283.1prot_Ecto-sp13_S_contig17544.5283.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17544 1603..3257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17544.5283.1

>prot_Ecto-sp13_S_contig17544.5283.1 ID=prot_Ecto-sp13_S_contig17544.5283.1|Name=mRNA_Ecto-sp13_S_contig17544.5283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
NRQENKVAVLGRYKFLLAFENNNQIRDYVTEKVYNGLQSGTLPVYWGAEN
VEDFVPTGSVVKASDFSSPAELGKHLKMLAANEEAYEAYFKWRDDPEEER
back to top

mRNA from alignment at Ecto-sp13_S_contig17544:1603..3257-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17544.5283.1 ID=mRNA_Ecto-sp13_S_contig17544.5283.1|Name=mRNA_Ecto-sp13_S_contig17544.5283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1655bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17544:1603..3257- (Ectocarpus species13 EcNAP12_S_4_19m)
AACCGACAAGAAAACAAGGTCGCCGTCCTCGGCCGCTACAAGTTCCTTCT
GGCTTTCGAGAACAACAATCAGTGAGTGTCTCACCCATCGTAGCCGAAGC
AAAGCTTCTCGTGCGGCCGAGAGCGGCCAGCGGTAAGACATCGATCGTGG
TGTGCCATGTTTGTCGTGCGCTCCCAGTCCCGCTGTGCTTGTTGTATGCA
CTTTTTGTGTATAGTTGTGTGATGCGTCGTTTGTACACCTTTCGGTGAGT
TCGCAGGACATTTCAGGCCAGGCTTCCAAAGGAGAACCGCCACACACGTT
GTATTTTTCATCTTTTCTTCTGCAGTGCATGCCTCAACCGCTTTGCGCAA
TAATTATTCTCTCGGCCGGTTCGTCGTCGATCGTGAGGTCGTCTTTTTTG
CGCACACACCAACAAGTCGCTATCAGTTTTGCTTGGGGGCACATTTTGAC
AAAGTGTCCCAGATCGTGTGTGAAACTACGCCGAGATTCGACGTCGGAGC
GTCTCGCGGTTACCACCTGAGAAGTTCAACCACTAGCGCGATCTTGCAGG
TCAAGATTGACCTTGTTTGTATTCACTGCAACGTCGTCTCTGCTGTCCTT
TATTTTTTTAGAATAAGGGACTACGTCACGGAGAAGGTGTACAACGGGCT
GCAGTCGGGCACTCTACCGGTGTACTGGGGTGCGGAAAACGTCGAAGATT
TCGTTCCAACGGGCTCGGTGGTCAAGGTAAGCAACATGACAGACGCAGCT
AACTCAAGGTGATGCCTTTACTACGCCGGAATGTACCGCCGCTGCATACC
GGCGTTTTGGCGGGTACCGGTACCTCACCCCTCTCACGCCATTTCTCTGT
CGTCGTCATCGGCGCTATGTGATGGACACTGCTCTGAGAGGACTGGTATA
CGCCGATGCGACCGGACAAGGACATCGCCAAAAGACGTATGGAGCGCCCG
AGTTTTGCGCGCAAGAGCTCTTTTGATCTCTTTTTGTCTCGGCGTTGGGC
CACTGGTGTTCGCTTGCGGTAGCCAAGATTTGAGCGTTGGGACGGAACAT
CACCAACTTCTCCCACAACTGTCGGCATGTTGTTTCATCAGAAAACGATA
CTCCAGTAAAGAAGTTACCGTCTTTTCGTTGATTGCTTCGGAATGCAGCA
GAGCGTCTCTCCCCGCTGAGATCTTCGCTAAGCATCCTATCTTGTGTCCG
AAGCCCACGAGCGTCCAACCTTCTTCGTGCAGCAGCTTATGCCTGATGTC
ATGGGAACCGGTGTTGGTGTGCGCTCGCACGCCAAGCTTGACTACCTTCC
CGCTAGCTAGGAGCCCGGCTGTTTGAAAAATGTATTCAATGTTTACCCAA
TACTATCGTACCCATCTCGTGTCGTGTACGTGTTCATCATTGCATGTTCA
TCTGCTCATGTCAGGTTTCGGATTTCTTGAGCTTGGCCGAGTAGGGTAGG
CTCCCCACGAGGATTTCAAATTCATTTTCGTATGTGCGATTGTTCTTCAA
CGCTGTCTGTGCTTGTTTTGCGCGAATGATTTTTCTTCAAGGCTTCTGAT
TTCTCGAGCCCGGCGGAGCTGGGCAAGCACCTGAAGATGCTAGCGGCTAA
CGAAGAGGCCTACGAAGCGTACTTCAAGTGGAGAGACGATCCTGAGGAGG
AACGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17544:1603..3257-

>mRNA_Ecto-sp13_S_contig17544.5283.1 ID=mRNA_Ecto-sp13_S_contig17544.5283.1|Name=mRNA_Ecto-sp13_S_contig17544.5283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17544:1603..3257- (Ectocarpus species13 EcNAP12_S_4_19m)
AACCGACAAGAAAACAAGGTCGCCGTCCTCGGCCGCTACAAGTTCCTTCT
GGCTTTCGAGAACAACAATCAAATAAGGGACTACGTCACGGAGAAGGTGT
ACAACGGGCTGCAGTCGGGCACTCTACCGGTGTACTGGGGTGCGGAAAAC
GTCGAAGATTTCGTTCCAACGGGCTCGGTGGTCAAGGCTTCTGATTTCTC
GAGCCCGGCGGAGCTGGGCAAGCACCTGAAGATGCTAGCGGCTAACGAAG
AGGCCTACGAAGCGTACTTCAAGTGGAGAGACGATCCTGAGGAGGAACGG
back to top