prot_Ecto-sp13_S_contig17537.5279.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17537.5279.1
Unique Nameprot_Ecto-sp13_S_contig17537.5279.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length171
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17537.5279.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 104..124
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 26..108
e-value: 2.4E-8
score: 35.5
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 34..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17537contigEcto-sp13_S_contig17537:3154..3666 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17537.5279.1mRNA_Ecto-sp13_S_contig17537.5279.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17537 2302..3666 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17537.5279.1 ID=prot_Ecto-sp13_S_contig17537.5279.1|Name=mRNA_Ecto-sp13_S_contig17537.5279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MDTHRSKKRKRTNTPAGTSRAYPPPATLRAKKDGSQRSCVACGVSVRGGI
AGWAAGSARCVECGEEYHLGCVDRSVTYVRRAGWVCGVCNSNDHNRSRGE
RSAAAEAAAQLSASQQQRQQQQQQEGVDTPPSRVVHVLSSALTRLSSLPD
GGGGSGGGGKVTAGPRAPDGM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD