mRNA_Ecto-sp13_S_contig17536.5278.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17536.5278.1
Unique NamemRNA_Ecto-sp13_S_contig17536.5278.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17536.5278.1 vs. uniprot
Match: D8LL47_ECTSI (Leucine carboxyl methyltransferase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL47_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.940e-21
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 2 
Query:  548 QELLDPAEVRRASEIEILDEVEEWELIMHHYCLVVAAKGEDTVARLSGNPVLSR 709
            QELLDPAEVRRAS+IEILDE+EEWELIMHHYCLVVAAKGEDTVARLSGNPVLSR
Sbjct:  274 QELLDPAEVRRASKIEILDEIEEWELIMHHYCLVVAAKGEDTVARLSGNPVLSR 327
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BLAST of mRNA_Ecto-sp13_S_contig17536.5278.1 vs. uniprot
Match: A0A6H5JEL0_9PHAE (Leucine carboxyl methyltransferase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL0_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 5.240e-21
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 2 
Query:  548 QELLDPAEVRRASEIEILDEVEEWELIMHHYCLVVAAKGEDTVARLSGNPVLSR 709
            QELLDPAEVRRAS+IEILDEVEEWELIMHHYCLVVAAKGE TVARLSGNPVLSR
Sbjct:  209 QELLDPAEVRRASKIEILDEVEEWELIMHHYCLVVAAKGEHTVARLSGNPVLSR 262
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17536.5278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL47_ECTSI2.940e-2196.30Leucine carboxyl methyltransferase 1 n=1 Tax=Ectoc... [more]
A0A6H5JEL0_9PHAE5.240e-2196.30Leucine carboxyl methyltransferase 1 n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17536contigEcto-sp13_S_contig17536:2..2618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score107.1
Seed ortholog evalue5.1e-21
Seed eggNOG ortholog2880.D8LL47
Preferred nameLCMT1
Model size2004
KEGG rclassRC00003,RC00460,RC00745
KEGG koko:K01358,ko:K09272,ko:K15451,ko:K18066,ko:K18203
KEGG ReactionR10586,R10587
KEGG Pathwayko04112,ko04212,map04112,map04212
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000278,GO:0001510,GO:0003674,GO:0003824,GO:0003880,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006479,GO:0006481,GO:0006725,GO:0006807,GO:0007049,GO:0007088,GO:0007346,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0008213,GO:0008276,GO:0008757,GO:0009058,GO:0009451,GO:0009966,GO:0009968,GO:0009987,GO:0010340,GO:0010467,GO:0010564,GO:0010646,GO:0010648,GO:0010941,GO:0010965,GO:0016070,GO:0016740,GO:0016741,GO:0018410,GO:0018423,GO:0019538,GO:0022402,GO:0023051,GO:0023057,GO:0030071,GO:0030488,GO:0031333,GO:0031590,GO:0031591,GO:0031974,GO:0031981,GO:0032259,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043414,GO:0043687,GO:0044087,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044839,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051726,GO:0051783,GO:0051983,GO:0051998,GO:0065007,GO:0070013,GO:0071704,GO:0090231,GO:0090266,GO:0090304,GO:0140096,GO:0140098,GO:0140101,GO:1900457,GO:1900458,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1901976,GO:1901987,GO:1901990,GO:1902099,GO:1903047,GO:1903504,GO:1905818
Exons2
EggNOG free text desc.protein C-terminal leucine carboxyl O-methyltransferase activity
EggNOG OGsKOG2918@1,KOG2918@2759
EC1.14.11.42,2.1.1.233,2.1.1.290,2.3.1.231,3.4.21.92
Cds size312
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03000,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462912.6159735-UTR-Ecto-sp13_S_contig17536:1..4011681462912.6159735-UTR-Ecto-sp13_S_contig17536:1..401Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17536 2..401 +
1681462912.6477168-UTR-Ecto-sp13_S_contig17536:1326..26181681462912.6477168-UTR-Ecto-sp13_S_contig17536:1326..2618Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17536 1327..2618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462912.6280668-CDS-Ecto-sp13_S_contig17536:401..6321681462912.6280668-CDS-Ecto-sp13_S_contig17536:401..632Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17536 402..632 +
1681462912.6376057-CDS-Ecto-sp13_S_contig17536:1245..13261681462912.6376057-CDS-Ecto-sp13_S_contig17536:1245..1326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17536 1246..1326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17536.5278.1prot_Ecto-sp13_S_contig17536.5278.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17536 402..1326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17536.5278.1

>prot_Ecto-sp13_S_contig17536.5278.1 ID=prot_Ecto-sp13_S_contig17536.5278.1|Name=mRNA_Ecto-sp13_S_contig17536.5278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MATKRLAGNKSISYDASPYVVPARKHASGGVQWVTLQSVIMFVCDVDSQQ
ELLDPAEVRRASEIEILDEVEEWELIMHHYCLVVAAKGEDTVARLSGNPV
LSR*
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mRNA from alignment at Ecto-sp13_S_contig17536:2..2618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17536.5278.1 ID=mRNA_Ecto-sp13_S_contig17536.5278.1|Name=mRNA_Ecto-sp13_S_contig17536.5278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2617bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17536:2..2618+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACAGCTTCAGTACTGCGGTACACGAACTGTACACATGAGGAACGGCGGC
CAGGCATACAAGGCATGCGTGTGGTGTCCAAGAGAATCTCTAGTCATCGT
GGACAGCGGCCGGAGCAACCGGTATGCTCCTGGTATCAGCCAAGGCAGCG
AGCAACGCTTTTCCCATGCGTTCCGTGACCCTATGATTTAGCTTTGAGAG
GGAGTTTTTGGGATTTGGATGGGATTCTGGAGACCGCCTCGACTTGCCCT
GCGCGGTAGCTTTCTTGACAACCGTCGGGTCCAATACGGCATTAGATGTT
GTGCATGATGGACCGCATCGTCGTTGGCATTCGTCAGCTGTCAGTACCGA
GCTTCATGAACGTCGTCGAGCAGTGAAGGTAGCTTTTCCTGGTGTAGGTG
ATGGCAACAAAGCGATTGGCAGGAAACAAGAGCATCAGCTATGACGCCAG
CCCCTACGTGGTTCCTGCCCGCAAGCATGCCAGTGGAGGAGTTCAGTGGG
TGACACTTCAGTCAGTCATCATGTTCGTGTGTGACGTGGACTCTCAACAG
GAATTGTTAGACCCTGCAGAGGTGCGGCGTGCTTCGGAGATCGAAATTCT
GGACGAGGTTGAAGAGTGGGAGCTGATTATGGTAAGCAATTTTTTTCTTG
AACAAACATTGTGACCGGGAAAGGACTGCATGTACATGCTTTCAACATTC
GATGCTTTTGTCCATCCTCCATTGTGTTTGAAACGATTTGCGATCTGAAG
CACTCTATTTCCTGGTTCACTTTAGTGCCGCTCGTCCCAGTGGTTCCGTT
AGTAATCTAGCCTCGCGACTTTCCGAAGTTTGGACGTAGCAGTCAAGTGA
ACTTGGATTTGTGTCCACGTTGGTTCCAGTCCAATGCAGGGTAGCGATTT
ATTCGCGGGCACACAACGACTTCAACGCCGACGAGAGAACGGCTTGATCT
GCTGGCTATCAAAATAAGTCATGGCCTTGAGAGTAGGAAGCAAAACAGAG
CAACAGCCAAACGAAATCCTGTTTGGATTTCCTCTGTATGACCCCGGCTG
GTGCCTCCAAATTATTTTCCAAACGACGGAAGCCAATAGTTTTCGACGTG
CAGAAATAAATGGCATGAATACACAACACATTTTGATCAACTTCGCCTTG
GCCTTGTCTGAAAGCCGTTGTTTCTTTCTCCCTTCTCCCTGGTGCGTTCG
TCACGCGCCTCCTTATGGTCCGCGTGCGTGCAATTTTATCCCAGCATCAC
TACTGCCTCGTGGTTGCTGCAAAGGGCGAAGATACTGTCGCACGCCTGAG
CGGAAACCCCGTGCTCTCGAGGTAATATTTGTTTACTTGTTTGACGGACA
AGTGGTGGCGGAAGACCATCTCTAGGACTGCGGATGGCACATAATCGGCA
TGCAACAGAGTCGACGGTCGTTGGGCTCGATGGATATGTCGCACTCCTTG
CGGTCTTGGAAATTGTGCATAACCGGTACCGCTCCTGAAAGCGAAGATGG
TGTTCTCTGCTTAGAGAACTAAAAGGCAGCGGTTAAGGGGGGTGATATGT
ATGACACGTTTTGGCCGAAAAGTAGTTTGTTTTTAGCTGCGTTACCGTCT
ATCCCTCTACTGTGTAGACGCGCTTCGGTTGACCTTATCTTGCATGTTGG
TTTTGTCTAGAAAATGATCTCCCCGATTGATTGAATACTGATCCTGCTTC
GGCTGAGCAAGTGCGTGGTCGAGGGTTCGCTGGGTCTATTGCGAGTCGCA
TTTGTCGACCAGTCTTGCAAGTGTTGTGGGGGCCAGAAACGTGTAGCAAC
GCATTTCCAGCGTGTAGAAATTGGATGGCGAAGTCCACGGTGATGAGCGT
CAGTATGGAGCAAAATTTATTGAAACACTCGACTGCTCAAGTGGAAAAAC
GACGCCAGCTTGATGACGCGCAGGCGTTACTTCTCAACACTGGAATGCGG
ATTGTTCAAGCTTCCACGGATCAGGCATCGAAACGTGTCGAAGAGAGCAC
CCAGAAAATGAGAAACAGGAGCGTGTGTGCAACGCTACATATCCATCTGG
CAAACCAAAACAAATAAAGTTGCACACTTTGCACAAACACACCATGTGCG
CTCTGCTGGTGGAAGTTCGACCAAGGAAACAACAAATGAAACATACCCAT
TGGCCCAACATCCTCCCAACGTGTTCCTCTCAGTGCACATTCATGCTAGC
CTGCTACTTACAGGCGGAAATGCTTCGGCGGTATTGACGCATGGCTGTAA
TTGTTTCGCCGTTAGGCAGAAACGTGTTTTTTGGGGGTGAGGACTTTGTT
TGGCGGAGGCGGCAAACAGCATTTCGGTGGTAATATTTCGGCGGTAACCC
CATACGGCGGTAATTGGTTTGGCGGTACACGGTAGCGCGTTTTTCGGCGG
TAGCTCTTTTGGCGTAGTAGGAGGTAAAACGGAAAAACGGCTGTAGAACG
GCGGACTACCGGGACTCTCCCAGTAAACCCTTGGTAGACTACTCATTCAA
CGAAGGAACGTTCTGCTGCGACATCACAATTTTTAAACAAGTGAAAAAAC
GGGAAGCTTTTCTATTCACCGTTCAGTGTTTTGTCAGGTTCCTTCGGGGA
GCGTACTACAAGGCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17536:2..2618+

>mRNA_Ecto-sp13_S_contig17536.5278.1 ID=mRNA_Ecto-sp13_S_contig17536.5278.1|Name=mRNA_Ecto-sp13_S_contig17536.5278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17536:2..2618+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAACAAAGCGATTGGCAGGAAACAAGAGCATCAGCTATGACGCCAG
CCCCTACGTGGTTCCTGCCCGCAAGCATGCCAGTGGAGGAGTTCAGTGGG
TGACACTTCAGTCAGTCATCATGTTCGTGTGTGACGTGGACTCTCAACAG
GAATTGTTAGACCCTGCAGAGGTGCGGCGTGCTTCGGAGATCGAAATTCT
GGACGAGGTTGAAGAGTGGGAGCTGATTATGCATCACTACTGCCTCGTGG
TTGCTGCAAAGGGCGAAGATACTGTCGCACGCCTGAGCGGAAACCCCGTG
CTCTCGAGGTAA
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