mRNA_Ecto-sp13_S_contig17534.5277.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17534.5277.1
Unique NamemRNA_Ecto-sp13_S_contig17534.5277.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17534.5277.1 vs. uniprot
Match: D8LGJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ8_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 6.070e-7
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = -1 
Query:   85 FAGGWEEPESTWQWREDPR*DRQ 153
             AGGWEEPES WQWREDPR DRQ
Sbjct:   45 LAGGWEEPESAWQWREDPRQDRQ 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17534.5277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGJ8_ECTSI6.070e-786.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17534contigEcto-sp13_S_contig17534:1427..1609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size183
Hectar predicted targeting categoryother localisation
Exons1
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462912.5898814-CDS-Ecto-sp13_S_contig17534:1426..16091681462912.5898814-CDS-Ecto-sp13_S_contig17534:1426..1609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17534 1427..1609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17534.5277.1prot_Ecto-sp13_S_contig17534.5277.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17534 1427..1609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17534.5277.1

>prot_Ecto-sp13_S_contig17534.5277.1 ID=prot_Ecto-sp13_S_contig17534.5277.1|Name=mRNA_Ecto-sp13_S_contig17534.5277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
LNALPYCATTHKKTQIATSILCYRYQPDLSVSAGVFSPLPSGLRLLPPSR
KNPCCCSPPW*
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mRNA from alignment at Ecto-sp13_S_contig17534:1427..1609-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17534.5277.1 ID=mRNA_Ecto-sp13_S_contig17534.5277.1|Name=mRNA_Ecto-sp13_S_contig17534.5277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17534:1427..1609- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGAATGCCCTCCCATATTGTGCGACCACACACAAGAAAACTCAAATTGC
TACCAGTATTCTCTGCTACAGGTACCAACCGGATTTGTCGGTCTCAGCGG
GGGTCTTCTCTCCATTGCCAAGTGGACTCCGGCTCCTCCCACCCTCCCGC
AAAAACCCCTGCTGCTGCTCGCCACCCTGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17534:1427..1609-

>mRNA_Ecto-sp13_S_contig17534.5277.1 ID=mRNA_Ecto-sp13_S_contig17534.5277.1|Name=mRNA_Ecto-sp13_S_contig17534.5277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17534:1427..1609- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGAATGCCCTCCCATATTGTGCGACCACACACAAGAAAACTCAAATTGC
TACCAGTATTCTCTGCTACAGGTACCAACCGGATTTGTCGGTCTCAGCGG
GGGTCTTCTCTCCATTGCCAAGTGGACTCCGGCTCCTCCCACCCTCCCGC
AAAAACCCCTGCTGCTGCTCGCCACCCTGGTAA
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