mRNA_Ecto-sp13_S_contig1753.5274.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1753.5274.1
Unique NamemRNA_Ecto-sp13_S_contig1753.5274.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1753.5274.1 vs. uniprot
Match: D7G0C8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0C8_ECTSI)

HSP 1 Score: 453 bits (1166), Expect = 1.160e-140
Identity = 233/240 (97.08%), Postives = 235/240 (97.92%), Query Frame = 1 
Query:    4 MVGNSLGGMEDEIGVFCSDVSDEEMLLPCLDFTLKVLSILCGSDEILGSEAGRDVLGQCLADAFYDAGDLDESLDGSQNHPAADEAFVMCFDKLEDFASTVQQLPLAVQLVQVMEAVATARVRCLAAQPAGRGAAARGGQRRGEAPELSPHQKLSSLCLTLLQRDWSEGDLKFVYKSSTLGVLVRAHLRWAKDPLQAVEVMASEVLPLLLETGDCLGPAEGYPTLTAASFSHFYTPLLQA 723
            MVGNSLGGMEDEIGVFCSDVSDEEMLLPCLDFTLKVLSILCGSDEILGSEAGR+VLG+CLADAFYD GDLDESLDGSQN PAADEAFVMCFDKLEDFASTVQQLPLAVQLVQVMEAVATARVRCLAAQP GRGAAARGGQRRGE PELSPHQKLSSLCLTLLQRDWSEGDLKFVYKSSTLGVLVRAHLRWAKDPLQAVEVM SEVLPLLLETGDCLGPAEGYPTLTAASFSHFYTPLLQA
Sbjct:  940 MVGNSLGGMEDEIGVFCSDVSDEEMLLPCLDFTLKVLSILCGSDEILGSEAGRNVLGECLADAFYD-GDLDESLDGSQNRPAADEAFVMCFDKLEDFASTVQQLPLAVQLVQVMEAVATARVRCLAAQPDGRGAAARGGQRRGETPELSPHQKLSSLCLTLLQRDWSEGDLKFVYKSSTLGVLVRAHLRWAKDPLQAVEVMGSEVLPLLLETGDCLGPAEGYPTLTAASFSHFYTPLLQA 1178
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BLAST of mRNA_Ecto-sp13_S_contig1753.5274.1 vs. uniprot
Match: UPI0003F0B6AD (Fanconi anemia group D2 protein-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0B6AD)

HSP 1 Score: 97.4 bits (241), Expect = 9.120e-19
Identity = 47/120 (39.17%), Postives = 81/120 (67.50%), Query Frame = 3 
Query:  879 RLVLVSALRESKKIMQVFLKSAMSMLERAFDSNQDEVLGIVKGLQQTTRQMQSLCAHGKDVGDAAMSKEAPAVKKLLEEFIFRMKSLVQSNDCLGAISVGNLKNRSLDGELLVAPVEESE 1238
            R+ L S L+  +  ++VFL+  M ML+  F  ++++V G++K LQQ+TR +Q LC+H K + D +++   PA+KK LE F++R+K ++  + C  A  +GNLKNR+L GE +++ V ++E
Sbjct:  112 RINLTSILKYGRMFVEVFLRQGMPMLDSIFRHHREDVQGLLKNLQQSTRALQHLCSHTKVLKDVSLTNHVPALKKCLESFVYRVKHMLTIHKCHEAFWLGNLKNRNLQGEEILSQVSKAE 231
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BLAST of mRNA_Ecto-sp13_S_contig1753.5274.1 vs. uniprot
Match: A0A2R5GSX0_9STRA (Fanconi anemia group D2 protein-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSX0_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.540e-17
Identity = 65/175 (37.14%), Postives = 101/175 (57.71%), Query Frame = 3 
Query:  762 DFSPGS--------RLP---TDAVLMRTERMVLMLKLLILFTKGNPTLSRRLVLVSALRESKKIMQVFLKSAMSMLERAF--DSNQDEVLGIVKGLQQTTRQMQSLCAHGKDVGDAAMSKEAPAVKKLLEEFIFRMKSLVQSNDCLGAISVGNLKNRSLDGELLVAPVEESEDEE 1247
            D SPG+        R P     A L   E +V +++  IL T+  PT  ++ +LV A+R+ + I++ F+K AM  L R F   +NQ++++ I +GLQQ+TRQ+QS+C   K   D ++    P ++K+LE  I   K L Q++  L A + GNLK R++DG L   PV E++D E
Sbjct: 1423 DLSPGAEDESVAPRRAPKKSVSATLDDAEALVDLIRKTILLTRMCPT--KKTLLVMAVRQGRAIIERFMKIAMPFLARYFRQPANQNKIVRIFRGLQQSTRQLQSICDSAKSNKDLSLVSAVPKLRKILESLILAAKGLCQASGTLSAFTTGNLKRRNVDGSLRKDPVLEADDTE 1595
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BLAST of mRNA_Ecto-sp13_S_contig1753.5274.1 vs. uniprot
Match: UPI00106ABB95 (Fanconi anemia group D2 protein-like isoform X1 n=3 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106ABB95)

HSP 1 Score: 98.2 bits (243), Expect = 1.960e-17
Identity = 59/183 (32.24%), Postives = 104/183 (56.83%), Query Frame = 3 
Query:  726 INSLLSCWKDRTDFSPGSRLPTDAVLMRTERMVLM---LKLLILFTKGNPTLSRRLVLVSALRESKKIMQVFLKSAMSMLERAFDSNQDEVLGIVKGLQQTTRQMQSLCAHGKDVGDAAMSKEAPAVKKLLEEFIFRMKSLVQSNDCLGAISVGNLKNRSLDGELLVAPVEESEDEEPPERNE 1265
            ++ L+SC+K+    +P  R  +D++ M+ ER+V++   ++L  +          R VL +AL+  +  ++ F+   M  L+    +N+D++ G++K  QQ+TR +Q  C H K   D +++   P +KK LE F+FR+K+++  N C  A  +GNLKNR L G+ +V+     + EE PE  E
Sbjct: 1214 LDCLVSCFKNSLS-APMKR--SDSIEMKAERLVVINVTVRLFHVLVNLVKAFEHRNVLGAALKYGRLFVEAFVSLGMPALDDMLRTNKDDIHGLLKVFQQSTRSLQHFCGHSKVTKDISLTNHVPGLKKSLETFVFRVKAMLAVNQCHEAFWIGNLKNRDLRGQEIVSQQSIGDREEEPEETE 1393
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BLAST of mRNA_Ecto-sp13_S_contig1753.5274.1 vs. uniprot
Match: A0A8B6EZD3_MYTGA (Fanconi anemia group D2 protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EZD3_MYTGA)

HSP 1 Score: 94.0 bits (232), Expect = 3.750e-17
Identity = 46/128 (35.94%), Postives = 82/128 (64.06%), Query Frame = 3 
Query:  894 SALRESKKIMQVFLKSAMSMLERAFDSNQDEVLGIVKGLQQTTRQMQSLCAHGKDVGDAAMSKEAPAVKKLLEEFIFRMKSLVQSNDCLGAISVGNLKNRSLDGELLV----APVEESEDEEPPERNE 1265
            SAL+  ++ +++FL+  M +L+  F +N+++V G++K LQ +TR +  +C H K + D  ++   P +KK LE F++R+K+++  N CL A  +GNLKNR L GE ++    A  ++  D+E PE ++
Sbjct:  186 SALKCGRQFIEIFLRQGMPLLDTMFRTNREDVQGLLKNLQISTRYLHHMCGHSKIMKDVCLTNLVPLMKKCLEAFVYRVKAMLTMNKCLEAFWLGNLKNRDLQGEEILSQTSATSDQGSDDEAPEEDQ 313
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BLAST of mRNA_Ecto-sp13_S_contig1753.5274.1 vs. uniprot
Match: UPI001390095B (Fanconi anemia group D2 protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI001390095B)

HSP 1 Score: 96.3 bits (238), Expect = 7.860e-17
Identity = 54/132 (40.91%), Postives = 83/132 (62.88%), Query Frame = 3 
Query:  876 RRLVLVSALRESKKIMQVFLKSAMSMLERAFDSNQDEVLGIVKGLQQTTRQMQSLCAHGKDVGDAAMSKEAPAVKKLLEEFIFRMKSLVQSNDCLGAISVGNLKNRSLDG-ELLVAPVEESEDEEPPERNEG 1268
            +R VL SAL+  +  ++ FLK  M +L++   S++DEV G++K LQQ+TR +Q  C+H K   D A++   PAVK+ LE F+FR+K+++  N C  A  +GNLKNR + G E+L    + + D+ P    EG
Sbjct: 1269 QRSVLSSALKYGRIFVESFLKLGMPILDQMLRSHKDEVHGLLKNLQQSTRCLQHFCSHTKVTKDIALTNHVPAVKRTLELFVFRVKAMLTLNKCHEAFWLGNLKNRDIQGQEILSQQSQRAADDNPEGEEEG 1400
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BLAST of mRNA_Ecto-sp13_S_contig1753.5274.1 vs. uniprot
Match: UPI0018849036 (Fanconi anemia group D2 protein homolog n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018849036)

HSP 1 Score: 88.2 bits (217), Expect = 1.030e-16
Identity = 42/109 (38.53%), Postives = 69/109 (63.30%), Query Frame = 3 
Query:  900 LRESKKIMQVFLKSAMSMLERAFDSNQDEVLGIVKGLQQTTRQMQSLCAHGKDVGDAAMSKEAPAVKKLLEEFIFRMKSLVQSNDCLGAISVGNLKNRSLDGELLVAPV 1226
            L+ S++++ +F++ A+ MLE      +DEVL I+K  Q + R +  +C H K + DA++    P +KK LE F+FR+K+++  N C  A  +GNLKNR L GE +++ V
Sbjct:   53 LKHSRRLVDLFVRHAIPMLELMLKQQKDEVLTILKNFQLSARYLHHVCNHSKGIKDASLMNHVPFLKKGLESFVFRVKAMLALNGCTDAFWMGNLKNRDLHGEEILSQV 161
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BLAST of mRNA_Ecto-sp13_S_contig1753.5274.1 vs. uniprot
Match: UPI001455BE0B (Fanconi anemia group D2 protein-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455BE0B)

HSP 1 Score: 95.9 bits (237), Expect = 1.040e-16
Identity = 54/160 (33.75%), Postives = 97/160 (60.62%), Query Frame = 3 
Query:  768 SPGSRLPTDAVLMRTERMVLMLKLLILFTKGNPTLSRRLVLVSALRESKKIMQVFLKSAMSMLERAFDSNQDEVLGIVKGLQQTTRQMQSLCAHGKDVGDAAMSKEAPAVKKLLEEFIFRMKSLVQSNDCLGAISVGNLKNRSLDGELLVAPVEESEDEE 1247
            S G R+ T+  L+R    V + ++LI   K       R  L SAL+ +++ +++FL+  M +L++ F +++D+V+ + K LQQ+TR +  +C H K   D +++   PA+K++LE+F++R+K+L+  ++C  A  +GNLKNR L GE ++       D E
Sbjct: 1240 SVGPRM-TEQRLIRWTMAVRVFQILITMLKE---FDARNNLSSALKYARQFIELFLRHGMPLLDKLFPNHRDDVMALFKTLQQSTRNLHHICGHSKVAKDVSLTNHVPAMKRILEQFVYRVKALLTMHNCHEAFWLGNLKNRDLQGEEILTQQTNDSDSE 1395
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BLAST of mRNA_Ecto-sp13_S_contig1753.5274.1 vs. uniprot
Match: A0A4C1TQK7_EUMVA (Fanconi anemia group D2 protein n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1TQK7_EUMVA)

HSP 1 Score: 95.1 bits (235), Expect = 1.410e-16
Identity = 48/133 (36.09%), Postives = 84/133 (63.16%), Query Frame = 3 
Query:  867 TLSRRLVLVSALRESKKIMQVFLKSAMSMLERAFDSNQDEVLGIVKGLQQTTRQMQSLCAHGKDVGDAAMSKEAPAVKKLLEEFIFRMKSLVQSNDCLGAISVGNLKNRSLDGELLVAPVEESEDEEPPERNE 1265
            TL  R  L +  ++S  ++++FL   M ++E  F +  DE+L I+K LQQ+TR +QSLC H +   D A+  + P +++LLE  I+++K+ + +N+C  A  +GNLKN+++ GE++V  +    DE P + +E
Sbjct:  725 TLENRNTLSALFKKSMPVLKLFLSQGMPIIEMRFKTETDEILEILKLLQQSTRFLQSLCCHSRLTKDTALMTKVPQMRQLLETLIYKVKAALAANNCSEAFWMGNLKNKNIRGEIIVTQLNTDSDEMPEDCDE 857
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BLAST of mRNA_Ecto-sp13_S_contig1753.5274.1 vs. uniprot
Match: A0A6J8DLX7_MYTCO (FANCD2 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8DLX7_MYTCO)

HSP 1 Score: 93.6 bits (231), Expect = 1.920e-16
Identity = 45/128 (35.16%), Postives = 82/128 (64.06%), Query Frame = 3 
Query:  894 SALRESKKIMQVFLKSAMSMLERAFDSNQDEVLGIVKGLQQTTRQMQSLCAHGKDVGDAAMSKEAPAVKKLLEEFIFRMKSLVQSNDCLGAISVGNLKNRSLDGELLVAPV----EESEDEEPPERNE 1265
            SAL+  ++ +++FL+  M +L+  F +N+++V G++K LQ +TR +  +C H K + D  ++   P +KK LE F++R+K+++  N CL A  +GNLKNR L GE +++      ++  D+E PE ++
Sbjct:  338 SALKCGRQFIEIFLRQGMPLLDTMFRTNREDVQGLLKNLQISTRYLHHMCGHSKIMKDVCLTNLVPLMKKCLEAFVYRVKAMLTMNKCLEAFWLGNLKNRDLQGEEILSQTSATNDQGSDDEAPEEDQ 465
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1753.5274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0C8_ECTSI1.160e-14097.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI0003F0B6AD9.120e-1939.17Fanconi anemia group D2 protein-like n=1 Tax=Sacco... [more]
A0A2R5GSX0_9STRA1.540e-1737.14Fanconi anemia group D2 protein-like n=1 Tax=Honda... [more]
UPI00106ABB951.960e-1732.24Fanconi anemia group D2 protein-like isoform X1 n=... [more]
A0A8B6EZD3_MYTGA3.750e-1735.94Fanconi anemia group D2 protein n=1 Tax=Mytilus ga... [more]
UPI001390095B7.860e-1740.91Fanconi anemia group D2 protein n=1 Tax=Nematostel... [more]
UPI00188490361.030e-1638.53Fanconi anemia group D2 protein homolog n=1 Tax=Po... [more]
UPI001455BE0B1.040e-1633.75Fanconi anemia group D2 protein-like n=1 Tax=Aster... [more]
A0A4C1TQK7_EUMVA1.410e-1636.09Fanconi anemia group D2 protein n=1 Tax=Eumeta var... [more]
A0A6J8DLX7_MYTCO1.920e-1635.16FANCD2 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8DLX7... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1753contigEcto-sp13_S_contig1753:606..9410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score456.8
Seed ortholog evalue6.1e-126
Seed eggNOG ortholog2880.D7G0C8
Preferred nameFANCD2
Model size1881
KEGG koko:K10891
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000280,GO:0000793,GO:0002682,GO:0002694,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006289,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007127,GO:0007129,GO:0007275,GO:0007276,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009653,GO:0009887,GO:0009889,GO:0009966,GO:0009987,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010646,GO:0016043,GO:0016604,GO:0019219,GO:0019222,GO:0019827,GO:0019899,GO:0019953,GO:0022402,GO:0022414,GO:0023051,GO:0031323,GO:0031326,GO:0031347,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0033554,GO:0034599,GO:0034641,GO:0036297,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0045132,GO:0045143,GO:0045580,GO:0045589,GO:0045595,GO:0045619,GO:0045786,GO:0045930,GO:0046483,GO:0048285,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048731,GO:0048854,GO:0048856,GO:0050727,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051052,GO:0051090,GO:0051171,GO:0051239,GO:0051249,GO:0051252,GO:0051276,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060322,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0070182,GO:0070192,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0090329,GO:0097150,GO:0098727,GO:0098813,GO:0140013,GO:1901360,GO:1902105,GO:1903046,GO:1903047,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000348,GO:2001141
Exons12
EggNOG free text desc.DNA polymerase binding
EggNOG OGsKOG4712@1,KOG4712@2759
Cds size726
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462912.3109658-UTR-Ecto-sp13_S_contig1753:605..6081681462912.3109658-UTR-Ecto-sp13_S_contig1753:605..608Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1753 606..608 +
1681462912.3884554-UTR-Ecto-sp13_S_contig1753:4633..46351681462912.3884554-UTR-Ecto-sp13_S_contig1753:4633..4635Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1753 4634..4635 +
1681462912.3980653-UTR-Ecto-sp13_S_contig1753:5084..51741681462912.3980653-UTR-Ecto-sp13_S_contig1753:5084..5174Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1753 5085..5174 +
1681462912.407451-UTR-Ecto-sp13_S_contig1753:5626..57311681462912.407451-UTR-Ecto-sp13_S_contig1753:5626..5731Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1753 5627..5731 +
1681462912.4202292-UTR-Ecto-sp13_S_contig1753:6416..65031681462912.4202292-UTR-Ecto-sp13_S_contig1753:6416..6503Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1753 6417..6503 +
1681462912.4327927-UTR-Ecto-sp13_S_contig1753:7071..71841681462912.4327927-UTR-Ecto-sp13_S_contig1753:7071..7184Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1753 7072..7184 +
1681462912.4465308-UTR-Ecto-sp13_S_contig1753:7897..79921681462912.4465308-UTR-Ecto-sp13_S_contig1753:7897..7992Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1753 7898..7992 +
1681462912.4565682-UTR-Ecto-sp13_S_contig1753:8750..94101681462912.4565682-UTR-Ecto-sp13_S_contig1753:8750..9410Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1753 8751..9410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462912.327525-CDS-Ecto-sp13_S_contig1753:608..7131681462912.327525-CDS-Ecto-sp13_S_contig1753:608..713Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1753 609..713 +
1681462912.3398483-CDS-Ecto-sp13_S_contig1753:1831..19251681462912.3398483-CDS-Ecto-sp13_S_contig1753:1831..1925Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1753 1832..1925 +
1681462912.34802-CDS-Ecto-sp13_S_contig1753:2414..25511681462912.34802-CDS-Ecto-sp13_S_contig1753:2414..2551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1753 2415..2551 +
1681462912.3559744-CDS-Ecto-sp13_S_contig1753:2876..30551681462912.3559744-CDS-Ecto-sp13_S_contig1753:2876..3055Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1753 2877..3055 +
1681462912.3672602-CDS-Ecto-sp13_S_contig1753:3827..39091681462912.3672602-CDS-Ecto-sp13_S_contig1753:3827..3909Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1753 3828..3909 +
1681462912.3796406-CDS-Ecto-sp13_S_contig1753:4504..46331681462912.3796406-CDS-Ecto-sp13_S_contig1753:4504..4633Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1753 4505..4633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1753.5274.1prot_Ecto-sp13_S_contig1753.5274.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1753 609..4633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1753.5274.1

>prot_Ecto-sp13_S_contig1753.5274.1 ID=prot_Ecto-sp13_S_contig1753.5274.1|Name=mRNA_Ecto-sp13_S_contig1753.5274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
MVGNSLGGMEDEIGVFCSDVSDEEMLLPCLDFTLKVLSILCGSDEILGSE
AGRDVLGQCLADAFYDAGDLDESLDGSQNHPAADEAFVMCFDKLEDFAST
VQQLPLAVQLVQVMEAVATARVRCLAAQPAGRGAAARGGQRRGEAPELSP
HQKLSSLCLTLLQRDWSEGDLKFVYKSSTLGVLVRAHLRWAKDPLQAVEV
MASEVLPLLLETGDCLGPAEGYPTLTAASFSHFYTPLLQAR*
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mRNA from alignment at Ecto-sp13_S_contig1753:606..9410+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1753.5274.1 ID=mRNA_Ecto-sp13_S_contig1753.5274.1|Name=mRNA_Ecto-sp13_S_contig1753.5274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8805bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1753:606..9410+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATGGTAGGGAACAGCCTCGGAGGAATGGAGGACGAGATCGGGGTGTT
TTGCTCCGATGTCAGCGACGAGGAAATGCTCTTGCCTTGCCTCGATTTCA
CTCTCAAGGTGTGTGTTCGTGTGTTTCTTTTAATTTGTTCCATCGATTGA
ACTCGGCGGCTGATCAATGAGCATCCGTCGACATGTATTCGACCAAGCAA
GGCGTCAGTTTTGGTGAAAACGCCACCGATGAAAGCGTACGTGTGTGTGG
AATTGGCACCCACCAAGTGAATCGGCTGGCCAATGAAGGCCTCGCACCGT
TTATCTGTGCTAGCATTCGATATGCCATCGGCGGCTCACCAATGAACTTC
CGCCAATCTTGCAGTAGAAAAATCAGCGTTCAAGTGGTGGGCGCTGAACT
TGTTTCTTTCGCAGGCATCGACGCGCCAACCAATGCCAACGCATGTGTGT
ACATGTGTGTGGGCTTTTTTTTGCCTCCCAAGTATTTCGGTCGCTTCTCG
CAGCGCCAGACTATGTCACGGTCTTTTGCCCTCTGTCATTTAGAGTGTGT
ATTCGCGTTAACTTGGCCTCGCATAATCTTCGTCATCGGGAAATTACCAA
GTCGATTTTTTTTTCTCTCTGAAGATGAGTGCGTGGAAATTGGTCGAGCA
AAGGGTGTTGATCACAGATCACGGCGATGAATTATTGAACACTAGGCTCC
ATGAGAAGGTTAAAATAACTCCTCATACAAATGAGCCCATTTAATCGACC
ATTTAGGCGATCTGACGAAACGACTAAGACAGTATTGTGCCAGCATCGAG
AGAGTCGCGGCATCACCTGCCGCGTTCATGAAGACTACTCCGTTACCCAC
TAAGACGTCGCAAGAAGCACTCGGCTCGGCAAGAACACGTCAGATAGTCA
GTGAGAATGACTCGGACAGACGCAAAGAAAACTTGTCCGTGATCCGAGGT
TGGCGCGCGAGCCTTCTCCGAACTCTGTCAGTGAAGGGGACTGGCGACGT
CTGACCTTCGAGGCCCTACATTGTACAAGTTTCTGCTCTTGGTCCAACCG
CATTTGTGCAGACTCTTCACTGATTGACCCTCTTTGGGTAGAACTTGGAG
TGTAGCCACGACGGTCATGTTCAGTTGGACCGGTACAGACGTCAGACCTA
ACCCCTCATCCCACGCTCACTGTCACAAATGTTGATGTATCACATGTTGT
CGTTGTATCACATCGCATCGCGCCAGGTCTTGAGCATCCTTTGCGGATCG
GATGAGATTCTTGGTTCGGAGGCCGGCCGCGATGTCCTCGGGCAGTGCTT
AGCAGACGCCTTCTACGATGGTATGTATCAGGAAGACTTGTGAAATGGCC
TACATATCGATTTAATTTAACACACACGCACAGTGAGCCATATTGACAGA
CATAATCAGTATTGAAGTAAAATGCTGGAGGACATCTCTCTGAGATGAAT
GTATGCATTTGAGGTACAGTGTGCATTCCGGTAAGGGAAGTGCTGATTAG
AAGACAGAACAGATTTTCAACGTGAAAACGTTTTTCACATCAACGGCAGG
CAGACAAGCACTTCGAAGTATTTCGCCTCTTGTGCTGTTTCATTCAATCT
TGCACGGACCGCTTCGAATGGAGAATGGCCCACCCTGAACACGAGCGCTG
AATCAGCACGCGCCCACTGTTTGGTCAGGAAAAGCGCTGTCAATCTGGTG
GCTTTTGACTCCGGAGAATGAAGTATTCTTTCTGATTGCTAGACTTGTTC
TTTCTCCGTATCCAACAATTTTGCTTTGGTGTTCGTCTTTTTTCCGGGGG
GGGGGAGAGCAGGCGACCTGGACGAGAGCTTGGACGGGTCGCAGAACCAC
CCGGCGGCGGACGAAGCATTCGTCATGTGCTTCGACAAGCTTGAGGACTT
CGCCTCCACGGTGCAGCAGTTGCCTCTGGCGGTCCAGCTCGTTCAGGTGT
GTTGTCCTTGTCGTCGTCATTGTTGTTGTTGCTCTAGTGTTTTTTTGTTG
ACAATTCGTGTACGGGCTGGGGCGCGTGAATGCCTCTGAAATTTCTGTGG
TCGCGTAGAATGTCGTTGGATGTTTTTTTTGCTTCATTACACCGATTGCT
GTCATCTGTCTGTCTTTCTGTCGATCTGCTTCTCTCTCTCGCTCCCTCCC
TTTCTCTCTCTCCCTCCCCCTCACTCCGCCCCCCCCCCCTATCTCTATCT
CTCTCTCTCTCTCTCCCTGTGTGTCCCTCATTCTATTCTCGTTCTCCTGC
AATCGGGCTTTGATCAATCAGGTCATGGAAGCCGTGGCGACAGCAAGAGT
TCGCTGCCTCGCCGCTCAGCCAGCCGGAAGAGGAGCGGCGGCAAGAGGAG
GCCAGAGGAGAGGAGAAGCGCCCGAGTTGTCTCCCCACCAAAAGCTGTCC
TCGCTGTGCCTCACACTGCTACAGCGGGATTGGAGCGAGGGCGATTTGAA
GTGAGTGCCAATGACAACAATTATTTTGTCGAGCTCACACTTCCTTCTCT
TTCCTTTGTGTCGCATGAACGGAAGAAAATGGTGTTTGCTGTGTCGTGTC
AAGCTAGTGTACTCGGTATTGTTTGTCGGCCATGCTCAGCGGGCAACACT
TGCCACCTTCCCCTTATTTTTGGTGCGCTACTTTTCAGTCTTGGTGTGGT
CTCAAAGCTGTGCTAGACACGAGTTTTGCCGACTCACCTATTCTATTCTC
AAACTGTTGGTCGTTGGGCTGATTCCGAAGTTTCTCGGGAATATATTGCA
AGAGCGCGAAGCACTGTTGAGGGACGTATATTGCCTGCCGGCAGCAGAGT
CAGCTTGTGTCAAGAGTGCGACGTACTCCCGCTCTCGCCTCTATTTGGTG
TTGGAGCAAGTATTTTAGCGGTCTTTCACATCGACACGGTTTGTATTTTT
TTGTTCCAACGGTTCATCACTATGTGATGTATACACAACTGCCTTTCCCC
GTGGGATGCAACCCAGACGTTTATGGCGTACGTTTTCAGCGCAGTTTATC
GACAGCACCACCGAGACTAAACCACCATGCAATGCGAAGAAATATGCAAT
ACTTCACTTGTTGTGTACTTGTGCTCCCCGGCAGTCCTCCAACTAAGGTT
ACTTCATGCACAGCTGGTGAGGGGTGAGCACTCACTCGCCCTTTCGTCAA
CTCAAGCGTCAAGCTGTGGTTGGTTCACTCAAAACATGTTTTTATTTTTT
CTCGTTCTTGTTGTTCGGCCAGGTTCGTGTACAAGAGCTCGACCCTCGGC
GTGCTGGTCAGGGCACACCTGCGCTGGGCGAAGGACCCGCTCCAGGCGGT
GGAGGTAGGCGTGTTAAGCGCTTGCGGCCCGCAGAAACGAAAATTCACTC
TCTGCGGTCGAAGCCTTTTTCGCTGTTTCGTGATCAGGAAAGTAGAAGTA
GCCTTCTATTACGTAGCAGAGTTTGATGTGGTCGGGGATGTAGCTGCGGT
GGGTTTGATCGTGGAGCGGACCTGCGCTTACGCTTTCTGCTCGAGTCCTT
GCGATCTGTAATCCACGCGTACCCTGTCTGTGAATCGCCAGGAGGCGTTG
TTCTTGCGCTAGACCACCGCGTTCTCGCCGAAGACTTTCGACGTCTCTGC
TACACGGGTGATTGAACCAGCTGCGGGTCCGTAGCTGTTTCCTCCCCAAA
AGGAAGGGGAACTTCGCTATGTCGTTGTTGAAAGTCGCCGTGTATTCGAC
CGGGTCATATTTCTGCAGCAGGTGTTGTCGACAACGCGTGCTGCATGTAC
GGTCGGCTTGTCCTGGGCCCACTATGGTCTTAAAATGATATTTTTTTTCG
TTCCTCGCCCCAACGTTCTTACGGACATGGGGGAATTGAAGAGTGGCATA
TGTTAGCCATTTATTGCGTTCTTTTCCTGTTGCTCATGGGCTGTTTCAGG
TGATGGCATCGGAAGTGCTCCCGCTACTGCTTGAGACCGGGGACTGCCTG
GGCCCGGCGGAAGGCTACCCAACCCTCACTGCCGCATCCTTCTCGCACTT
CTACACCCCGCTCCTTCAGGCAAGATAAACGTTTGTGTGTCATTGCTGTT
GTTGGCGGAGGAAATGGTGGTACTTCTGACGCTGCTGGTGCTTCCGAAGC
GTGCGGTGCTCTCGCTTGTGGTTGGTTCCTAATTCTTGTGGGTTTTCGCA
GTTTCTACCTGGTCTGGGGTCTTGCCTCTCCACGTGAAGACATTCGGGGT
CAAATGAACTAGATTGCTTCAGCGTTGTACGAGTCAACGGTGTTTTGGGC
GAAAGGTTCAGCCGTCCTTTGATAGGGCTTCCTCATGAAGAAATACATTA
CATTCCTACAAATTAATTTCACGGCAACGAAGAACCACTATGAACCAACT
TCATTGCACAGCTCTCTGGTAGGCAAGAACAGATTGGATCTCGAGTCTAT
GTGCACCATCAAGAGAAAATTTCCCTGCATATATGTGAGCAAGTGCGGTA
TTTGGGTGGTGTGTTTTTTTCTTCTGCAGTCGTTGCTGTCCTGCTGGAAG
GATCGGACGGACTTCTCACCTGGGTCCAGGCTACCTACAGACGCTGTTCT
CATGCGGACGGAGAGGATGGTGAGGCGTTCGAGACGAAGACGAAACCGCG
ACTGCTGGAAACAAACGTTGCTTTGTGTTGAGCTGGCAGCACTTCTTGCG
ATACCGTACCGCAGTACCGCCCAGCTTTTAAGACAGAAGGTCTTGGAAAA
ATTCGGCGTCAACCTTTCCGGCGAAAATTGAAAATCGGGATGCCAAGCAG
GGGCCAGGAACGGGCCCACCACAACTCCCAAATATGATAGTCTGTGCTTG
ACGGTGGGGTAAAATCACAAACTTATATTTTCCCCGAAGGTTGACGTCTT
TGCGTTTCATACCACTTTCGCTGGCGTGCACCGCATAGATGACGCAACGC
AGTGCGATGCAGCACAACGCGGCGCGATCTAACCCAGCGGTTCAGCGGTT
TTTGATAGCTGTTTGCCGAAAAAACATGACGCGGTGGAATTCATTCGACG
GACATTTTGCTGCCGATACAGGTGCTCATGTTGAAGCTGCTCATCCTCTT
CACCAAAGGCAATCCTACCCTATCGAGGAGGCTGGTGCTCGTGTCCGCGC
TGCGCGAGAGCAAGAAAATCATGCAGGTCCGAATTTCGGGGGCTACTTGT
AAACTGTATTTATCCTGCTGTGGTCTCGCGTGTTTTTGTGGGGGACTCGG
GTGCATTTCTTGAGTTACTCGGCGCGAAGACAGAGAGGTCGAAGGGCCCG
AATATGCGGCTGAATGCTGGTTGGTCGAATACTTCGGCTGGCGGGTGGTG
CCTGCCAGGGTCGAAATATCTATGCGTACCTTTGTCTTTTGGTAGTGCTT
CGTTGCACATGCGGGACACGCACGTGGCGGTAGTCTTGCGACCCGAGAGC
ATGTGTTGGATTCGACGCATCAATGGGCGCGTAACGCACATCTCCTAGCT
ACTAGTGCAACCGAGTTGGTCTTGTTGCTTGGTGTTGGGGAGCTTTCGGA
CTGCACACATGCTTCGTGATTAGCATGTGCTGGACTTGGTTCTACCTGCG
ACCGTGGTTATCAGCTCTTTCTGCTCAAAGGTTGCAGCAGTTGCTTGCGT
AGACAATAGTACCACTACCAGCAGCAGCAGCAGCAGCCCCGGCTACAGCG
ACGACGACAACATCGGCGGTAGCTAGCAATACCACAGCTCTTTGTGCTTT
TTTTCATCGTCAACAGCCGTCATGGCTGTTTGGAATGCTTTACTCATCCC
ATGAGGAAGGAGATGTTTTTTGTCATCGCGCATGTTCTGTGGGCGCCAAA
TTTCTGTGCAGGTGTTTCTGAAATCCGCCATGTCTATGTTGGAGAGGGCC
TTTGACAGCAACCAGGACGAGGTTTTGGGCATCGTCAAGGGTCTGCAGGT
ATGGAGATGCTGCTGTGCTGTTGTTTTTGATCAATTTTGTTGCCATGATC
GCAGTCTTTGGTACCGCTTTTGATGTCTTTCGTTTTTTGTCGCTTTGCGT
TCTGTCATAAGTATAACTACTGCCTCATTGTCAACTCATGTGTGGCGCCA
CCCTCATTCAGCGATAAATGACGATGTTTTGGGGCACGGTGAAGGTCGTT
CGTTCCGCCGAACGATTGTGTCCGAACCTGAACGATCTGCAAAGTGCATA
CGCCTTTTTTCTTCTTCGGCCCAGTCTGAACTAGCCGTGTTGAGAAACAG
TCTTCAGCCTGGTGTCATGGTTTACGTCTTTCCATTCCTAGGGTGTCAGC
GCCGTCTTCTGTTACAGCAGAAGCGAAACCATGGGTGAACGTCCGAATCG
GTACAGCAGACCGCCAGGATATTGCTGTACGTGTGACCAACTACCTGGAA
ATGAAAAAAATCTCTTTGGACAGAAGGTTGCCGTTGTTTGTTTCCCTTCG
TTTCGTGTATTTCCCCGACCCTCCATCTCTGGTTGTGAATTGTCGCCGTG
CTTGCTTGATCGTCAGCAAACAACCAGGCAGATGCAGAGTCTCTGTGCGC
ATGGCAAGGACGTCGGGGATGCTGCGATGTCAAAGGAAGCTCCGGCCGTG
AAAAAGCTCCTAGAGGAATTCATTTTCAGGTTGGCTCCCCCCCCCCCCCC
CCCCCCCCTCTTCACTACCAACCACAAAAGAAAACTCCTTCCCGCCCCCT
TNNNNNNNNNNGGGGTGCTGCGATTGCAAAGGAAGCCCCGGCCGTGAAAA
AACCCCTTGAGGAATTTTTTTTTAGGTTGGTCCCCCCCCCCCCCCCCCTC
GATGTTTCACATGAGCACATAGCAGTGTATCCTTCGTGCGTCCGTGCTTG
TCGTTCGTTGATCGGGGCGCCTCCATGTCCAAGAAAAATGTTGTCGGTTG
ACAGTTGTTTTCGCCTTGACGTTCACCATTACAGAAAAACTCGCGATTCG
AAACACGTCCCCGTGACTGCAAAACGCTGCGTGTGGTCCCTTTGACTGCG
TGTTTTTCAACTTCGAGTGATCTATTAGGTCTGAGCCGTCAATTGGTGTC
TGGATGATGAATGTTGATGCAAAGCGTTGTAACAACACAACACCTGTTCG
CCAAGAAACTACCCTCGAGCTGCAGAGTACGTCGACGCCAAGCAAGACAC
GTATTTTTGTATCACCGCCGTTGATTCATGTGCAAGACTGACGAATAAGT
TCGTCGGCGCGGAGTTTTTCATCTGTCACCCACTCCGCCACCTGCTGATT
TCTGGGCAAACCGCTGTCCCGACTTAACGCTCCTGCCATCATGGATGTCG
GCTATGTCGTTGACGCCCTTCGGCATCCATTGATCACAACAGGATGAAGT
CTTTGGTTCAGTCCAACGACTGCCTTGGGGCGATCTCTGTGGGGAATCTG
AAGAACAGGAGTCTCGACGGAGAGCTGCTCGTCGCACGTGAGTAGCGAAC
CATAGCAGAGTTTGTGTTTTCTTTGTCTTTTCGTGACACGCGTGTTTGCT
CTTTTTTTTTTACAGTCTGCACACTTGACCTTTCTTTCCGTGCAATAACT
GCTGTTAAGACCAATGGGCTCGCTAGCGATTTGACTTGCTCGTGTACGCC
TGTGGGGCTTGCGCGCTAGACTATTTTATCAGAATGTATCCCTCCTCTAG
ATTTCACAGGTTATTTGCGGCCTTGACAAGTTGTTTTTTTATTACATTGC
TTTTGGTCTTTTTTTTTTCACTTGCGTCAGTTATACGTAGTTTTGGTCGT
CCCCGAAAATTCCACTCCTCGGAAGCATATTGTACACACATGGAGAATCG
TTTACTATTTGTACCGTTGTTTTAACTTCCCGCTTTCTTTTGCCTCGATC
GCGTAGCACTTCCTTGGCGTGTTTGCCGGTTTGGTTTTGCATGGGACCCG
CCAAGGAAAGAGGGTCTAGACAGATGCCATACTGTCGCACAGTCATGCCT
ATAATCTTCATTAACCGCACATTGCTCGCGTTTGGCGAAGGACAACAGCT
GCTGTCGTTGAGCTCCTCGCAGATGAGGTAGTTCAATTCATTACTTGCCT
GGTGGAGTCGTTACCACAGAGGTCCAACGTGGAGAGTGTCAGGAAACATG
CCTCTTGACCCTACGAAATTTTGCTCATCTTGTTTGTTGCTGACTTGGCA
TGTTGCGGTTTGTTTGTTTCTTTTTTCTTTTTGTCTGCTGCATAGCGGTG
GAGGAGAGCGAGGACGAAGAGCCGCCAGAGAGAAACGAAGGAAACGAGGA
TTCAGACTCGGACTCTTCGGACTCCGATCCGGGTGGAGCGGGGAAAAGAC
GGGTGCAAGCAGACGACGGCGACAACCCTGAGGAAGAAGAAGACGAGGAA
GAGGAAGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGACGGGGATGAGGG
GGAAGCCACCATGCCGCTCGTGCAGAACAATGACAGCGGCTCTGAAACTG
ACAGCGACGGGTAGTTTAGCGAACGGTGTTGGCAAGCTAGTCAGCCTTCG
GTAGTTTAGCGAATGGTGTTGATAAGCTGGTCAACCTTATCGAGGCCAAG
AGAAGTCCATGAGTGTGCGCGTGCGATGGTTAACTGGCACAGCACGTATG
CGACTATGCTGTATTCTACGTCGTATTCAGGCCTTTGATCTCTCTCTTCC
CTTACTCGGTGCTGAGTGAGTTGTGGACCAGCCGAAACGTTTCTGTGATT
GGTTGTATGAGCTCCCCCTCCCTCTGCGTGACGTACTTTCGTTATTTCTA
AACCCGGGAGTTGCTTGTTCACAAATAGCTCCATGTTTTCTCTATCGAGT
GATAAGCCTTTACAACCAACTACACCGATGGTTCAATGCTTTCCTAAATT
TCTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1753:606..9410+

>mRNA_Ecto-sp13_S_contig1753.5274.1 ID=mRNA_Ecto-sp13_S_contig1753.5274.1|Name=mRNA_Ecto-sp13_S_contig1753.5274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1753:606..9410+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAGGGAACAGCCTCGGAGGAATGGAGGACGAGATCGGGGTGTTTTG
CTCCGATGTCAGCGACGAGGAAATGCTCTTGCCTTGCCTCGATTTCACTC
TCAAGGTCTTGAGCATCCTTTGCGGATCGGATGAGATTCTTGGTTCGGAG
GCCGGCCGCGATGTCCTCGGGCAGTGCTTAGCAGACGCCTTCTACGATGC
AGGCGACCTGGACGAGAGCTTGGACGGGTCGCAGAACCACCCGGCGGCGG
ACGAAGCATTCGTCATGTGCTTCGACAAGCTTGAGGACTTCGCCTCCACG
GTGCAGCAGTTGCCTCTGGCGGTCCAGCTCGTTCAGGTCATGGAAGCCGT
GGCGACAGCAAGAGTTCGCTGCCTCGCCGCTCAGCCAGCCGGAAGAGGAG
CGGCGGCAAGAGGAGGCCAGAGGAGAGGAGAAGCGCCCGAGTTGTCTCCC
CACCAAAAGCTGTCCTCGCTGTGCCTCACACTGCTACAGCGGGATTGGAG
CGAGGGCGATTTGAAGTTCGTGTACAAGAGCTCGACCCTCGGCGTGCTGG
TCAGGGCACACCTGCGCTGGGCGAAGGACCCGCTCCAGGCGGTGGAGGTG
ATGGCATCGGAAGTGCTCCCGCTACTGCTTGAGACCGGGGACTGCCTGGG
CCCGGCGGAAGGCTACCCAACCCTCACTGCCGCATCCTTCTCGCACTTCT
ACACCCCGCTCCTTCAGGCAAGATAA
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