prot_Ecto-sp13_S_contig17527.5273.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17527.5273.1
Unique Nameprot_Ecto-sp13_S_contig17527.5273.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length274
Homology
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: D7G4K9_ECTSI (Cyclin D2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K9_ECTSI)

HSP 1 Score: 398 bits (1023), Expect = 1.780e-132
Identity = 220/275 (80.00%), Postives = 224/275 (81.45%), Query Frame = 0
Query:    1 RFALASTAARAIVSSHAAVMICEGYSEIRLGAREPSLSSSSRRLLSFGGPTTAGARGGDDAGHGVSSTRAAGGAVAASVAGLPSDTHNDNNN-SNRDLLGQGSGSRTVRPWSVDEGSPRGGPVAGGGPAKAARYRRSDKHLALRALHHLECCGDLLIRQLKTLPRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPAQVHSTFN 274
            RFALASTAARA+VSSHAAVMICEGYSEIRLGAREPSLSSSSRRLL FG                                             SN DLLGQGSG RTVRPWSVDEGSPRGGP  GGGPAKAARYRR+D+HLALRALHHLECCGDLLIRQLKTLPRLDIFQ LQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNP+QVHSTFN
Sbjct:  128 RFALASTAARAVVSSHAAVMICEGYSEIRLGAREPSLSSSSRRLLPFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISNSDLLGQGSGGRTVRPWSVDEGSPRGGPGQGGGPAKAARYRRNDQHLALRALHHLECCGDLLIRQLKTLPRLDIFQSLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPSQVHSTFN 402          
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: A0A6H5JEY8_9PHAE (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY8_9PHAE)

HSP 1 Score: 374 bits (960), Expect = 1.380e-121
Identity = 208/274 (75.91%), Postives = 215/274 (78.47%), Query Frame = 0
Query:    1 RFALASTAARAIVSSHAAVMICEGYSEIRLGAREPSLSSSSRRLLSFGGPTTAGARGGDDAGHGVSSTRAAGGAVAASVAGLPSDTHNDNNNSNRDLLGQGSGSRTVRPWSVDEGSPRGGPVAGGGPAKAARYRRSDKHLALRALHHLECCGDLLIRQLKTLPRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPAQVHSTFN 274
            RFALASTAARAIVSSHAAV+I EGYSEIR+GAREPSLSSSS RLL FGGP  A                                          DLL QG G RTVRPW VDEGSPRGGPV GGGPAKAAR RR+D+HL LRALHHLECCGDLLIRQLKTLPRLD+FQ +QS AVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGG QVMNT EAIHICDSQY P+QVHSTFN
Sbjct:  259 RFALASTAARAIVSSHAAVIIREGYSEIRIGAREPSLSSSSARLLPFGGPAAAXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXDLLAQGGGGRTVRPWLVDEGSPRGGPVQGGGPAKAARCRRNDQHLVLRALHHLECCGDLLIRQLKTLPRLDMFQSVQSGAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGGQVMNTPEAIHICDSQYTPSQVHSTFN 527          
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: A0A2V0PPT4_9CHLO (Cyclin-A2-like n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PPT4_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 1.730e-7
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 0
Query:  183 LTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPAQV 269
            +T HMRA+LVDW VEVA ++RL +  LH TI+ LD  L+KV + R +LQL G+ C M               E   I D+ Y+P Q+
Sbjct:  130 MTPHMRAILVDWLVEVALEYRLCSDTLHLTIALLDRFLSKVPISRDQLQLAGIAC-MWAASKYEEIYAPTAREFCFITDNTYSPEQL 215          
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: A0A6A1W9N1_9ROSI (B-like cyclin n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1W9N1_9ROSI)

HSP 1 Score: 58.9 bits (141), Expect = 3.060e-6
Identity = 45/135 (33.33%), Postives = 63/135 (46.67%), Query Frame = 0
Query:  143 RALHHLECCG--------DLLIRQLKTLPRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPAQV 269
            R L   +CCG        +L + +    P  D  + +Q          + A MRAVL+DW VEVA ++RL    L   ++ +D  L+  +V R RLQLLGV C MI  +    C   N  E  +I D  Y   +V
Sbjct:  234 RNLMDPQCCGTIAYDIYKNLRVSEANKSPSTDFMEMIQKE--------INASMRAVLIDWLVEVAEEYRLLPDTLFLAVNYIDRYLSGNSVKRQRLQLLGVACMMIAAKYEEIC-APNVDEFCYITDHTYEKQEV 359          
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: A0A0D2NRM8_9CHLO (Cyclin-A1-1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2NRM8_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 3.730e-6
Identity = 48/145 (33.10%), Postives = 66/145 (45.52%), Query Frame = 0
Query:  125 GGPAKAARYRRSDKHLALRALHHLECCGDLLIRQLKTLPRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPAQV 269
            G P   A Y R         LH +EC         +  PR    +R+Q        Q +T HMRA+LVDW VEVA ++RL +  LH T++ LD  L+   + R +LQL G+ C M            +  E   I D+ Y P Q+
Sbjct:   37 GNPLACAEYARD----IFDHLHEIEC-------DCRADPR--YMERVQ--------QDMTPHMRAILVDWLVEVAMEYRLCSDTLHLTVALLDRFLSVARIGRDQLQLAGIAC-MWAAAKYEEIYAPSAREFCFITDNTYTPKQL 159          
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: A0A8C4ACX5_9TELE (Cyclin-F n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4ACX5_9TELE)

HSP 1 Score: 58.2 bits (139), Expect = 6.230e-6
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 0
Query:  187 MRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQY 264
            MR +LVDW VEVA     S++ LH T++ +D  L + AVP+ RLQLLG+ C ++ T+      ++   EA+ + D+ Y
Sbjct:  307 MRYILVDWLVEVATMKDFSSLTLHVTVACVDRYLAQRAVPKARLQLLGIACMVVCTRYMSK-DILTIREAVWLTDNTY 383          
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: UPI0002C2EBEE (cyclin-A1-4-like n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C2EBEE)

HSP 1 Score: 57.8 bits (138), Expect = 7.240e-6
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 0
Query:  154 LLIRQLKTLPRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQY 264
            LL  ++   P +D  +R+Q+         + A MRAVL+DW +EVA +FRL    L  T++ +D  L+  A+ R RLQLLGV C MI  +      V    E  +I D+ Y
Sbjct:  245 LLESEVNRRPAMDFIERVQND--------IDARMRAVLIDWLIEVAEEFRLVPDTLFLTVNYVDRYLSGNAIKRQRLQLLGVACMMIAAKYEE-IHVPEVEEFCYITDNTY 346          
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: UPI000C875A44 (cyclin-A1-4-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C875A44)

HSP 1 Score: 57.4 bits (137), Expect = 9.300e-6
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 0
Query:  154 LLIRQLKTLPRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPAQV 269
            L I + K  P +D  +++Q          + A MRA+L+DW VEVA ++RL    L+ T++ +D  L+   V R RLQLLGV C +I ++    C      E  +I D+ Y   +V
Sbjct:  206 LRIAETKKRPSMDFIEKIQKD--------INASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSTNEVNRQRLQLLGVACMLIASKYEEIC-APQVEEFCYITDNTYFKEEV 312          
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: A0A068URS1_COFCA (Cyclin N-terminal domain-containing protein n=5 Tax=Coffea TaxID=13442 RepID=A0A068URS1_COFCA)

HSP 1 Score: 57.4 bits (137), Expect = 9.690e-6
Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 0
Query:  158 QLKTLPRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQY 264
            ++K  P +D  +R+Q          + A MRA+L+DW VEVA ++RL    L+ TI+ +D  L+   + R RLQLLGV C MI ++    C      E  +I D+ Y
Sbjct:  246 EVKKRPAIDFMERVQKD--------INASMRAILIDWLVEVAEEYRLVPETLYLTINYIDRYLSGNVMDRQRLQLLGVACMMIASKYEEIC-APQVEEFCYITDNTY 343          
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: A0A371FP54_MUCPR (B-like cyclin (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371FP54_MUCPR)

HSP 1 Score: 57.4 bits (137), Expect = 1.210e-5
Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 0
Query:  163 PRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPAQV 269
            P LD  +++Q+         L A MRA+L+DW VEVA ++RL    L  T++ +D  L+  A+ R +LQLLGV C MI  +    C      E  ++ D+ Y+  QV
Sbjct:  302 PSLDFMEKIQND--------LNASMRAILMDWLVEVAEEYRLLPDTLFLTVNCIDRYLSGNAMNRQQLQLLGVACMMIAAKYEEIC-APKVEEFCYVTDNTYSKEQV 399          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4K9_ECTSI1.780e-13280.00Cyclin D2 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JEY8_9PHAE1.380e-12175.91Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A2V0PPT4_9CHLO1.730e-742.53Cyclin-A2-like n=1 Tax=Raphidocelis subcapitata Ta... [more]
A0A6A1W9N1_9ROSI3.060e-633.33B-like cyclin n=1 Tax=Morella rubra TaxID=262757 R... [more]
A0A0D2NRM8_9CHLO3.730e-633.10Cyclin-A1-1 n=1 Tax=Monoraphidium neglectum TaxID=... [more]
A0A8C4ACX5_9TELE6.230e-639.74Cyclin-F n=2 Tax=Denticeps clupeoides TaxID=299321... [more]
UPI0002C2EBEE7.240e-636.94cyclin-A1-4-like n=1 Tax=Fragaria vesca subsp. ves... [more]
UPI000C875A449.300e-634.48cyclin-A1-4-like n=1 Tax=Dioscorea cayennensis sub... [more]
A0A068URS1_COFCA9.690e-636.45Cyclin N-terminal domain-containing protein n=5 Ta... [more]
A0A371FP54_MUCPR1.210e-536.45B-like cyclin (Fragment) n=1 Tax=Mucuna pruriens T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006671Cyclin, N-terminalPFAMPF00134Cyclin_Ncoord: 176..269
e-value: 7.2E-11
score: 41.9
NoneNo IPR availableGENE3D1.10.472.10coord: 181..270
e-value: 3.1E-18
score: 67.9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..274
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13
IPR028857Cyclin-F, metazoanPANTHERPTHR10177:SF252CYCLIN-Fcoord: 180..269
IPR039361CyclinPANTHERPTHR10177CYCLINEcoord: 180..269
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 151..270

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17527contigEcto-sp13_S_contig17527:1..3667 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17527.5273.1mRNA_Ecto-sp13_S_contig17527.5273.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17527 1..3667 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17527.5273.1 ID=prot_Ecto-sp13_S_contig17527.5273.1|Name=mRNA_Ecto-sp13_S_contig17527.5273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=274bp
RFALASTAARAIVSSHAAVMICEGYSEIRLGAREPSLSSSSRRLLSFGGP
TTAGARGGDDAGHGVSSTRAAGGAVAASVAGLPSDTHNDNNNSNRDLLGQ
GSGSRTVRPWSVDEGSPRGGPVAGGGPAKAARYRRSDKHLALRALHHLEC
CGDLLIRQLKTLPRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVAC
QFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQV
MNTSEAIHICDSQYNPAQVHSTFN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006671Cyclin_N
IPR028857CCNF_metazoan
IPR039361Cyclin
IPR036915Cyclin-like_sf