mRNA_Ecto-sp13_S_contig17525.5271.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17525.5271.1 vs. uniprot
Match: D8LN36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN36_ECTSI) HSP 1 Score: 480 bits (1236), Expect = 6.210e-171 Identity = 239/251 (95.22%), Postives = 246/251 (98.01%), Query Frame = 1
Query: 1 QVVIPAICFAVCAGFQTWEFLGSHDDPARARTLFKAVRAGWVKDQFMKGTAACNTTRDYIKSAVFMANTAITLATFAVGYAGSIYTNCSDDND-CTPEDWLFVIKLGCLSAVLLVNFFVLTQCTRFAVHFSFCINTREIEGVPMSHAMLVNVFEHSHKYFSLGIRLYFGTIPVFAWIFTPWALLAVTPVYVYMVRGLENAGFVKDEMDQVTGRRRATLPPLASESTADARTLSATATAAGGLEEGPSNKIL 750
+VVIPAICFAVCAGFQTWEFLGSHDDPARARTLFKAVRAGWVKDQFMKGTAACNTTRDYIKSAVFMANTAITLATFAVGYAGSIYT+CSDD+D CTPEDWLFVIKLGCLSAVLLVNFFVLTQCTRFAVHFSFCINTREIEGVPMSHAMLVNVFEHSHKYFSLGIRLYFGTIPVFAWIFTPWALLAVTPVYVYMVRGLENAGFVKDEMDQ+TGR+RATLPP SESTADAR +SATATAAGGLEEGPS+K L
Sbjct: 12 EVVIPAICFAVCAGFQTWEFLGSHDDPARARTLFKAVRAGWVKDQFMKGTAACNTTRDYIKSAVFMANTAITLATFAVGYAGSIYTDCSDDDDDCTPEDWLFVIKLGCLSAVLLVNFFVLTQCTRFAVHFSFCINTREIEGVPMSHAMLVNVFEHSHKYFSLGIRLYFGTIPVFAWIFTPWALLAVTPVYVYMVRGLENAGFVKDEMDQMTGRKRATLPPPGSESTADARAVSATATAAGGLEEGPSDKNL 262
BLAST of mRNA_Ecto-sp13_S_contig17525.5271.1 vs. uniprot
Match: D8LN41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN41_ECTSI) HSP 1 Score: 320 bits (821), Expect = 3.650e-108 Identity = 154/214 (71.96%), Postives = 179/214 (83.64%), Query Frame = 1
Query: 1 QVVIPAICFAVCAGFQTWEFLGSHD-DPARARTLFKAVRAGWVKDQFMKGTAACNTTRDYIKSAVFMANTAITLATFAVGYAGSIYTNCSD-DNDCTPEDWLFVIKLGCLSAVLLVNFFVLTQCTRFAVHFSFCINTREIEGVPMSHAMLVNVFEHSHKYFSLGIRLYFGTIPVFAWIFTPWALLAVTPVYVYMVRGLENAGFVKDEMDQVTGR 636
QVVIPA+CFAVCA FQ WE G H + ARAR LF+ VRAGWV D +MKG AA NTTRDYI++A+F ANTAI LATF VGYAGSIYT+CSD D C+ +DWLFVIKLG L+A+L+ FFV TQCTR+AVHFSFCINTR+I G PM +++V VF H+H+Y+SLGIRLYFGTIPVFAWIFT WALLAVTPVY YMVRGLENAGFV+DE+D++ R
Sbjct: 13 QVVIPAVCFAVCAAFQGWELWGPHKPELARARALFRDVRAGWVVDNYMKGQAAVNTTRDYIRAALFFANTAILLATFVVGYAGSIYTDCSDGDTSCSADDWLFVIKLGVLAALLMTIFFVFTQCTRYAVHFSFCINTRKIAGAPMPQSLMVKVFNHAHQYYSLGIRLYFGTIPVFAWIFTSWALLAVTPVYAYMVRGLENAGFVQDELDEIARR 226
BLAST of mRNA_Ecto-sp13_S_contig17525.5271.1 vs. uniprot
Match: A0A6H5JMS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMS3_9PHAE) HSP 1 Score: 316 bits (810), Expect = 1.550e-106 Identity = 154/226 (68.14%), Postives = 184/226 (81.42%), Query Frame = 1
Query: 1 QVVIPAICFAVCAGFQTWEFLGSHD-DPARARTLFKAVRAGWVKDQFMKGTAACNTTRDYIKSAVFMANTAITLATFAVGYAGSIYTNCSD-DNDCTPEDWLFVIKLGCLSAVLLVNFFVLTQCTRFAVHFSFCINTREIEGVPMSHAMLVNVFEHSHKYFSLGIRLYFGTIPVFAWIFTPWALLAVTPVYVYMVRGLENAGFVKDEMDQVTGRRRATLPPLASES 672
+VVIPA+CF VCA FQ WEF G H + A+AR LF+ VRAGWV D +MKG AA NTTRDYI++A+F ANTAI L TF VGYAGSIYT+CSD D C+ +DWLFVIKLG L+A+L+ FFV TQCTR+AVHFSFCINT++I G PM +++V VF H+H+Y+SLGIRL+FGTIPVFAWIFT WALLAVTPVY YMVRGLENAGFV+DE+D++ R +A LP S S
Sbjct: 5 RVVIPAVCFTVCAAFQGWEFCGPHKPERAKARALFRDVRAGWVVDNYMKGQAAVNTTRDYIRAALFFANTAILLTTFVVGYAGSIYTDCSDGDKSCSADDWLFVIKLGVLAALLMTIFFVFTQCTRYAVHFSFCINTKKIAGAPMPQSLMVKVFNHAHQYYSLGIRLFFGTIPVFAWIFTSWALLAVTPVYAYMVRGLENAGFVQDELDEIA-RVKAALPQPPSSS 229
BLAST of mRNA_Ecto-sp13_S_contig17525.5271.1 vs. uniprot
Match: A0A835Z3S4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3S4_9STRA) HSP 1 Score: 221 bits (564), Expect = 6.640e-69 Identity = 101/206 (49.03%), Postives = 144/206 (69.90%), Query Frame = 1
Query: 4 VVIPAICFAVCAGFQTWEFLGSHDDPARARTLFKAVRAGWVKDQFMKGTAACNTTRDYIKSAVFMANTAITLATFAVGYAGSIYTNCSD-DNDCTPEDWLFVIKLGCLSAVLLVNFFVLTQCTRFAVHFSFCINTREIEGVPMSHAMLVNVFEHSHKYFSLGIRLYFGTIPVFAWIFTPWALLAVTPVYVYMVRGLENAGFVKDEM 618
+++P +CF A F +EF G + P R LFK VR GWV++ ++KG A NTTRDY++ ++F NTAI +A FA G+A + Y CSD + CT D +IK+GC+ A++L FF+ TQC+RF +HFSF INTR++ GVP+ + VF H+H Y+ +GIR+YF TIPVFAW+FT W LLAVTP+Y+Y++ GLE++ F+ E+
Sbjct: 9 IIVPIVCFVFIAFFHAFEFRG--EGPTRG--LFKRVRKGWVEENYLKGQQAVNTTRDYVRVSLFFGNTAILIANFAAGFAATRYATCSDAEGGCTSNDIQLMIKIGCIVALMLSIFFLFTQCSRFIIHFSFMINTRDVNGVPLPKELTNRVFNHAHDYYGIGIRMYFMTIPVFAWVFTEWCLLAVTPIYLYIIHGLESSSFMTKEL 210
BLAST of mRNA_Ecto-sp13_S_contig17525.5271.1 vs. uniprot
Match: A0A835ZEB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEB1_9STRA) HSP 1 Score: 183 bits (465), Expect = 2.820e-54 Identity = 88/219 (40.18%), Postives = 137/219 (62.56%), Query Frame = 1
Query: 1 QVVIPAICFAVCAGFQTWEFLGSHDDPARARTLFKAVRAGWVKDQFMKGTAACNTTRDYIKSAVFMANTAITLATFAVGYAGSIYTNCSDDND-CTPEDWLFVIKLGCLSAVLLVNFFVLTQCTRFAVHFSFCINTREIEGVPMSHAMLVNVFEHSHKYFSLGIRLYFGTIPVFAWIFTPWALLAVTPVYVYMVRGLENAGFVKDEMDQVTGRRRATLP 654
Q+ IP +CFA + +EF+ + R LF VR GWV + + G A NTTRDYI+ A + ++I +A F G A + +C++ CT + L ++KLG L ++ FF+ TQC RFA+HFSF INTRE+ VP+ +++ VF+H+H Y+S+GIR +F TIPV +W+FT W LL VTPVY+ +V G+E++ F+ + + ++ +++ P
Sbjct: 5 QIAIPIVCFAFIVAYHGYEFVRVGE----TRKLFAQVRKGWVDNCVLTGQQAVNTTRDYIRVASALGGSSIIIAIFVAGVASGHFADCANSGTGCTQAEVLVLVKLGTLVGLMCTIFFLFTQCARFAIHFSFMINTREMNSVPLPPSLMTRVFDHAHWYYSVGIRAFFVTIPVVSWLFTSWCLLGVTPVYLLVVHGIESSAFMSEPLLELKAKQQEQQP 219
BLAST of mRNA_Ecto-sp13_S_contig17525.5271.1 vs. uniprot
Match: A0A6H5K746_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K746_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 1.460e-13 Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1
Query: 139 MKGTAACNTTRDYIKSAVFMANTAITLATFAVGYAGSI 252
MKGTAACNTTRDYIKSAVFMANTAITLATFAVGYAG +
Sbjct: 1 MKGTAACNTTRDYIKSAVFMANTAITLATFAVGYAGEV 38
BLAST of mRNA_Ecto-sp13_S_contig17525.5271.1 vs. uniprot
Match: A0A7S3Y5F8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5F8_HETAK) HSP 1 Score: 67.0 bits (162), Expect = 5.940e-11 Identity = 28/57 (49.12%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 442 LVNVFEHSHKYFSLGIRLYFGTIPVFAWIFTPWALLAVTPVYVYMVRGLENAGFVKD 612
+V VFE +H Y+S+GIRLYF +P+FAW+F+ WALL T +++ ++ LE A F++D
Sbjct: 1 MVKVFERAHMYYSIGIRLYFLAVPLFAWLFSRWALLGATVIHLTIIYELERAQFLQD 57
BLAST of mRNA_Ecto-sp13_S_contig17525.5271.1 vs. uniprot
Match: A0A4D9D158_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D158_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 3.610e-8 Identity = 53/187 (28.34%), Postives = 83/187 (44.39%), Query Frame = 1
Query: 1 QVVIPAICFAV-----CAGFQTWEFLGSHDDP-ARA--------RTLFKAVRAGWVKDQFMKGTAACNTTRDYIKSAVFMANTAITLATFAVGYAGSIYTNCSDDN--DCTPEDW---------LFVIKLGCLSAVLLVNFFVLTQCTRFAVHFSFCINTREIEGVPMSHAMLVNVFEHSHKYFSLG 486
Q+ +P I F F+ W + DP AR RTLF +R WV + + T RD I++ + A A+ + +G + S N N C PED L VI+ G +V FF + RFA++ SF INT++++G P+S + V+V + +++LG
Sbjct: 9 QIFVPVISFLTIFLVHARYFKLWLTPTAWADPHARVDLQSVHNLRTLFVGIRTRWVLENHGRKNMVVQTLRDMIRTCMSSATAAMAFISIFIGLSKS---NLLTLNLLGCRPEDGPECNSFEAHLRVIRFGLCIGNFVVIFFNMLLAARFALNTSFMINTKQVDGKPLSQMLTVHVLARASWHYALG 192
BLAST of mRNA_Ecto-sp13_S_contig17525.5271.1 vs. uniprot
Match: D7SJ44_VITVI (Uncharacterized protein n=5 Tax=Vitis TaxID=3603 RepID=D7SJ44_VITVI) HSP 1 Score: 58.9 bits (141), Expect = 9.340e-7 Identity = 52/210 (24.76%), Postives = 88/210 (41.90%), Query Frame = 1
Query: 4 VVIPAICFAVCAGFQTWEFLGSHDDPARARTLFKAV-RAGWV----KDQFMKGTAACNTTRDYIKSAVFMANTAITLATFAVGYAGSIYTNCSDDNDCTPEDWLFVIKLGCLSAV--------LLVNFFVLTQCTRFAVHFSFCINTREIEGVPMSHAMLVNVFEHSHKYFSLGIRLYFGTIPVFAWIFTPWALLAVTPVYVYMVRGLEN 594
VV+P + AV + W F+ P+R A R WV D G A T R+ I +A +A TAITL++ S++ + + + T ++ K +S++ LV F Q R+ H SF + G S + + ++SLG+R ++ + P+F WIF P + + +M+ L+
Sbjct: 9 VVVP-LGLAVMGAYHVWLFITILRSPSRTVIGINAQSRRQWVFSLMADPLKNGVLAVQTIRNNIMAATLLATTAITLSSLI-----SVFVSSTSKSSSTASVLVYGNKTSLVSSIKYFSILLCFLVAFLCNVQSIRYYAHVSFLVTLPTSMGKRDSIEYVARNLDRGSIFWSLGLRAFYLSFPLFLWIFGPIPMFVCCCIMSFMLYFLDT 212
BLAST of mRNA_Ecto-sp13_S_contig17525.5271.1 vs. uniprot
Match: A0A164UVD7_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A164UVD7_DAUCS) HSP 1 Score: 57.8 bits (138), Expect = 2.360e-6 Identity = 48/191 (25.13%), Postives = 77/191 (40.31%), Query Frame = 1
Query: 4 VVIPAICFAVCAGFQTWEFLGSHDDPARARTLFKAV-RAGWV----KDQFMKGTAACNTTRDYIKSAVFMANTAITLATFAVGYAGSIYTNCSDDNDCTPEDWLFVIKLGCLSAV--------LLVNFFVLTQCTRFAVHFSFCINTREIEGVPMSHAMLVNVFEHSHKYFSLGIRLYFGTIPVFAWIFTP 537
+++P+ +C + W P R A R WV D G A T R+ I ++ +A AITL++ S+Y + S D + +F K +S+V LV F QC R+ H SF + + S + ++SLG+R ++ + P+F WIF P
Sbjct: 9 ILVPSGVVVLCV-YHVWLLFTIKRRPTRTVIGINAQSRHQWVFCMMADPVKNGVLAVQTIRNNIMASTLLATAAITLSSLI-----SVYVSSSSDTASRSSELIFGNKTRIMSSVKYFTILLCFLVAFLCNVQCIRYYAHVSFLVTLPSSKDSTESIEYVARNLNRGSLFWSLGLRAFYFSFPLFLWIFGP 193 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17525.5271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17525.5271.1 >prot_Ecto-sp13_S_contig17525.5271.1 ID=prot_Ecto-sp13_S_contig17525.5271.1|Name=mRNA_Ecto-sp13_S_contig17525.5271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=251bp QVVIPAICFAVCAGFQTWEFLGSHDDPARARTLFKAVRAGWVKDQFMKGTback to top mRNA from alignment at Ecto-sp13_S_contig17525:730..3512+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17525.5271.1 ID=mRNA_Ecto-sp13_S_contig17525.5271.1|Name=mRNA_Ecto-sp13_S_contig17525.5271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17525:730..3512+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17525:730..3512+ >mRNA_Ecto-sp13_S_contig17525.5271.1 ID=mRNA_Ecto-sp13_S_contig17525.5271.1|Name=mRNA_Ecto-sp13_S_contig17525.5271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17525:730..3512+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |