mRNA_Ecto-sp13_S_contig17518.5268.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig17518.5268.1
Unique Name	mRNA_Ecto-sp13_S_contig17518.5268.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig17518.5268.1 vs. uniprot
Match: D7FV82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV82_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 5.360e-20
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1

Query:    1 RFPRRDLVNLHEDLAELVGERGLVSVGQQLQIVQRVQRSYAFLLPR 138
            RFPRRDLVNLHEDLAELVGERGLVSVGQQLQIVQRVQRSY FLLPR
Sbjct:  721 RFPRRDLVNLHEDLAELVGERGLVSVGQQLQIVQRVQRSYKFLLPR 766

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BLAST of mRNA_Ecto-sp13_S_contig17518.5268.1 vs. uniprot
Match: A0A7R9VRK5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VRK5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 8.600e-9
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1

Query:    1 RFPRRDLVNLHEDLAELVGERGLVSVGQQLQIVQRVQRSYAFL 129
            RF R +L N+ EDLAEL GERG VSV QQLQIV R+ R+Y FL
Sbjct:  104 RFRRNELRNVSEDLAELAGERGAVSVQQQLQIVARMSRTYPFL 146

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BLAST of mRNA_Ecto-sp13_S_contig17518.5268.1 vs. uniprot
Match: A0A7S3QA01_9STRA (Hypothetical protein n=3 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QA01_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.170e-7
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1

Query:    1 RFPRRDLVNLHEDLAELVGERGLVSVGQQLQIVQRVQRSYAFL 129
            RF R +L N  EDLAEL GERG VSV QQLQI+ R+ R+Y+FL
Sbjct:  887 RFTRSELRNASEDLAELAGERGAVSVRQQLQIIARMCRTYSFL 929

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BLAST of mRNA_Ecto-sp13_S_contig17518.5268.1 vs. uniprot
Match: A0A7R9ZKU9_9STRA (Hypothetical protein n=4 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZKU9_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.070e-7
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1

Query:    1 RFPRRDLVNLHEDLAELVGERGLVSVGQQLQIVQRVQRSYAFLLPRH 141
            RF   D+ ++ EDLAEL GERG V V QQ+QI+ R+ R+YAFL  R+
Sbjct:  409 RFSSNDIRSVAEDLAELAGERGAVCVSQQIQIIARMSRTYAFLRVRN 455

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BLAST of mRNA_Ecto-sp13_S_contig17518.5268.1 vs. uniprot
Match: A0A7S4MTH1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MTH1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.040e-6
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 1

Query:    1 RFPRRDLVNLHEDLAELVGERGLVSVGQQLQIVQRVQRSYAFL 129
            RF R  L ++ EDLAEL GERG VSV QQLQIV R+ R+Y FL
Sbjct:  404 RFARSGLRSVSEDLAELAGERGAVSVQQQLQIVARMCRTYPFL 446

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BLAST of mRNA_Ecto-sp13_S_contig17518.5268.1 vs. uniprot
Match: A0A7S3L1P6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L1P6_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.950e-6
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1

Query:    1 RFPRRDLVNLHEDLAELVGERGLVSVGQQLQIVQRVQRSYAFL 129
            RF R  L  + EDLAEL GERG VSV QQLQI+ R+ R+Y+FL
Sbjct:  418 RFTRDVLRGVSEDLAELAGERGAVSVRQQLQILTRMNRNYSFL 460

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BLAST of mRNA_Ecto-sp13_S_contig17518.5268.1 vs. uniprot
Match: A0A7S2R429_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R429_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.330e-6
Identity = 24/44 (54.55%), Postives = 35/44 (79.55%), Query Frame = 1

Query:    1 RFPRRDLVNLHEDLAELVGERGLVSVGQQLQIVQRVQRSYAFLL 132
            RF +++L ++ EDLAEL GE+G VSV QQL+I+ R+ R+Y FL+
Sbjct:  161 RFSKKELSSISEDLAELTGEKGPVSVQQQLRIIGRMCRTYPFLM 204

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BLAST of mRNA_Ecto-sp13_S_contig17518.5268.1 vs. uniprot
Match: A0A7S1Z033_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z033_TRICV)

HSP 1 Score: 51.6 bits (122), Expect = 2.640e-6
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1

Query:    1 RFPRRDLVNLHEDLAELVGERGLVSVGQQLQIVQRVQRSYAFL 129
            RF    + N+ EDLAELVGERG VSV QQLQIV R+ R+Y+FL
Sbjct:  286 RFSPAVVRNVSEDLAELVGERGSVSVQQQLQIVGRMCRTYSFL 328

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BLAST of mRNA_Ecto-sp13_S_contig17518.5268.1 vs. uniprot
Match: A0A7S2LEI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LEI8_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.840e-6
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1

Query:    1 RFPRRDLVNLHEDLAELVGERGLVSVGQQLQIVQRVQRSYAFL 129
            RF  +++ N+ EDLAEL GERG VSV QQL+IV R+ R Y+F+
Sbjct:  250 RFSDQEIRNVLEDLAELSGERGCVSVKQQLEIVSRMSRVYSFM 292

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BLAST of mRNA_Ecto-sp13_S_contig17518.5268.1 vs. uniprot
Match: A0A6U3SXL5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SXL5_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.000e-6
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1

Query:    1 RFPRRDLVNLHEDLAELVGERGLVSVGQQLQIVQRVQRSYAFL 129
            RF +  + N+ EDLAEL GERG V+V QQLQI+ R+ R+Y FL
Sbjct:  563 RFSQSTIRNVSEDLAELAGERGAVTVRQQLQILSRMGRTYPFL 605

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig17518.5268.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig17518.5268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18


Match Name	E-value	Identity	Description
D7FV82_ECTSI	5.360e-20	97.83	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7R9VRK5_9STRA	8.600e-9	67.44	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]
A0A7S3QA01_9STRA	1.170e-7	65.12	Hypothetical protein n=3 Tax=Chaetoceros debilis T...	[more]
A0A7R9ZKU9_9STRA	4.070e-7	55.32	Hypothetical protein n=4 Tax=Craspedostauros austr...	[more]
A0A7S4MTH1_9STRA	1.040e-6	65.12	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A7S3L1P6_9STRA	1.950e-6	62.79	Hypothetical protein n=1 Tax=Amphora coffeiformis ...	[more]
A0A7S2R429_9STRA	2.330e-6	54.55	Hypothetical protein n=1 Tax=Eucampia antarctica T...	[more]
A0A7S1Z033_TRICV	2.640e-6	65.12	Hypothetical protein n=1 Tax=Trieres chinensis Tax...	[more]
A0A7S2LEI8_9STRA	4.840e-6	58.14	Hypothetical protein n=1 Tax=Leptocylindrus danicu...	[more]
A0A6U3SXL5_9STRA	5.000e-6	58.14	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig17518	contig	Ecto-sp13_S_contig17518:337..480 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	0
Seed ortholog score	92.8
Seed ortholog evalue	4.6e-17
Seed eggNOG ortholog	2880.D7FV82
Model size	144
KEGG ko	ko:K18158
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0016020,GO:0019867,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
Exons	1
EggNOG free text desc.	Nuclear control of ATPase protein
EggNOG OGs	28M9W@1,2QQIS@2759
Cds size	144
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03029

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462911.9725804-CDS-Ecto-sp13_S_contig17518:336..480	1681462911.9725804-CDS-Ecto-sp13_S_contig17518:336..480	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig17518 337..480 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig17518.5268.1	prot_Ecto-sp13_S_contig17518.5268.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig17518 337..480 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig17518:337..480+
coding sequence from alignment at Ecto-sp13_S_contig17518:337..480+

protein sequence of mRNA_Ecto-sp13_S_contig17518.5268.1

>prot_Ecto-sp13_S_contig17518.5268.1 ID=prot_Ecto-sp13_S_contig17518.5268.1|Name=mRNA_Ecto-sp13_S_contig17518.5268.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
RFPRRDLVNLHEDLAELVGERGLVSVGQQLQIVQRVQRSYAFLLPRH*

mRNA from alignment at Ecto-sp13_S_contig17518:337..480+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig17518.5268.1 ID=mRNA_Ecto-sp13_S_contig17518.5268.1|Name=mRNA_Ecto-sp13_S_contig17518.5268.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17518:337..480+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGATTCCCACGAAGAGATCTCGTAAACTTGCACGAGGACTTGGCTGAGCT
GGTCGGGGAGAGGGGTTTGGTGTCCGTGGGCCAGCAGCTCCAGATCGTGC
AGCGGGTGCAGCGCTCCTACGCGTTTCTCCTGCCGCGCCATTGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17518:337..480+

>mRNA_Ecto-sp13_S_contig17518.5268.1 ID=mRNA_Ecto-sp13_S_contig17518.5268.1|Name=mRNA_Ecto-sp13_S_contig17518.5268.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17518:337..480+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGATTCCCACGAAGAGATCTCGTAAACTTGCACGAGGACTTGGCTGAGCT
GGTCGGGGAGAGGGGTTTGGTGTCCGTGGGCCAGCAGCTCCAGATCGTGC
AGCGGGTGCAGCGCTCCTACGCGTTTCTCCTGCCGCGCCATTGA