mRNA_Ecto-sp13_S_contig17513.5267.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17513.5267.1
Unique NamemRNA_Ecto-sp13_S_contig17513.5267.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17513.5267.1 vs. uniprot
Match: D7FU41_ECTSI (Pre-mRNA-splicing factor SLU7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU41_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 4.100e-41
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 1 
Query:    1 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPETAAEDLVFAGDNFIRYVG 222
            QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPETAAEDLVFAGDNFIRY G
Sbjct:  299 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPETAAEDLVFAGDNFIRYTG 372
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BLAST of mRNA_Ecto-sp13_S_contig17513.5267.1 vs. uniprot
Match: A0A836CLD5_9STRA (Pre-mRNA-splicing factor SLU7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLD5_9STRA)

HSP 1 Score: 127 bits (320), Expect = 8.860e-33
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:    1 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPETAAEDLVFAGDNFIRYVG 222
            QGRVARQGGLGGAQM TTVRNLRIREDRAKYLYNLDP+SAYYDPKTRAMR+NP P    E+L +AGDNF+RY G
Sbjct:  262 QGRVARQGGLGGAQMATTVRNLRIREDRAKYLYNLDPDSAYYDPKTRAMRENPNPSANPEELAYAGDNFMRYGG 335
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BLAST of mRNA_Ecto-sp13_S_contig17513.5267.1 vs. uniprot
Match: A0A6G0RVC6_9STRA (Pre-mRNA-splicing factor SLU7 n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RVC6_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.630e-32
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    7 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPETAAEDLVFAGDNFIRYVG 222
            RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSAYYDPKTR+MRDNP PE   ED  + GDN  R+ G
Sbjct:    5 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTYVGDNIARFTG 76
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BLAST of mRNA_Ecto-sp13_S_contig17513.5267.1 vs. uniprot
Match: A0A7S2MS38_9STRA (Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MS38_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.280e-31
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPETAAEDLVFAGDNFIRYVG 222
            Q R+ARQGG+GGAQMKTTVRNLRIRED AKYL NLDPNSAYYDPKTR+MRDNP+P    E++ +AGDNF RY G
Sbjct:  164 QKRIARQGGIGGAQMKTTVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPLPNENPEEVQYAGDNFSRYSG 237
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BLAST of mRNA_Ecto-sp13_S_contig17513.5267.1 vs. uniprot
Match: A0A6A3U154_9STRA (Pre-mRNA-splicing factor SLU7 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U154_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.140e-31
Identity = 54/72 (75.00%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    7 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPETAAEDLVFAGDNFIRYVG 222
            RVARQGG+GGAQMKTTVRNLRIR+D AKYL NL+PNSAYYDPKTR+MRDNP PE   ED  + GDN  R+ G
Sbjct:    5 RVARQGGVGGAQMKTTVRNLRIRDDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTYVGDNIARFTG 76
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BLAST of mRNA_Ecto-sp13_S_contig17513.5267.1 vs. uniprot
Match: W7TVH6_9STRA (Pre-mRNA-splicing factor SLU7 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVH6_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.530e-31
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:    1 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPETAAEDLVFAGDNFIRYVG 222
            QGRVARQGG+GGAQMK +VRNLRIRED AKYL NLDPNSAYYDPKTRAMRDNP+P T  E+L +AGDN++R  G
Sbjct:  242 QGRVARQGGVGGAQMKVSVRNLRIREDTAKYLRNLDPNSAYYDPKTRAMRDNPLPGTHPEELAYAGDNYVRTTG 315
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BLAST of mRNA_Ecto-sp13_S_contig17513.5267.1 vs. uniprot
Match: A0A7R9U7Z6_9STRA (Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7Z6_9STRA)

HSP 1 Score: 121 bits (303), Expect = 9.180e-31
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPETAAEDLVFAGDNFIRYVG 222
            QGRVARQGGLGGAQM TTVRNLR+RED+AKYL NLDPNSAYYDPK+R+MR+NP+P       V+AGDNFIRY G
Sbjct:  260 QGRVARQGGLGGAQMATTVRNLRLREDKAKYLLNLDPNSAYYDPKSRSMRENPLPHLDPAQAVYAGDNFIRYQG 333
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BLAST of mRNA_Ecto-sp13_S_contig17513.5267.1 vs. uniprot
Match: A0A7S2V1R9_9STRA (Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1R9_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.300e-30
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPETAAEDLVFAGDNFIRYVG 222
            QGRVARQGGLGGAQMKTTVRNLRIRED AKYL NLDPNSA+YDPKTR+MR NP P   AE+ ++AGDN++R  G
Sbjct:  255 QGRVARQGGLGGAQMKTTVRNLRIREDTAKYLRNLDPNSAFYDPKTRSMRANPTPHLDAENTLYAGDNWVRSTG 328
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BLAST of mRNA_Ecto-sp13_S_contig17513.5267.1 vs. uniprot
Match: A0A7S1UIW3_9STRA (Pre-mRNA-splicing factor SLU7 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIW3_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.390e-30
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPETAAEDLVFAGDNFIRYVG 222
            QGRVARQGG+GGAQM TTVRNLR+RED AKYL NLDPNSAYYDPK+RAMRDNP+P      LV+AGDNF+R  G
Sbjct:   72 QGRVARQGGVGGAQMFTTVRNLRVREDTAKYLLNLDPNSAYYDPKSRAMRDNPLPHMDPNKLVYAGDNFVRSSG 145
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BLAST of mRNA_Ecto-sp13_S_contig17513.5267.1 vs. uniprot
Match: A0A7S2SN22_9STRA (Pre-mRNA-splicing factor SLU7 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN22_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.070e-29
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPETAAEDLVFAGDNFIRYVG 222
            Q R+ARQGG+GGAQMKTTVRNLRIRED AKYL NLDPNSAYYDPKTR+MRDNP+P    ED+ FAGDN+ R  G
Sbjct:  312 QKRIARQGGVGGAQMKTTVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPLPAENPEDIPFAGDNYQRISG 385
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17513.5267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU41_ECTSI4.100e-4198.65Pre-mRNA-splicing factor SLU7 n=2 Tax=Ectocarpus T... [more]
A0A836CLD5_9STRA8.860e-3382.43Pre-mRNA-splicing factor SLU7 n=1 Tax=Tribonema mi... [more]
A0A6G0RVC6_9STRA2.630e-3276.39Pre-mRNA-splicing factor SLU7 n=2 Tax=Phytophthora... [more]
A0A7S2MS38_9STRA1.280e-3177.03Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=D... [more]
A0A6A3U154_9STRA3.140e-3175.00Pre-mRNA-splicing factor SLU7 n=3 Tax=Phytophthora... [more]
W7TVH6_9STRA3.530e-3178.38Pre-mRNA-splicing factor SLU7 n=2 Tax=Monodopsidac... [more]
A0A7R9U7Z6_9STRA9.180e-3177.03Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=P... [more]
A0A7S2V1R9_9STRA1.300e-3077.03Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=F... [more]
A0A7S1UIW3_9STRA2.390e-3077.03Pre-mRNA-splicing factor SLU7 n=1 Tax=Phaeomonas p... [more]
A0A7S2SN22_9STRA2.070e-2977.03Pre-mRNA-splicing factor SLU7 n=2 Tax=Rhizochromul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17513contigEcto-sp13_S_contig17513:2915..3136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score151.4
Seed ortholog evalue1.7e-34
Seed eggNOG ortholog2880.D7FU41
Preferred nameSLU7
Model size222
KEGG koko:K12819,ko:K17081,ko:K20040
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008284,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065003,GO:0065007,GO:0071020,GO:0071021,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons1
EggNOG free text desc.RNA splicing
EggNOG OGsKOG2560@1,KOG2560@2759
Cds size222
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03041,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462911.9394226-CDS-Ecto-sp13_S_contig17513:2914..31361681462911.9394226-CDS-Ecto-sp13_S_contig17513:2914..3136Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17513 2915..3136 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17513.5267.1prot_Ecto-sp13_S_contig17513.5267.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17513 2915..3136 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17513.5267.1

>prot_Ecto-sp13_S_contig17513.5267.1 ID=prot_Ecto-sp13_S_contig17513.5267.1|Name=mRNA_Ecto-sp13_S_contig17513.5267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMR
DNPMPETAAEDLVFAGDNFIRYVG
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mRNA from alignment at Ecto-sp13_S_contig17513:2915..3136-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17513.5267.1 ID=mRNA_Ecto-sp13_S_contig17513.5267.1|Name=mRNA_Ecto-sp13_S_contig17513.5267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17513:2915..3136- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGTCGAGTAGCCCGGCAGGGTGGTCTAGGTGGTGCCCAGATGAAGAC
CACGGTGCGAAACCTGCGTATCCGAGAAGACAGGGCCAAGTACCTCTACA
ACCTCGACCCCAACTCGGCCTACTACGACCCCAAGACGCGTGCGATGCGC
GACAACCCCATGCCCGAGACAGCGGCGGAGGACCTCGTCTTCGCTGGAGA
CAACTTCATCCGGTACGTCGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17513:2915..3136-

>mRNA_Ecto-sp13_S_contig17513.5267.1 ID=mRNA_Ecto-sp13_S_contig17513.5267.1|Name=mRNA_Ecto-sp13_S_contig17513.5267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17513:2915..3136- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGTCGAGTAGCCCGGCAGGGTGGTCTAGGTGGTGCCCAGATGAAGAC
CACGGTGCGAAACCTGCGTATCCGAGAAGACAGGGCCAAGTACCTCTACA
ACCTCGACCCCAACTCGGCCTACTACGACCCCAAGACGCGTGCGATGCGC
GACAACCCCATGCCCGAGACAGCGGCGGAGGACCTCGTCTTCGCTGGAGA
CAACTTCATCCGGTACGTCGGT
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