mRNA_Ecto-sp13_S_contig10566.526.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10566.526.1
Unique NamemRNA_Ecto-sp13_S_contig10566.526.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10566.526.1 vs. uniprot
Match: D7FQ58_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ58_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 9.610e-33
Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 ISLVGNARTPEIFLSQGAFDFGRLTAGGCEPLEVTLVNRGSIPASLQLDLSQHEEFHLERKKEASPN 201
            I LVGNARTPEIFLSQGAFDFG LTAGGCEPLEVTLVNRGSIPASLQLDLSQHEEFHLERKKE  PN
Sbjct: 1096 IPLVGNARTPEIFLSQGAFDFGSLTAGGCEPLEVTLVNRGSIPASLQLDLSQHEEFHLERKKEVLPN 1162
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10566.526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ58_ECTSI9.610e-3394.03Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10566contigEcto-sp13_S_contig10566:1878..2078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score129.4
Seed ortholog evalue6.2e-28
Seed eggNOG ortholog2880.D7FQ58
Preferred nameCHDC2
Model size201
KEGG rclassRC00299
KEGG koko:K01593
KEGG ReactionR00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathwayko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG ModuleM00037,M00042
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2CBV6@1,2QQ4Q@2759
EC4.1.1.105,4.1.1.28
Cds size201
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462538.6672852-CDS-Ecto-sp13_S_contig10566:1877..20781681462538.6672852-CDS-Ecto-sp13_S_contig10566:1877..2078Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10566 1878..2078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10566.526.1prot_Ecto-sp13_S_contig10566.526.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10566 1878..2078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10566.526.1

>prot_Ecto-sp13_S_contig10566.526.1 ID=prot_Ecto-sp13_S_contig10566.526.1|Name=mRNA_Ecto-sp13_S_contig10566.526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
ISLVGNARTPEIFLSQGAFDFGRLTAGGCEPLEVTLVNRGSIPASLQLDL
SQHEEFHLERKKEASPN
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mRNA from alignment at Ecto-sp13_S_contig10566:1878..2078+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10566.526.1 ID=mRNA_Ecto-sp13_S_contig10566.526.1|Name=mRNA_Ecto-sp13_S_contig10566.526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10566:1878..2078+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATATCTCTTGTGGGAAACGCCAGGACTCCAGAAATTTTCCTGTCCCAAGG
CGCTTTCGATTTCGGGAGATTAACGGCGGGGGGTTGCGAGCCGCTCGAGG
TCACTCTGGTCAATCGAGGGTCCATTCCGGCCTCCCTGCAGCTAGACCTG
TCGCAGCATGAGGAATTCCACTTGGAGAGGAAGAAAGAAGCGTCGCCCAA
T
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10566:1878..2078+

>mRNA_Ecto-sp13_S_contig10566.526.1 ID=mRNA_Ecto-sp13_S_contig10566.526.1|Name=mRNA_Ecto-sp13_S_contig10566.526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10566:1878..2078+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATATCTCTTGTGGGAAACGCCAGGACTCCAGAAATTTTCCTGTCCCAAGG
CGCTTTCGATTTCGGGAGATTAACGGCGGGGGGTTGCGAGCCGCTCGAGG
TCACTCTGGTCAATCGAGGGTCCATTCCGGCCTCCCTGCAGCTAGACCTG
TCGCAGCATGAGGAATTCCACTTGGAGAGGAAGAAAGAAGCGTCGCCCAA
T
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